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The map label for this gene is ydcM [C]

Identifier: 158316871

GI number: 158316871

Start: 6124272

End: 6125657

Strand: Reverse

Name: ydcM [C]

Synonym: Franean1_5114

Alternate gene names: 158316871

Gene position: 6125657-6124272 (Counterclockwise)

Preceding gene: 158316872

Following gene: 158316870

Centisome position: 68.2

GC content: 70.56

Gene sequence:

>1386_bases
GTGAAGGTTCTCCAGGCGTACCGGTTCGCACTCGACCCGAACCAGGCGCAGCTTGCCGACCTGCGGCGTCATGCCGGGGC
GGCCCGGTTCGTGTTCAACTGGGGTCTGGCCCGGGTGAAAGCCGCCCTGTCGCAGCGAGACGCCGAGCAGTCCTACGGCC
TGACCGGGGACATGCTCACCCCGGTGCCGTGGACGCTGCCCGCGCTGCGCCTCGCCTGGAACGAGGCCAAGAGCACCGTC
GCCCCGTGGTGGTCGGCGTGCTCGAAGGAGGCGTACTCGTCCGGCCTCGACCAGCTCGCCCGCGGGTTGAAGAACTTCAC
TGATTCCCGCACGGGGAAGCGGAAGGGGAAGCGGGTCGGTTTCCCCCGGTTCAAGAAGCGTGGCAGGGCCCGCGACTCGT
TCCGGTACACGACCGGCGCCTACGGCCCGGCCAGCAACCTACAGGTGAAGCTGCCCCGCCTGGGCCGGGTCAAGGTCCAC
GAGGCGATGGGTGCGCTCACCGGCCGGTTGGCGGCCGGGTCCGCCCGGCTGCTCGGTGCGACCGTGTCGCGCACGGCGGG
CCGCTGGTTCGTGGCGTTCACCGTCGAGATCGATCGTGAGATCCCCCAGAACCCGTCGGCCCGCCAACGTGCGGGCGGCG
CGGTCGGTGTCGACGCGGGAGTGAAGCACCTCGCTGTCCTGTCGACCGGTGAGCAGGTCGACAACCCCAGGCCACTCACC
CGCTCGCTGCGCAGGCTGCGCACTGCGTCCCGGGCCTGTGCCCGCTCGAAGCCGGGCAGTGCCGGCCGCCGCCAGCGCGC
TGCCGCACTGGGCCACCTGCACGCCCACATTGCCCACCAGCGGCGCGATGGGCTGCACAAGCTCACCACCCGGCTCACGA
AGAACCACGACGTGATCGTGGTCGAGGATCTGCATGTCGCCGGGATGGTCCGTAACCGCCGGCTCGCCCGCGCGGTCTCG
GACACCGGGATGGCCGAGATCCGGCGCCAACTCACCTACAAGACCGTCTGGTACGGATCGCGGCTCGTCGTCGCGGACCG
GTGGTATCCGTCGAGTAAGACCTGTTCCGGCTGTGGCTGGCGAAACCCAAGCCTCACCCCGGCCGACCGCACGTTCGCCT
GCCAGTCCTGCGGGCTGGTGATCGACCGCGACCTGAACGCCGCGATCAACCTGCGCAACCTCGTCGCCGCCAGTACGTCG
GAGACGGAAAACGCCCGTGGAGCCGACCGTAGGACCCAGCCTGCTGGGCGGGTGGCTGGGAAGCGGGAACCCGGCACCGT
GGGCATGACCCCGTGCGAGCGGGTCAGACCGGGGGTGCCTCACCGAGAGGCGAGGCGGCATGACCGGGCGCTACCAGGCG
CTCACATGCAACGGCGGTGGCACTGA

Upstream 100 bases:

>100_bases
TGACGGAGATCCTGACGTTGATGTGCGCCCGGCTCTATGGCCCCCGGGACGCCTCGGACCGGGCTGCCCGCGCGGTGGCT
GCCGCTACCGGGGACGTGCG

Downstream 100 bases:

>100_bases
TCGTGCGCGGCCGGCTGGAGAGCGCGGAAGGCGTGGTGGACATGATCGTCGAGAGCCTGCTGCTGCTGCTGCTGCTGCCG
CTGCCGCTGCCGCTGGCGGT

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 461

Protein sequence:

>461_residues
MKVLQAYRFALDPNQAQLADLRRHAGAARFVFNWGLARVKAALSQRDAEQSYGLTGDMLTPVPWTLPALRLAWNEAKSTV
APWWSACSKEAYSSGLDQLARGLKNFTDSRTGKRKGKRVGFPRFKKRGRARDSFRYTTGAYGPASNLQVKLPRLGRVKVH
EAMGALTGRLAAGSARLLGATVSRTAGRWFVAFTVEIDREIPQNPSARQRAGGAVGVDAGVKHLAVLSTGEQVDNPRPLT
RSLRRLRTASRACARSKPGSAGRRQRAAALGHLHAHIAHQRRDGLHKLTTRLTKNHDVIVVEDLHVAGMVRNRRLARAVS
DTGMAEIRRQLTYKTVWYGSRLVVADRWYPSSKTCSGCGWRNPSLTPADRTFACQSCGLVIDRDLNAAINLRNLVAASTS
ETENARGADRRTQPAGRVAGKREPGTVGMTPCERVRPGVPHREARRHDRALPGAHMQRRWH

Sequences:

>Translated_461_residues
MKVLQAYRFALDPNQAQLADLRRHAGAARFVFNWGLARVKAALSQRDAEQSYGLTGDMLTPVPWTLPALRLAWNEAKSTV
APWWSACSKEAYSSGLDQLARGLKNFTDSRTGKRKGKRVGFPRFKKRGRARDSFRYTTGAYGPASNLQVKLPRLGRVKVH
EAMGALTGRLAAGSARLLGATVSRTAGRWFVAFTVEIDREIPQNPSARQRAGGAVGVDAGVKHLAVLSTGEQVDNPRPLT
RSLRRLRTASRACARSKPGSAGRRQRAAALGHLHAHIAHQRRDGLHKLTTRLTKNHDVIVVEDLHVAGMVRNRRLARAVS
DTGMAEIRRQLTYKTVWYGSRLVVADRWYPSSKTCSGCGWRNPSLTPADRTFACQSCGLVIDRDLNAAINLRNLVAASTS
ETENARGADRRTQPAGRVAGKREPGTVGMTPCERVRPGVPHREARRHDRALPGAHMQRRWH
>Mature_461_residues
MKVLQAYRFALDPNQAQLADLRRHAGAARFVFNWGLARVKAALSQRDAEQSYGLTGDMLTPVPWTLPALRLAWNEAKSTV
APWWSACSKEAYSSGLDQLARGLKNFTDSRTGKRKGKRVGFPRFKKRGRARDSFRYTTGAYGPASNLQVKLPRLGRVKVH
EAMGALTGRLAAGSARLLGATVSRTAGRWFVAFTVEIDREIPQNPSARQRAGGAVGVDAGVKHLAVLSTGEQVDNPRPLT
RSLRRLRTASRACARSKPGSAGRRQRAAALGHLHAHIAHQRRDGLHKLTTRLTKNHDVIVVEDLHVAGMVRNRRLARAVS
DTGMAEIRRQLTYKTVWYGSRLVVADRWYPSSKTCSGCGWRNPSLTPADRTFACQSCGLVIDRDLNAAINLRNLVAASTS
ETENARGADRRTQPAGRVAGKREPGTVGMTPCERVRPGVPHREARRHDRALPGAHMQRRWH

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=392, Percent_Identity=33.1632653061224, Blast_Score=174, Evalue=8e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 50892; Mature: 50892

Theoretical pI: Translated: 11.97; Mature: 11.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLQAYRFALDPNQAQLADLRRHAGAARFVFNWGLARVKAALSQRDAEQSYGLTGDMLT
CCHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PVPWTLPALRLAWNEAKSTVAPWWSACSKEAYSSGLDQLARGLKNFTDSRTGKRKGKRVG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCC
FPRFKKRGRARDSFRYTTGAYGPASNLQVKLPRLGRVKVHEAMGALTGRLAAGSARLLGA
CHHHHHHCCCCCCCEEECCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHH
TVSRTAGRWFVAFTVEIDREIPQNPSARQRAGGAVGVDAGVKHLAVLSTGEQVDNPRPLT
HHHHCCCCEEEEEEEEECCCCCCCCCHHHHCCCCCCHHHHHHHEEEEECCCCCCCCCHHH
RSLRRLRTASRACARSKPGSAGRRQRAAALGHLHAHIAHQRRDGLHKLTTRLTKNHDVIV
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
VEDLHVAGMVRNRRLARAVSDTGMAEIRRQLTYKTVWYGSRLVVADRWYPSSKTCSGCGW
EECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEECCEEEEEECCCCCCCCCCCCCC
RNPSLTPADRTFACQSCGLVIDRDLNAAINLRNLVAASTSETENARGADRRTQPAGRVAG
CCCCCCCCCCHHHHHHCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCC
KREPGTVGMTPCERVRPGVPHREARRHDRALPGAHMQRRWH
CCCCCCCCCCCHHHCCCCCCHHHHHHHHCCCCCHHHHCCCC
>Mature Secondary Structure
MKVLQAYRFALDPNQAQLADLRRHAGAARFVFNWGLARVKAALSQRDAEQSYGLTGDMLT
CCHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PVPWTLPALRLAWNEAKSTVAPWWSACSKEAYSSGLDQLARGLKNFTDSRTGKRKGKRVG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCC
FPRFKKRGRARDSFRYTTGAYGPASNLQVKLPRLGRVKVHEAMGALTGRLAAGSARLLGA
CHHHHHHCCCCCCCEEECCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHH
TVSRTAGRWFVAFTVEIDREIPQNPSARQRAGGAVGVDAGVKHLAVLSTGEQVDNPRPLT
HHHHCCCCEEEEEEEEECCCCCCCCCHHHHCCCCCCHHHHHHHEEEEECCCCCCCCCHHH
RSLRRLRTASRACARSKPGSAGRRQRAAALGHLHAHIAHQRRDGLHKLTTRLTKNHDVIV
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
VEDLHVAGMVRNRRLARAVSDTGMAEIRRQLTYKTVWYGSRLVVADRWYPSSKTCSGCGW
EECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEECCEEEEEECCCCCCCCCCCCCC
RNPSLTPADRTFACQSCGLVIDRDLNAAINLRNLVAASTSETENARGADRRTQPAGRVAG
CCCCCCCCCCHHHHHHCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCC
KREPGTVGMTPCERVRPGVPHREARRHDRALPGAHMQRRWH
CCCCCCCCCCCHHHCCCCCCHHHHHHHHCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]