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The map label for this gene is pafB [H]

Identifier: 158316635

GI number: 158316635

Start: 5845040

End: 5846245

Strand: Reverse

Name: pafB [H]

Synonym: Franean1_4872

Alternate gene names: 158316635

Gene position: 5846245-5845040 (Counterclockwise)

Preceding gene: 158316636

Following gene: 158316634

Centisome position: 65.09

GC content: 75.12

Gene sequence:

>1206_bases
GTGCGGCTAGCCTCATCCGATGTGTCCCGCCGACGGCTGGAGCGCCTGCTCAACCTGACGATGTGCCTGATGGCGACATC
GCGGTTCCTCACCGTGTCCCAGATCGGGGAGATGGTGGAGGGGTACGACCCGGGGGAGTCGGAGGAGGCGCAGGAGGCCT
ACCGGCGCATGTTCGAGCGCGACAAGCAGTACCTGCGCGAGCTCGGTATCCCGGTCGAGACCGGCCAGGATTCAGCGTTC
AGCGACGAGCTCGGCTACCGCATCCGCCGCGGCGACTACGCGCTCGGGGAGATCTCCCTCGACCCGGACGAGTTCGCGGC
GCTCGCGCTGGCCGCCTCGCTGTGGTCGAGCGCGACCCTCGCCGCCCCGGCCGCGAGCGCGCTGCGCAAACTGGCAGCCG
CCGGTGCCCCGGTGCGCCCCGCCGGGCTGGGCGGGGCCGATCTCCTGGCGGGACCCTCCTCGGCGCTCGGGCCCGGCGGG
TTCGAGGGCTTCGAGCCGCGGGTCGACACGGCCGAGCCGGCCTTCGAGGCGGTACTCGCCGCCGTCCAGGCCGGCCGGGT
GGTGCGCTTCCCCTACCGCCGTCCCGGGCAGACCGAGGACACCGAGCGGCACGTGCAGCCGTGGGGGGTGCTGTCCTGGC
GGGGCCGCTGGTACCTGGTCGGGCACGACCTGCGGCGGGCCGCGCCACGGGTGTTCCGGCTCTCCAGGGTGACCGGCGGA
GTGCGTGCGGTCGGCCCGCCCGGCGCGTTCACCGTCCCCCCCGATGTGGACCTGCGGGCGATGATCTCCTTGACGGAGCC
GCCCGAGCACATCCGCAGCGCGTTGCTGCGGGTCCGGCGCGGGTGCGGGCACGCGCTGCGCCGCCGGGCCCGCCCGGCGG
AGGCGCCGGGTCCTGACCTGCCCATGAGCCCGGTGCCGGACACCGACCTGCTGAGCGTCGACTTCTCCGACGTGGAGCGG
TTCGCCCACTGGATCGTCGGCTACGGGCCTGACGTGACCGTCCTCGGTCCCGCAGACCTGCGCGCCGAGGTCATCCGCCG
GCTGCGGGCCACCCTGGAAGCCACGGCGCCCGAACGCGGCACCCGGCCCGCCGGAGCCACGTCCACCGACGGTGCTCCCG
GTAGCGACGGTGCTCCCGGTAGCGATGTGCCGGGCGGCGAGCACGGCGGGCGGGCCGGATGGCTGGCGAGGACCGGGCCG
CGGTGA

Upstream 100 bases:

>100_bases
CGCGTCGCGTCGCCGCCCCGGCCGGGCAAGCCCTGGCCGGGGCCACGACGGTCCTCGCCGCCCCGCGGCGGCGGCGGGGC
GGTTACCACGTTGACGTCGA

Downstream 100 bases:

>100_bases
GCGGCTCCACCGACCGTTTCAGCAGGCTGCTGGCCCTCGTGCCCTGGCTGCGTGCTCATCCCGGCGTGTCACTCGAGGCC
GCGGCCGCGGAGTTCGACGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MRLASSDVSRRRLERLLNLTMCLMATSRFLTVSQIGEMVEGYDPGESEEAQEAYRRMFERDKQYLRELGIPVETGQDSAF
SDELGYRIRRGDYALGEISLDPDEFAALALAASLWSSATLAAPAASALRKLAAAGAPVRPAGLGGADLLAGPSSALGPGG
FEGFEPRVDTAEPAFEAVLAAVQAGRVVRFPYRRPGQTEDTERHVQPWGVLSWRGRWYLVGHDLRRAAPRVFRLSRVTGG
VRAVGPPGAFTVPPDVDLRAMISLTEPPEHIRSALLRVRRGCGHALRRRARPAEAPGPDLPMSPVPDTDLLSVDFSDVER
FAHWIVGYGPDVTVLGPADLRAEVIRRLRATLEATAPERGTRPAGATSTDGAPGSDGAPGSDVPGGEHGGRAGWLARTGP
R

Sequences:

>Translated_401_residues
MRLASSDVSRRRLERLLNLTMCLMATSRFLTVSQIGEMVEGYDPGESEEAQEAYRRMFERDKQYLRELGIPVETGQDSAF
SDELGYRIRRGDYALGEISLDPDEFAALALAASLWSSATLAAPAASALRKLAAAGAPVRPAGLGGADLLAGPSSALGPGG
FEGFEPRVDTAEPAFEAVLAAVQAGRVVRFPYRRPGQTEDTERHVQPWGVLSWRGRWYLVGHDLRRAAPRVFRLSRVTGG
VRAVGPPGAFTVPPDVDLRAMISLTEPPEHIRSALLRVRRGCGHALRRRARPAEAPGPDLPMSPVPDTDLLSVDFSDVER
FAHWIVGYGPDVTVLGPADLRAEVIRRLRATLEATAPERGTRPAGATSTDGAPGSDGAPGSDVPGGEHGGRAGWLARTGP
R
>Mature_401_residues
MRLASSDVSRRRLERLLNLTMCLMATSRFLTVSQIGEMVEGYDPGESEEAQEAYRRMFERDKQYLRELGIPVETGQDSAF
SDELGYRIRRGDYALGEISLDPDEFAALALAASLWSSATLAAPAASALRKLAAAGAPVRPAGLGGADLLAGPSSALGPGG
FEGFEPRVDTAEPAFEAVLAAVQAGRVVRFPYRRPGQTEDTERHVQPWGVLSWRGRWYLVGHDLRRAAPRVFRLSRVTGG
VRAVGPPGAFTVPPDVDLRAMISLTEPPEHIRSALLRVRRGCGHALRRRARPAEAPGPDLPMSPVPDTDLLSVDFSDVER
FAHWIVGYGPDVTVLGPADLRAEVIRRLRATLEATAPERGTRPAGATSTDGAPGSDGAPGSDVPGGEHGGRAGWLARTGP
R

Specific function: Does not seem to be involved in pupylation or substrate degradation [H]

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pafB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43052; Mature: 43052

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLASSDVSRRRLERLLNLTMCLMATSRFLTVSQIGEMVEGYDPGESEEAQEAYRRMFER
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
DKQYLRELGIPVETGQDSAFSDELGYRIRRGDYALGEISLDPDEFAALALAASLWSSATL
HHHHHHHCCCCCCCCCCCCHHHHHCCEEECCCEEEEEECCCHHHHHHHHHHHHHHHCHHH
AAPAASALRKLAAAGAPVRPAGLGGADLLAGPSSALGPGGFEGFEPRVDTAEPAFEAVLA
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
AVQAGRVVRFPYRRPGQTEDTERHVQPWGVLSWRGRWYLVGHDLRRAAPRVFRLSRVTGG
HHHCCCEEECCCCCCCCCCCHHHHCCCCCEEEECCEEEEECCHHHHHHHHHHHHHHHCCC
VRAVGPPGAFTVPPDVDLRAMISLTEPPEHIRSALLRVRRGCGHALRRRARPAEAPGPDL
CEECCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PMSPVPDTDLLSVDFSDVERFAHWIVGYGPDVTVLGPADLRAEVIRRLRATLEATAPERG
CCCCCCCCCEEECCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCC
TRPAGATSTDGAPGSDGAPGSDVPGGEHGGRAGWLARTGPR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRLASSDVSRRRLERLLNLTMCLMATSRFLTVSQIGEMVEGYDPGESEEAQEAYRRMFER
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
DKQYLRELGIPVETGQDSAFSDELGYRIRRGDYALGEISLDPDEFAALALAASLWSSATL
HHHHHHHCCCCCCCCCCCCHHHHHCCEEECCCEEEEEECCCHHHHHHHHHHHHHHHCHHH
AAPAASALRKLAAAGAPVRPAGLGGADLLAGPSSALGPGGFEGFEPRVDTAEPAFEAVLA
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
AVQAGRVVRFPYRRPGQTEDTERHVQPWGVLSWRGRWYLVGHDLRRAAPRVFRLSRVTGG
HHHCCCEEECCCCCCCCCCCHHHHCCCCCEEEECCEEEEECCHHHHHHHHHHHHHHHCCC
VRAVGPPGAFTVPPDVDLRAMISLTEPPEHIRSALLRVRRGCGHALRRRARPAEAPGPDL
CEECCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PMSPVPDTDLLSVDFSDVERFAHWIVGYGPDVTVLGPADLRAEVIRRLRATLEATAPERG
CCCCCCCCCEEECCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCC
TRPAGATSTDGAPGSDGAPGSDVPGGEHGGRAGWLARTGPR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]