| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316697
Identifier: 158316697
GI number: 158316697
Start: 5924538
End: 5926526
Strand: Reverse
Name: 158316697
Synonym: Franean1_4935
Alternate gene names: NA
Gene position: 5926526-5924538 (Counterclockwise)
Preceding gene: 158316698
Following gene: 158316696
Centisome position: 65.98
GC content: 71.49
Gene sequence:
>1989_bases GTGACGCCGTGGCGGGAGGGTCTGCGCGGCTGGCTGCTCGCCGGGACGGAGCAGGCCCGCCGCCATCCCGGTCCGCACGC GCAGCCCGAACCGCACCATCCCCGCCACCACTGGTGGCGGGTCATGTGCCTGACCGGCGTCGACTACTTCTCCACGCTGG GCTACCAGCCGGGCATCGCCATCCTCGCGGCCGGCGCGGTGAGCCCGATCGCCACAGCGGTGCTCGTCGCCGTGACCCTG TTCGGGGCGCTGCCGGTCTACCGGCGGGTCGCCGGCGAGAGCCCGCGTGGTGAGGGCTCGATCGCGATCCTGGAGAAGCA GCTCTCCTGGTGGAAGGGCAAGCTGCTGGTCCTGGTGCTCCTCGGCTTCGCCTGCACCGACTTCCTGATCACGATCACCC TCTCGGCCGCGGACGCCACCGCGCACATCCTGGAGAACCCGTACGCGCCGGACCTGCTCGCCGGCCATGAGGTCGCCGTC ACGCTGGTGCTCCTGGCCCTGCTCGCGGCCGTGTTCCTGCGCGGGTTCACCGAGGCGGTGGGGATCGCCGTCGTCCTGGT CGTGGTGTACCTGGCGCTGAACGTGGTCGTCATCGTGGTGTCGCTGTACAAGGTCGCCACCCATCCCTCCCTGCTCGACG ACTGGCACGCGCTGCTGGTGGCCGAGCATCCCGACGCGTTCGCGCTGGTGGGCGTGGCCCTGATCGTCTTCCCGAAGCTC GCGCTGGGACTCTCCGGCTTCGAGACCGGTGTAGCGGTGATGCCGCTGATCCGCGGCGGCCCCGATAGCCCCGACGACAC CGCCGACACCGCCGACACCGCCGACACCGCCGACACCGACGACACCGACGCGAACCCCGCCGGCCGGATCCGCGGCGCGC GGCGGCTGCTCACCACGGCAGCGCTGATCATGGCCGTGCTGCTGCTCACCAGCAGCCTCGCGACAACGGTCCTCATCCCC GAGCGGCTCGCGGAGCCCGGCGGCCCGGCGAACGGGCGGGCGCTGGCGTACCTGGCGCACCAGGAGCTGGGTAACGCCTT CGGCACCGCGTATGACGTCAGCACGATCGCGATCCTGTGGTTCGCCGGCGCCTCGGCGCTGGCCGGCCTGCTCAACCTCG TGCCCCGCTACCTCCCCAGGTACGGGATGGCACCGCACTGGGCCCGGGCGGTGCGCCCGCTGGTCCTGGTCTTCACCGCC ATCGGCTTCGCGGTCACGATCATCTTCCGGGCGAGCGTGGACAAGCAGGGCGGCGCCTACGCCACCGGGGTGCTCGTCCT GATCACCTCGGCGTCGGTCGCTGTCACGATCTCCGCCGCGCGCCGCGGGCGGCGGCGGGCGGCCTTCGGGTTCGGCGCCA TCGCCGCCGTGTTCGTCTACACGACCGTCGCGAACGTCATCGAGCGGCCGGACGGGCTCATCATCGGTTCGATCTTCATC CTGTCAATCCTGGTGATCTCCTTCCTCTCCCGGGCCGTGCGGTCCTTCGAGTTGCGGGTCACCGGCGTGCGCCTCGACGA GACGGCCACCCGGTGGGTCACCGAGGCGGCCCGTTGCGGGGCGCTGCACCTGGTCGCCAACGAGTTCGACACCGGCGACG CCGCCGAGTACGCCGACAAGGCCAGCAAGGCACACGAGGTGCTGCACGTCCCGCGCGCGGCCCGCCTGCTGTTCCTCGAG GTGGTCGTCCCGGACTCGTCGGAGTTCGAGGGGCGGCTCGACGTCTGCGGACGGGAGCGGCACGGGTACCGGATCCTGCA GCTGACCAGCAACTCCGTCCCGAACGCGATCGCGGCCCTGCTCCTGCACCTGCGCGACCTCACCGGGACCAGGCCGAACG TGTACTTCGAGTGGTCCGAGGGCAACCCGCTGCAGAATCTGGCGCGCTTCGTGTTCTTCGGAGTCGGCGAGGTCGCCTCG ACGACCCGGGAGATCCTCCGCGAGGCCGAGCCCGACCCACAGCGCCGCCCGTTCGTCCACGTGGCCTGA
Upstream 100 bases:
>100_bases CGGCTTTACTACGAGCAGGCCCGTCCCGACGGTTCGCACGAGCTGCGCACCGACCTGCACCCCCCGCGCTGACCCGGCCC CGGCCCACCAGGGCAGCGGG
Downstream 100 bases:
>100_bases GCGGCTCCGGCGAGGGGGTGTGGCGCTCGCCCATGGCGCCGGCCCGAGGACGGTCGACCGCCGTAGCCTCGTCCCTCGTG AGACGAGGCGGCAACGGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: Regulatory Protein LysR Family Signature Domain Protein; Integral Membrane Protein; Regulatory Protein
Number of amino acids: Translated: 662; Mature: 661
Protein sequence:
>662_residues MTPWREGLRGWLLAGTEQARRHPGPHAQPEPHHPRHHWWRVMCLTGVDYFSTLGYQPGIAILAAGAVSPIATAVLVAVTL FGALPVYRRVAGESPRGEGSIAILEKQLSWWKGKLLVLVLLGFACTDFLITITLSAADATAHILENPYAPDLLAGHEVAV TLVLLALLAAVFLRGFTEAVGIAVVLVVVYLALNVVVIVVSLYKVATHPSLLDDWHALLVAEHPDAFALVGVALIVFPKL ALGLSGFETGVAVMPLIRGGPDSPDDTADTADTADTADTDDTDANPAGRIRGARRLLTTAALIMAVLLLTSSLATTVLIP ERLAEPGGPANGRALAYLAHQELGNAFGTAYDVSTIAILWFAGASALAGLLNLVPRYLPRYGMAPHWARAVRPLVLVFTA IGFAVTIIFRASVDKQGGAYATGVLVLITSASVAVTISAARRGRRRAAFGFGAIAAVFVYTTVANVIERPDGLIIGSIFI LSILVISFLSRAVRSFELRVTGVRLDETATRWVTEAARCGALHLVANEFDTGDAAEYADKASKAHEVLHVPRAARLLFLE VVVPDSSEFEGRLDVCGRERHGYRILQLTSNSVPNAIAALLLHLRDLTGTRPNVYFEWSEGNPLQNLARFVFFGVGEVAS TTREILREAEPDPQRRPFVHVA
Sequences:
>Translated_662_residues MTPWREGLRGWLLAGTEQARRHPGPHAQPEPHHPRHHWWRVMCLTGVDYFSTLGYQPGIAILAAGAVSPIATAVLVAVTL FGALPVYRRVAGESPRGEGSIAILEKQLSWWKGKLLVLVLLGFACTDFLITITLSAADATAHILENPYAPDLLAGHEVAV TLVLLALLAAVFLRGFTEAVGIAVVLVVVYLALNVVVIVVSLYKVATHPSLLDDWHALLVAEHPDAFALVGVALIVFPKL ALGLSGFETGVAVMPLIRGGPDSPDDTADTADTADTADTDDTDANPAGRIRGARRLLTTAALIMAVLLLTSSLATTVLIP ERLAEPGGPANGRALAYLAHQELGNAFGTAYDVSTIAILWFAGASALAGLLNLVPRYLPRYGMAPHWARAVRPLVLVFTA IGFAVTIIFRASVDKQGGAYATGVLVLITSASVAVTISAARRGRRRAAFGFGAIAAVFVYTTVANVIERPDGLIIGSIFI LSILVISFLSRAVRSFELRVTGVRLDETATRWVTEAARCGALHLVANEFDTGDAAEYADKASKAHEVLHVPRAARLLFLE VVVPDSSEFEGRLDVCGRERHGYRILQLTSNSVPNAIAALLLHLRDLTGTRPNVYFEWSEGNPLQNLARFVFFGVGEVAS TTREILREAEPDPQRRPFVHVA >Mature_661_residues TPWREGLRGWLLAGTEQARRHPGPHAQPEPHHPRHHWWRVMCLTGVDYFSTLGYQPGIAILAAGAVSPIATAVLVAVTLF GALPVYRRVAGESPRGEGSIAILEKQLSWWKGKLLVLVLLGFACTDFLITITLSAADATAHILENPYAPDLLAGHEVAVT LVLLALLAAVFLRGFTEAVGIAVVLVVVYLALNVVVIVVSLYKVATHPSLLDDWHALLVAEHPDAFALVGVALIVFPKLA LGLSGFETGVAVMPLIRGGPDSPDDTADTADTADTADTDDTDANPAGRIRGARRLLTTAALIMAVLLLTSSLATTVLIPE RLAEPGGPANGRALAYLAHQELGNAFGTAYDVSTIAILWFAGASALAGLLNLVPRYLPRYGMAPHWARAVRPLVLVFTAI GFAVTIIFRASVDKQGGAYATGVLVLITSASVAVTISAARRGRRRAAFGFGAIAAVFVYTTVANVIERPDGLIIGSIFIL SILVISFLSRAVRSFELRVTGVRLDETATRWVTEAARCGALHLVANEFDTGDAAEYADKASKAHEVLHVPRAARLLFLEV VVPDSSEFEGRLDVCGRERHGYRILQLTSNSVPNAIAALLLHLRDLTGTRPNVYFEWSEGNPLQNLARFVFFGVGEVAST TREILREAEPDPQRRPFVHVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70995; Mature: 70864
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPWREGLRGWLLAGTEQARRHPGPHAQPEPHHPRHHWWRVMCLTGVDYFSTLGYQPGIA CCCHHHHHHHHEECCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCHH ILAAGAVSPIATAVLVAVTLFGALPVYRRVAGESPRGEGSIAILEKQLSWWKGKLLVLVL HEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH LGFACTDFLITITLSAADATAHILENPYAPDLLAGHEVAVTLVLLALLAAVFLRGFTEAV HHHHHHHHHHEEEEECCHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHH GIAVVLVVVYLALNVVVIVVSLYKVATHPSLLDDWHALLVAEHPDAFALVGVALIVFPKL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEEECCCCHHHHHHHHHHHHHHH ALGLSGFETGVAVMPLIRGGPDSPDDTADTADTADTADTDDTDANPAGRIRGARRLLTTA HHCCCCHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH ALIMAVLLLTSSLATTVLIPERLAEPGGPANGRALAYLAHQELGNAFGTAYDVSTIAILW HHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCEEEEHHHHHHHHHHCCHHHHHHHHHHH FAGASALAGLLNLVPRYLPRYGMAPHWARAVRPLVLVFTAIGFAVTIIFRASVDKQGGAY HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH ATGVLVLITSASVAVTISAARRGRRRAAFGFGAIAAVFVYTTVANVIERPDGLIIGSIFI HHHHHHEEECCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHH LSILVISFLSRAVRSFELRVTGVRLDETATRWVTEAARCGALHLVANEFDTGDAAEYADK HHHHHHHHHHHHHHHHEEEEEEEEECHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHH ASKAHEVLHVPRAARLLFLEVVVPDSSEFEGRLDVCGRERHGYRILQLTSNSVPNAIAAL HHHHHHHHHCCHHHHEEEEEEECCCCCCCCCCHHCCCCCCCCEEEEEECCCCCHHHHHHH LLHLRDLTGTRPNVYFEWSEGNPLQNLARFVFFGVGEVASTTREILREAEPDPQRRPFVH HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCEE VA CC >Mature Secondary Structure TPWREGLRGWLLAGTEQARRHPGPHAQPEPHHPRHHWWRVMCLTGVDYFSTLGYQPGIA CCHHHHHHHHEECCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCHH ILAAGAVSPIATAVLVAVTLFGALPVYRRVAGESPRGEGSIAILEKQLSWWKGKLLVLVL HEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH LGFACTDFLITITLSAADATAHILENPYAPDLLAGHEVAVTLVLLALLAAVFLRGFTEAV HHHHHHHHHHEEEEECCHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHH GIAVVLVVVYLALNVVVIVVSLYKVATHPSLLDDWHALLVAEHPDAFALVGVALIVFPKL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEEECCCCHHHHHHHHHHHHHHH ALGLSGFETGVAVMPLIRGGPDSPDDTADTADTADTADTDDTDANPAGRIRGARRLLTTA HHCCCCHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH ALIMAVLLLTSSLATTVLIPERLAEPGGPANGRALAYLAHQELGNAFGTAYDVSTIAILW HHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCEEEEHHHHHHHHHHCCHHHHHHHHHHH FAGASALAGLLNLVPRYLPRYGMAPHWARAVRPLVLVFTAIGFAVTIIFRASVDKQGGAY HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH ATGVLVLITSASVAVTISAARRGRRRAAFGFGAIAAVFVYTTVANVIERPDGLIIGSIFI HHHHHHEEECCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHH LSILVISFLSRAVRSFELRVTGVRLDETATRWVTEAARCGALHLVANEFDTGDAAEYADK HHHHHHHHHHHHHHHHEEEEEEEEECHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHH ASKAHEVLHVPRAARLLFLEVVVPDSSEFEGRLDVCGRERHGYRILQLTSNSVPNAIAAL HHHHHHHHHCCHHHHEEEEEEECCCCCCCCCCHHCCCCCCCCEEEEEECCCCCHHHHHHH LLHLRDLTGTRPNVYFEWSEGNPLQNLARFVFFGVGEVASTTREILREAEPDPQRRPFVH HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCEE VA CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA