| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316698
Identifier: 158316698
GI number: 158316698
Start: 5926555
End: 5927526
Strand: Reverse
Name: 158316698
Synonym: Franean1_4936
Alternate gene names: NA
Gene position: 5927526-5926555 (Counterclockwise)
Preceding gene: 158316701
Following gene: 158316697
Centisome position: 65.99
GC content: 75.21
Gene sequence:
>972_bases GTGGTGACGTACGAGGTCGAGCGGACAGCCGTGAACGTGCCCCTGCCCACGCCGGACAACGCGGTGACGGTGGTGCCGCC CCCGGGCGAGGGCCCGGGCTTCTGGGCCGGGGCGCCGAGCGCCGTGCTCGTCGACGGCATGTTCTACCTCGCCTACCGGC TGCGCCGCCCGGTCGGGCACGGCCGCGGGTACGCGGTGGTGATCGCCCGTTCCGACGACGGCGAGCGGTTCACCCCGATC CACACGATTCACCGGGACGCCTTCCCCGCGGAGTCGCTGGAGCGGCCGGCCCTGGTGCCCACCCCGTGGGGGAGCTGGCG GCTCTACGTGAGCTGCGCGACGCCGGACAGCCCGCACTGGTGGGTCGACGTGCTCGAGGCGGACGCGCCGGACGCCTTCG ACCCCGCCACCCGGCGCACCGTGCTCCCCGGCGACCGGTTGACCGCGGTCAAGGACCCGGTCGTCGTCTGGCATGACGGC CTGTGGCATCTGTGGGCCTCCTGCCATCCGCTGGACGACCCGGCGGCCACCGACCGCATGGACAGCCGGCACGCGACCAG CCCGGACGGGCTGACCTGGACGTGGCAGGGCATGGCGCTCGCGCCCCGGCCCGGTGAGTGGGACGCCCGCGGGGTCCGGA TCTCGGCCGTCCTGCTCGGCGACGCCGGTGACGTCGGCAACGGCGACGGGGGCGGTCTCGACGGCGCGGGCGCCCGGCTG GACGCCGTCGCCTACTACGACGGCCGGGCCAGCGCGGCGGAGAACTGGTCGGAGCGCACCGGCATCGCCGTCGGTGGGTT CGACGGGTTCGCGGCGGTCGGCGACACTCCGATCGCGGTCTCACCGCACGGCGGCGCGCTGCGGTATGTCAGCGTGGTGC CGCTGCCCGATGGCGGCCACCGGCTTTACTACGAGCAGGCCCGTCCCGACGGTTCGCACGAGCTGCGCACCGACCTGCAC CCCCCGCGCTGA
Upstream 100 bases:
>100_bases GACGCTACGGTCGAGGCCCTGGTCAGAACGGATCAACTGCGGCGAGTGACCGACCGTGTCGGCTGCCGGGTTTGTTCATC AGCTAAGTAGGATTCCGCCC
Downstream 100 bases:
>100_bases CCCGGCCCCGGCCCACCAGGGCAGCGGGGTGACGCCGTGGCGGGAGGGTCTGCGCGGCTGGCTGCTCGCCGGGACGGAGC AGGCCCGCCGCCATCCCGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 323; Mature: 323
Protein sequence:
>323_residues MVTYEVERTAVNVPLPTPDNAVTVVPPPGEGPGFWAGAPSAVLVDGMFYLAYRLRRPVGHGRGYAVVIARSDDGERFTPI HTIHRDAFPAESLERPALVPTPWGSWRLYVSCATPDSPHWWVDVLEADAPDAFDPATRRTVLPGDRLTAVKDPVVVWHDG LWHLWASCHPLDDPAATDRMDSRHATSPDGLTWTWQGMALAPRPGEWDARGVRISAVLLGDAGDVGNGDGGGLDGAGARL DAVAYYDGRASAAENWSERTGIAVGGFDGFAAVGDTPIAVSPHGGALRYVSVVPLPDGGHRLYYEQARPDGSHELRTDLH PPR
Sequences:
>Translated_323_residues MVTYEVERTAVNVPLPTPDNAVTVVPPPGEGPGFWAGAPSAVLVDGMFYLAYRLRRPVGHGRGYAVVIARSDDGERFTPI HTIHRDAFPAESLERPALVPTPWGSWRLYVSCATPDSPHWWVDVLEADAPDAFDPATRRTVLPGDRLTAVKDPVVVWHDG LWHLWASCHPLDDPAATDRMDSRHATSPDGLTWTWQGMALAPRPGEWDARGVRISAVLLGDAGDVGNGDGGGLDGAGARL DAVAYYDGRASAAENWSERTGIAVGGFDGFAAVGDTPIAVSPHGGALRYVSVVPLPDGGHRLYYEQARPDGSHELRTDLH PPR >Mature_323_residues MVTYEVERTAVNVPLPTPDNAVTVVPPPGEGPGFWAGAPSAVLVDGMFYLAYRLRRPVGHGRGYAVVIARSDDGERFTPI HTIHRDAFPAESLERPALVPTPWGSWRLYVSCATPDSPHWWVDVLEADAPDAFDPATRRTVLPGDRLTAVKDPVVVWHDG LWHLWASCHPLDDPAATDRMDSRHATSPDGLTWTWQGMALAPRPGEWDARGVRISAVLLGDAGDVGNGDGGGLDGAGARL DAVAYYDGRASAAENWSERTGIAVGGFDGFAAVGDTPIAVSPHGGALRYVSVVPLPDGGHRLYYEQARPDGSHELRTDLH PPR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34723; Mature: 34723
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: PS00205 TRANSFERRIN_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTYEVERTAVNVPLPTPDNAVTVVPPPGEGPGFWAGAPSAVLVDGMFYLAYRLRRPVGH CEEEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC GRGYAVVIARSDDGERFTPIHTIHRDAFPAESLERPALVPTPWGSWRLYVSCATPDSPHW CCCEEEEEEECCCCCEECCEEEECCCCCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCE WVDVLEADAPDAFDPATRRTVLPGDRLTAVKDPVVVWHDGLWHLWASCHPLDDPAATDRM EEEEEECCCCCCCCCCCCEEECCCCCEEEECCCEEEEECCHHHHHHCCCCCCCCCHHCCC DSRHATSPDGLTWTWQGMALAPRPGEWDARGVRISAVLLGDAGDVGNGDGGGLDGAGARL CCCCCCCCCCEEEEECCEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEE DAVAYYDGRASAAENWSERTGIAVGGFDGFAAVGDTPIAVSPHGGALRYVSVVPLPDGGH EEEEEECCCCCHHHCHHHHCCEEEECCCCCHHCCCCCEEECCCCCEEEEEEEEECCCCCC RLYYEQARPDGSHELRTDLHPPR EEEEECCCCCCCCHHHCCCCCCC >Mature Secondary Structure MVTYEVERTAVNVPLPTPDNAVTVVPPPGEGPGFWAGAPSAVLVDGMFYLAYRLRRPVGH CEEEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC GRGYAVVIARSDDGERFTPIHTIHRDAFPAESLERPALVPTPWGSWRLYVSCATPDSPHW CCCEEEEEEECCCCCEECCEEEECCCCCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCE WVDVLEADAPDAFDPATRRTVLPGDRLTAVKDPVVVWHDGLWHLWASCHPLDDPAATDRM EEEEEECCCCCCCCCCCCEEECCCCCEEEECCCEEEEECCHHHHHHCCCCCCCCCHHCCC DSRHATSPDGLTWTWQGMALAPRPGEWDARGVRISAVLLGDAGDVGNGDGGGLDGAGARL CCCCCCCCCCEEEEECCEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEE DAVAYYDGRASAAENWSERTGIAVGGFDGFAAVGDTPIAVSPHGGALRYVSVVPLPDGGH EEEEEECCCCCHHHCHHHHCCEEEECCCCCHHCCCCCEEECCCCCEEEEEEEEECCCCCC RLYYEQARPDGSHELRTDLHPPR EEEEECCCCCCCCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA