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The map label for this gene is pafC [H]

Identifier: 158316634

GI number: 158316634

Start: 5844078

End: 5845043

Strand: Reverse

Name: pafC [H]

Synonym: Franean1_4871

Alternate gene names: 158316634

Gene position: 5845043-5844078 (Counterclockwise)

Preceding gene: 158316635

Following gene: 158316633

Centisome position: 65.07

GC content: 74.12

Gene sequence:

>966_bases
GTGAGCGGCTCCACCGACCGTTTCAGCAGGCTGCTGGCCCTCGTGCCCTGGCTGCGTGCTCATCCCGGCGTGTCACTCGA
GGCCGCGGCCGCGGAGTTCGACGTCACGGTGCGCCAGCTGCGCGACGACCTCGACCTGCTGTTCGTCTGCGGGCTGCCCG
GCGGCGCGCCCGGCGACCTCATCGACGTCAGCTACTCCGGCGACCAGGTCACCGTCGTTGACCCCCAGACGCTCGACCGC
CCGCTGCGGCTGTCGGCGGACGAGGCCACCGCGCTGCTCGTCGCCGCCCGGGCGCTCACCGACGTCCCCGGCCTGGCCGG
GCGCGAGGCGCTCGATCAGGCACTGCGCAAGGTCGAGGACGCCGTCGGCAACGAGCCGGCCGGGCATGTGCGTGTCGCGC
TCGACACCCACGACGAGGTGCTCGCCATCCTGCAGGGGGCGATCAGGGACCGCCGGCGCGTCCGGTTGCGTTACCTGGTG
TGGTCGCGGGACGAGATGACGGTGCGCGACGTCGACCCGATGCGGGTGCTCGTCCGGGACGGGCACTGGTACCTCGAGGG
ATGGTGCCACCGGGCGTCGGCGGTGCGGCTGTTCCGGCTCGACCGCATCGACGGCCGCGGTGGGGCCGTCGTCCTGGACG
TCGTCGCGCAGCCGCCGCCGACCGCGACGCCGCGCGACACCGCGGACGGCGTGTACCGGCCGGGGCCGGACGACATCCCG
GTGCGCCTCGACCTGGAGCCGCAGGCCCGCTGGGTCGTCGACTACTACCCTGTCTCCGACGTGTGTGAGCTGCCCGACGG
GGGAGTGTCGGTGCTGCTGCGGGTCTCCGAGCTGTCGTGGCTGAACCGGCTGGTCCTGGGCCTGGGTGCGCAGGTGCGGC
GGGTCGAGCCGGCCTCGGTGGCCGCGCGGGTCCACGAGCTGGCCGATCGTGCCCTCGCCGCCTACGCCGAGGAGCCCATA
GGGTGA

Upstream 100 bases:

>100_bases
CCACCGACGGTGCTCCCGGTAGCGACGGTGCTCCCGGTAGCGATGTGCCGGGCGGCGAGCACGGCGGGCGGGCCGGATGG
CTGGCGAGGACCGGGCCGCG

Downstream 100 bases:

>100_bases
CCGGTGTGCTGCTGCTGTTCGCTCACCTCGTGCTCACCGTCGGTTCGCTCGGCGTGCTCGTGCTGTGCGCGCTGCGCCTG
TGGGGCAAGGTCCGCGCGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 320

Protein sequence:

>321_residues
MSGSTDRFSRLLALVPWLRAHPGVSLEAAAAEFDVTVRQLRDDLDLLFVCGLPGGAPGDLIDVSYSGDQVTVVDPQTLDR
PLRLSADEATALLVAARALTDVPGLAGREALDQALRKVEDAVGNEPAGHVRVALDTHDEVLAILQGAIRDRRRVRLRYLV
WSRDEMTVRDVDPMRVLVRDGHWYLEGWCHRASAVRLFRLDRIDGRGGAVVLDVVAQPPPTATPRDTADGVYRPGPDDIP
VRLDLEPQARWVVDYYPVSDVCELPDGGVSVLLRVSELSWLNRLVLGLGAQVRRVEPASVAARVHELADRALAAYAEEPI
G

Sequences:

>Translated_321_residues
MSGSTDRFSRLLALVPWLRAHPGVSLEAAAAEFDVTVRQLRDDLDLLFVCGLPGGAPGDLIDVSYSGDQVTVVDPQTLDR
PLRLSADEATALLVAARALTDVPGLAGREALDQALRKVEDAVGNEPAGHVRVALDTHDEVLAILQGAIRDRRRVRLRYLV
WSRDEMTVRDVDPMRVLVRDGHWYLEGWCHRASAVRLFRLDRIDGRGGAVVLDVVAQPPPTATPRDTADGVYRPGPDDIP
VRLDLEPQARWVVDYYPVSDVCELPDGGVSVLLRVSELSWLNRLVLGLGAQVRRVEPASVAARVHELADRALAAYAEEPI
G
>Mature_320_residues
SGSTDRFSRLLALVPWLRAHPGVSLEAAAAEFDVTVRQLRDDLDLLFVCGLPGGAPGDLIDVSYSGDQVTVVDPQTLDRP
LRLSADEATALLVAARALTDVPGLAGREALDQALRKVEDAVGNEPAGHVRVALDTHDEVLAILQGAIRDRRRVRLRYLVW
SRDEMTVRDVDPMRVLVRDGHWYLEGWCHRASAVRLFRLDRIDGRGGAVVLDVVAQPPPTATPRDTADGVYRPGPDDIPV
RLDLEPQARWVVDYYPVSDVCELPDGGVSVLLRVSELSWLNRLVLGLGAQVRRVEPASVAARVHELADRALAAYAEEPIG

Specific function: Does not seem to be involved in pupylation or substrate degradation [H]

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pafC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35126; Mature: 34995

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGSTDRFSRLLALVPWLRAHPGVSLEAAAAEFDVTVRQLRDDLDLLFVCGLPGGAPGDL
CCCCHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCE
IDVSYSGDQVTVVDPQTLDRPLRLSADEATALLVAARALTDVPGLAGREALDQALRKVED
EEEEECCCEEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
AVGNEPAGHVRVALDTHDEVLAILQGAIRDRRRVRLRYLVWSRDEMTVRDVDPMRVLVRD
HHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHEEEEEEEECCCCCEEECCCCEEEEEEC
GHWYLEGWCHRASAVRLFRLDRIDGRGGAVVLDVVAQPPPTATPRDTADGVYRPGPDDIP
CCEEEHHHHHHHHHEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
VRLDLEPQARWVVDYYPVSDVCELPDGGVSVLLRVSELSWLNRLVLGLGAQVRRVEPASV
EEEECCCCCEEEEEEECCHHHHCCCCCCCEEEEEHHHHHHHHHHHHHCCCHHEECCHHHH
AARVHELADRALAAYAEEPIG
HHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SGSTDRFSRLLALVPWLRAHPGVSLEAAAAEFDVTVRQLRDDLDLLFVCGLPGGAPGDL
CCCHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCE
IDVSYSGDQVTVVDPQTLDRPLRLSADEATALLVAARALTDVPGLAGREALDQALRKVED
EEEEECCCEEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
AVGNEPAGHVRVALDTHDEVLAILQGAIRDRRRVRLRYLVWSRDEMTVRDVDPMRVLVRD
HHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHEEEEEEEECCCCCEEECCCCEEEEEEC
GHWYLEGWCHRASAVRLFRLDRIDGRGGAVVLDVVAQPPPTATPRDTADGVYRPGPDDIP
CCEEEHHHHHHHHHEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
VRLDLEPQARWVVDYYPVSDVCELPDGGVSVLLRVSELSWLNRLVLGLGAQVRRVEPASV
EEEECCCCCEEEEEEECCHHHHCCCCCCCEEEEEHHHHHHHHHHHHHCCCHHEECCHHHH
AARVHELADRALAAYAEEPIG
HHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]