| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316359
Identifier: 158316359
GI number: 158316359
Start: 5472063
End: 5473235
Strand: Reverse
Name: 158316359
Synonym: Franean1_4590
Alternate gene names: NA
Gene position: 5473235-5472063 (Counterclockwise)
Preceding gene: 158316361
Following gene: 158316358
Centisome position: 60.94
GC content: 67.86
Gene sequence:
>1173_bases ATGCCACTCCAGGACTACATGCAGATCATTTCGGTCGACGATCACCTCATCGAACACCCGCGGGTCTTCGCCGACCGGCT CCCGCGCAAGTTCCTGGACGCGGGCCCGCGCATCGTCGAGGACGAGCAGCGCCGGCACGTGTGGCATATGGAGGACCAGG TCTTCCCGTACATCGGGCTGAACGCGGTCGCCGGCAAGACGCCCGAGGAGTTCGGGATGGAGCCGCTGCGCTTCGACGAC ATGATCCCGGGCTGCTACGACCCGGTCGAGCGGGTCAAGGACATGGACCTCGACGGGATCCAGGCCGCCTGCTGCTTCCC GTCGTTCCCCGGCTTCGGTGGCCGGGTGTTCATGCGGGCCAAGGATCCTGAGCTGGGGCTGGCCTGCGTGCGGGCCTGGA ACGACTTCAGCATCGACGAGTGGTCGGCGTCGGCGCCCGAGCGGTTCGTGCCGCTGGCCCTGCTCCCGCTGTGGGACCTC GACCAGGCGGTGGCCGAACTACGCCGGGTCGCGGCCAAGGGTGCCCGTACCGTCTCGTTTCCCGACAGCCCGGTCCCGCT CGGGCTGCCGTCGTTCCACGACGACCACTGGGGTCCGCTGTGGGACGTCCTCGAGGAGACCGGGATCCCGGTGAGTCTGC ATTTCGGCTCGGGCAGCTTCGTACCCGGCTTCAACTTCTCGGCCGCCGCGCTCTCGCCCAACCCGCCCGCGCCCGGCCAG GCGCCCCCCGCGACGTCGTTCGCCCTCTACGCGACCAACCTGATGTGGTCGACCGTGGACCTGCTGTTCTCCGGGCAGCT ACAGAAGCACCCGGGCCTGAAGTTCATGCTCTCCGAGGGCGGCATCGGCTGGCTCCCCTACATCGCCGAGCGGGCCGACT GGGTCTGGGGCCGCCACCGTTACTACCAGCCCATCGACTTCGACACCCGCCCCAGCGAGCTGCTCCGCAAGCACTTCTGG GGCTGCTACATCGACGACCGGTTCGGGCTGACCAACCGGCACGCGATCGGTGTCGACCGGATCTGCGTCGAGATCGACTA CCCCCACTCGGACTCCATGTGGCCGAACAGCCGCAAGGTGATTGCCGAGTCACTCCTCGACGTGCCCGACGACGAGGCCC ACAAGATCGTTGAGCTCAACGCCCGTGACGTCTTCAACTTCCCGCGCTCCTGA
Upstream 100 bases:
>100_bases TCGGGTGGAACGCGGGCTGTATCAGTGGCGCTATCGTGCGATATAGTGCAATAGGTTATATGATCGACAGCACAATCGAG GGGACCTGAAGGGACGCTGG
Downstream 100 bases:
>100_bases GCGGGCCGGTGCGCCTGGGGCGGGCTCGGCCTCCGCGAGCGCATCTCCCACCGGCGCGGCTTCCGCCGGAGCGGCTCCCG TCACGCGGCCGCGGCCTCAG
Product: amidohydrolase 2
Products: NA
Alternate protein names: Amidase; Amidohydrolase Family Protein; Metal-Dependent Hydrolase; Barh Protein; TIM-Barrel Fold Metal-Dependent Hydrolase; Metal-Dependent Amidohydrolase; Amidohydrolase 2 Protein; Hydrolase; Aminocarboxymuconate-Semialdehyde Decarboxylase; Amidohydrolase Family; Minocarboxymuconate-Semialdehyde Decarboxylase.
Number of amino acids: Translated: 390; Mature: 389
Protein sequence:
>390_residues MPLQDYMQIISVDDHLIEHPRVFADRLPRKFLDAGPRIVEDEQRRHVWHMEDQVFPYIGLNAVAGKTPEEFGMEPLRFDD MIPGCYDPVERVKDMDLDGIQAACCFPSFPGFGGRVFMRAKDPELGLACVRAWNDFSIDEWSASAPERFVPLALLPLWDL DQAVAELRRVAAKGARTVSFPDSPVPLGLPSFHDDHWGPLWDVLEETGIPVSLHFGSGSFVPGFNFSAAALSPNPPAPGQ APPATSFALYATNLMWSTVDLLFSGQLQKHPGLKFMLSEGGIGWLPYIAERADWVWGRHRYYQPIDFDTRPSELLRKHFW GCYIDDRFGLTNRHAIGVDRICVEIDYPHSDSMWPNSRKVIAESLLDVPDDEAHKIVELNARDVFNFPRS
Sequences:
>Translated_390_residues MPLQDYMQIISVDDHLIEHPRVFADRLPRKFLDAGPRIVEDEQRRHVWHMEDQVFPYIGLNAVAGKTPEEFGMEPLRFDD MIPGCYDPVERVKDMDLDGIQAACCFPSFPGFGGRVFMRAKDPELGLACVRAWNDFSIDEWSASAPERFVPLALLPLWDL DQAVAELRRVAAKGARTVSFPDSPVPLGLPSFHDDHWGPLWDVLEETGIPVSLHFGSGSFVPGFNFSAAALSPNPPAPGQ APPATSFALYATNLMWSTVDLLFSGQLQKHPGLKFMLSEGGIGWLPYIAERADWVWGRHRYYQPIDFDTRPSELLRKHFW GCYIDDRFGLTNRHAIGVDRICVEIDYPHSDSMWPNSRKVIAESLLDVPDDEAHKIVELNARDVFNFPRS >Mature_389_residues PLQDYMQIISVDDHLIEHPRVFADRLPRKFLDAGPRIVEDEQRRHVWHMEDQVFPYIGLNAVAGKTPEEFGMEPLRFDDM IPGCYDPVERVKDMDLDGIQAACCFPSFPGFGGRVFMRAKDPELGLACVRAWNDFSIDEWSASAPERFVPLALLPLWDLD QAVAELRRVAAKGARTVSFPDSPVPLGLPSFHDDHWGPLWDVLEETGIPVSLHFGSGSFVPGFNFSAAALSPNPPAPGQA PPATSFALYATNLMWSTVDLLFSGQLQKHPGLKFMLSEGGIGWLPYIAERADWVWGRHRYYQPIDFDTRPSELLRKHFWG CYIDDRFGLTNRHAIGVDRICVEIDYPHSDSMWPNSRKVIAESLLDVPDDEAHKIVELNARDVFNFPRS
Specific function: Unknown
COG id: COG2159
COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44131; Mature: 44000
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLQDYMQIISVDDHLIEHPRVFADRLPRKFLDAGPRIVEDEQRRHVWHMEDQVFPYIGL CCHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHCCCCCCCCHHHHCEECCCCCCCCEECC NAVAGKTPEEFGMEPLRFDDMIPGCYDPVERVKDMDLDGIQAACCFPSFPGFGGRVFMRA HHHCCCCHHHHCCCCCCHHCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCEEEEEE KDPELGLACVRAWNDFSIDEWSASAPERFVPLALLPLWDLDQAVAELRRVAAKGARTVSF CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCEEECC PDSPVPLGLPSFHDDHWGPLWDVLEETGIPVSLHFGSGSFVPGFNFSAAALSPNPPAPGQ CCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCC APPATSFALYATNLMWSTVDLLFSGQLQKHPGLKFMLSEGGIGWLPYIAERADWVWGRHR CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC YYQPIDFDTRPSELLRKHFWGCYIDDRFGLTNRHAIGVDRICVEIDYPHSDSMWPNSRKV CCCCCCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHH IAESLLDVPDDEAHKIVELNARDVFNFPRS HHHHHHCCCCCCCCEEEEECCHHCCCCCCC >Mature Secondary Structure PLQDYMQIISVDDHLIEHPRVFADRLPRKFLDAGPRIVEDEQRRHVWHMEDQVFPYIGL CHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHCCCCCCCCHHHHCEECCCCCCCCEECC NAVAGKTPEEFGMEPLRFDDMIPGCYDPVERVKDMDLDGIQAACCFPSFPGFGGRVFMRA HHHCCCCHHHHCCCCCCHHCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCEEEEEE KDPELGLACVRAWNDFSIDEWSASAPERFVPLALLPLWDLDQAVAELRRVAAKGARTVSF CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCEEECC PDSPVPLGLPSFHDDHWGPLWDVLEETGIPVSLHFGSGSFVPGFNFSAAALSPNPPAPGQ CCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCC APPATSFALYATNLMWSTVDLLFSGQLQKHPGLKFMLSEGGIGWLPYIAERADWVWGRHR CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC YYQPIDFDTRPSELLRKHFWGCYIDDRFGLTNRHAIGVDRICVEIDYPHSDSMWPNSRKV CCCCCCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHH IAESLLDVPDDEAHKIVELNARDVFNFPRS HHHHHHCCCCCCCCEEEEECCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA