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The map label for this gene is frc [H]

Identifier: 158316358

GI number: 158316358

Start: 5469308

End: 5470540

Strand: Reverse

Name: frc [H]

Synonym: Franean1_4587

Alternate gene names: 158316358

Gene position: 5470540-5469308 (Counterclockwise)

Preceding gene: 158316359

Following gene: 158316357

Centisome position: 60.91

GC content: 72.67

Gene sequence:

>1233_bases
ATGCAGCTACCGATGCAGGGCATCCGAGTGCTCGAGGTGGCCCAGTTCACCTTCGTCCCGGCGGCGGGTGCGATCCTGGC
GGACTGGGGCGCCGACGTCATCAAGGTCGAGCACGCCGTGCGCGGCGACGGACAGCGCGGGCTCACGAACGTCCTGGGTG
TCGACGCGATCGCGAAGGGCAGCAGCTTCTCGCCGATCGTCGAGGGGCCGAACCGGGGCAAGCGCAGCGTCGGGCTGGCG
CTGGAGAACCCGCAGGCCCGCGAGCTCCTCGACGATCTGATCAGGCAGAGCGACGTCTTCCTGACCAACTTCCTGCCCGA
CGCGCGCGCCAAGCTGCGGATCGAGCTCGACGACGTCCGCAAGGTCAACCCGGAGATCATCTACGTGCGCGGCTCCGGCT
TCGGCACCCGCGGCCCCGAGGCGGGCAAGGGCGGCTACGACATGACCGCCTTCTGGGCCCGTGCGGGCGGCGGCGCGGGA
GCCACCCCGCCCGGCGCCGACCGGCTGGCCCCGATGCCCGCGGGCGGGTTCGGCGACAACATCGGCGGCATGACCATCGC
CGGCGGCGTCGCGGCGGCCCTGTTCGCCCGTGCCACCACGGGGGAGACCTCGGTCGTCGACGTGTCCCTGCTGGGTGTCG
GGGCCTGGGCGACGCAGTTCACCGTCAACCTGGCGCTGATGGCCGGCGGCCCGCCGCCGCGGCCGCCCGCCCCGCGGCAC
GGCTCGGCGCGCAATCCGCTGGTCGGCCCGTACCGCACCGCCGACGACCGGTGGCTGCTGTTCTCGATGCTGCAGCCCGG
TCGCTACTGGGCGGAGTTCTGCGAGGTCGCGGGGCGGCCGGAGCTCGTCTCCGACGAGCGGTTCGACACGGTCGAGAAGC
TGATGGACCGGGCGCCCGTGGCGGCCGAGATCGTCTCGGAGATCATCGGCGGGCGGACCCTCGAGGACTGGCTGGCCAGG
CTCGCGCACATCGAGGGCCAGTGGGCCGTCGTCCAGGACGCCTGGGGCGTGGCCAACGACGTCTCGCTGCGGGCCAACGG
AATGATCACGACGGTCGAGGACGCCGAGGGCGTGCCCAGGGAGCTGGTGGCCAGCCCCGTGCAGTTCGACGAGCAGGCGG
CCGCGTTGCGCCGGGGTCCGCTGTTCGCCGAGCACACCGACGACGTCCTGCGCGATCTCGGGCTCAGCGACGAACGGCTG
ATCGAGCTCAAGCTGGCCGGTGCGATCACCTGA

Upstream 100 bases:

>100_bases
AGATCCCCCGTCGAGCTCTCTCGCCGAGCGACGACAGACCGGACCGATCGACCGCCCGCTTCGCGGGAGCACAGCCGGAA
CCGAGGAGATCCAGAGAACC

Downstream 100 bases:

>100_bases
CGACGGGCGCGACCGCGCTCGGACGAGCGACGGGCTTCGGACGAGGCGGCGCTCGGACGAGCCCAGCACGGAGGAGAGGA
GAGGCTCGATGCGGGTGACT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: Formyl-CoA transferase [H]

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MQLPMQGIRVLEVAQFTFVPAAGAILADWGADVIKVEHAVRGDGQRGLTNVLGVDAIAKGSSFSPIVEGPNRGKRSVGLA
LENPQARELLDDLIRQSDVFLTNFLPDARAKLRIELDDVRKVNPEIIYVRGSGFGTRGPEAGKGGYDMTAFWARAGGGAG
ATPPGADRLAPMPAGGFGDNIGGMTIAGGVAAALFARATTGETSVVDVSLLGVGAWATQFTVNLALMAGGPPPRPPAPRH
GSARNPLVGPYRTADDRWLLFSMLQPGRYWAEFCEVAGRPELVSDERFDTVEKLMDRAPVAAEIVSEIIGGRTLEDWLAR
LAHIEGQWAVVQDAWGVANDVSLRANGMITTVEDAEGVPRELVASPVQFDEQAAALRRGPLFAEHTDDVLRDLGLSDERL
IELKLAGAIT

Sequences:

>Translated_410_residues
MQLPMQGIRVLEVAQFTFVPAAGAILADWGADVIKVEHAVRGDGQRGLTNVLGVDAIAKGSSFSPIVEGPNRGKRSVGLA
LENPQARELLDDLIRQSDVFLTNFLPDARAKLRIELDDVRKVNPEIIYVRGSGFGTRGPEAGKGGYDMTAFWARAGGGAG
ATPPGADRLAPMPAGGFGDNIGGMTIAGGVAAALFARATTGETSVVDVSLLGVGAWATQFTVNLALMAGGPPPRPPAPRH
GSARNPLVGPYRTADDRWLLFSMLQPGRYWAEFCEVAGRPELVSDERFDTVEKLMDRAPVAAEIVSEIIGGRTLEDWLAR
LAHIEGQWAVVQDAWGVANDVSLRANGMITTVEDAEGVPRELVASPVQFDEQAAALRRGPLFAEHTDDVLRDLGLSDERL
IELKLAGAIT
>Mature_410_residues
MQLPMQGIRVLEVAQFTFVPAAGAILADWGADVIKVEHAVRGDGQRGLTNVLGVDAIAKGSSFSPIVEGPNRGKRSVGLA
LENPQARELLDDLIRQSDVFLTNFLPDARAKLRIELDDVRKVNPEIIYVRGSGFGTRGPEAGKGGYDMTAFWARAGGGAG
ATPPGADRLAPMPAGGFGDNIGGMTIAGGVAAALFARATTGETSVVDVSLLGVGAWATQFTVNLALMAGGPPPRPPAPRH
GSARNPLVGPYRTADDRWLLFSMLQPGRYWAEFCEVAGRPELVSDERFDTVEKLMDRAPVAAEIVSEIIGGRTLEDWLAR
LAHIEGQWAVVQDAWGVANDVSLRANGMITTVEDAEGVPRELVASPVQFDEQAAALRRGPLFAEHTDDVLRDLGLSDERL
IELKLAGAIT

Specific function: Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate [H]

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=408, Percent_Identity=26.4705882352941, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI266456254, Length=408, Percent_Identity=26.4705882352941, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI300863128, Length=410, Percent_Identity=24.1463414634146, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI300863124, Length=436, Percent_Identity=23.1651376146789, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI266458393, Length=272, Percent_Identity=29.4117647058824, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI266458397, Length=272, Percent_Identity=29.4117647058824, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI300863126, Length=147, Percent_Identity=29.9319727891156, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI266458395, Length=155, Percent_Identity=31.6129032258064, Blast_Score=66, Evalue=6e-11,
Organism=Escherichia coli, GI1788717, Length=432, Percent_Identity=27.5462962962963, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI87082093, Length=330, Percent_Identity=25.1515151515152, Blast_Score=104, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI32564160, Length=288, Percent_Identity=25.3472222222222, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24648431, Length=411, Percent_Identity=27.007299270073, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24585488, Length=215, Percent_Identity=28.8372093023256, Blast_Score=85, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673
- InterPro:   IPR017659 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: =2.8.3.16 [H]

Molecular weight: Translated: 43602; Mature: 43602

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLPMQGIRVLEVAQFTFVPAAGAILADWGADVIKVEHAVRGDGQRGLTNVLGVDAIAKG
CCCCHHHHHHHHHHHHEECCCCCHHHHHCCCCCEEEHHHHCCCCCCCHHHHHHHHHHCCC
SSFSPIVEGPNRGKRSVGLALENPQARELLDDLIRQSDVFLTNFLPDARAKLRIELDDVR
CCCCCCCCCCCCCCCEECEEECCCHHHHHHHHHHHHCCEEEECCCCCCCEEEEEEEHHHH
KVNPEIIYVRGSGFGTRGPEAGKGGYDMTAFWARAGGGAGATPPGADRLAPMPAGGFGDN
CCCCCEEEEECCCCCCCCCCCCCCCCCHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCC
IGGMTIAGGVAAALFARATTGETSVVDVSLLGVGAWATQFTVNLALMAGGPPPRPPAPRH
CCCEEEHHHHHHHHHHHCCCCCCEEEEEEEEECCHHHEEEEEEEEEEECCCCCCCCCCCC
GSARNPLVGPYRTADDRWLLFSMLQPGRYWAEFCEVAGRPELVSDERFDTVEKLMDRAPV
CCCCCCCCCCCCCCCCCEEEEEHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCH
AAEIVSEIIGGRTLEDWLARLAHIEGQWAVVQDAWGVANDVSLRANGMITTVEDAEGVPR
HHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCEEEECCCCCCCH
ELVASPVQFDEQAAALRRGPLFAEHTDDVLRDLGLSDERLIELKLAGAIT
HHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCC
>Mature Secondary Structure
MQLPMQGIRVLEVAQFTFVPAAGAILADWGADVIKVEHAVRGDGQRGLTNVLGVDAIAKG
CCCCHHHHHHHHHHHHEECCCCCHHHHHCCCCCEEEHHHHCCCCCCCHHHHHHHHHHCCC
SSFSPIVEGPNRGKRSVGLALENPQARELLDDLIRQSDVFLTNFLPDARAKLRIELDDVR
CCCCCCCCCCCCCCCEECEEECCCHHHHHHHHHHHHCCEEEECCCCCCCEEEEEEEHHHH
KVNPEIIYVRGSGFGTRGPEAGKGGYDMTAFWARAGGGAGATPPGADRLAPMPAGGFGDN
CCCCCEEEEECCCCCCCCCCCCCCCCCHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCC
IGGMTIAGGVAAALFARATTGETSVVDVSLLGVGAWATQFTVNLALMAGGPPPRPPAPRH
CCCEEEHHHHHHHHHHHCCCCCCEEEEEEEEECCHHHEEEEEEEEEEECCCCCCCCCCCC
GSARNPLVGPYRTADDRWLLFSMLQPGRYWAEFCEVAGRPELVSDERFDTVEKLMDRAPV
CCCCCCCCCCCCCCCCCEEEEEHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCH
AAEIVSEIIGGRTLEDWLARLAHIEGQWAVVQDAWGVANDVSLRANGMITTVEDAEGVPR
HHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCEEEECCCCCCCH
ELVASPVQFDEQAAALRRGPLFAEHTDDVLRDLGLSDERLIELKLAGAIT
HHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]