BacMap

Definition	Frankia sp. EAN1pec chromosome, complete genome.
Accession	NC_009921
Length	8,982,042

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The map label for this gene is yqjQ [H]

Identifier: 158316312

GI number: 158316312

Start: 5415888

End: 5416718

Strand: Reverse

Name: yqjQ [H]

Synonym: Franean1_4539

Alternate gene names: 158316312

Gene position: 5416718-5415888 (Counterclockwise)

Preceding gene: 158316313

Following gene: 158316311

Centisome position: 60.31

GC content: 72.32

Gene sequence:

>831_bases
ATGCAGACCTGGTTGATCACCGGCTGTTCCACGGGCCTGGGCCGCGCGCTCGCGCAGGCCCTGCTCGATCATGGCCACAA
CGTGGCCGCCACAGCCCGGGACGTCGCCCACGTGGCCGACCTCGCCGAGGCGTACCCCGGCCGCGCGCTCGCGCTCGCGC
TCGACGTCACCGATGGTGCGCAGGTCACGCGCGCCGTCCAGCAGGCCGAACAGCGGTTCGGTGGTGTCGACGTGCTCGTC
AACAACGCCGGCTACGGGTATCGGGCGGCGGTCGAGGAGGGCGACGAGGACGACGTCCGCCGGCTGTTCGCCACCAATTT
CTTCGGCGCGGTGTCGATGGCCAAAGGTGTGCTCCCGGGCATGCGCGCGCGACGGCGTGGCGCGATCGTCAACATCTCGT
CGATCGGCGCGCGCATCTGCCCGCCGGGATCGGGCTACTACTCGGCGACCAAGGCGGCGCTCGAGGGCCTGACGGGCTCG
CTGCGCAGAGAGCTCGGGCCGCTCGGCATCCACGCGATCGTCGTCGAGCCCGGTGCCTTCCGGACCGACTTCGCGGGCCG
CTCTCTCCAGCAGGCCGCGACGCCGATCGCCGACTACGTTGACACGGCCGGGCGTCGCCGCAAGGAGCACGACATGACGC
ACGGCACCGAGCCGGGCGACCCGGCGAAGGCCGCCGAGGCGATCATCGCCGCCGTCGAGTCGGCGTCGCCCCCCGCGCTG
CTCGTGCTCGGCCAGGACGCCGTGCGGCTCTTCCGTGACACGCTGGAGGGCCAGCTCGCTGAGCTGACGGAGTGGGAGAA
GACCAGCCTCGCCACCGCCGTCGACGCCTAG

Upstream 100 bases:

>100_bases
GGAGAGCTACACGCCGCGCAGGCCGACCTACTACGGCTCCGAGTCGGGGTACTGAGCCTGTGACCAGATTCCGTCCTCGA
CGCACAAGGAGCTGATGCCG

Downstream 100 bases:

>100_bases
GCCGTACCGCCGCCCATCCGGACCGACGGATATCCGTCCAGGTCACGAGGGCTTCGTCATCGTCATCAGCACGCAGACGC
CACTGACCCGACCGGGGCTA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MQTWLITGCSTGLGRALAQALLDHGHNVAATARDVAHVADLAEAYPGRALALALDVTDGAQVTRAVQQAEQRFGGVDVLV
NNAGYGYRAAVEEGDEDDVRRLFATNFFGAVSMAKGVLPGMRARRRGAIVNISSIGARICPPGSGYYSATKAALEGLTGS
LRRELGPLGIHAIVVEPGAFRTDFAGRSLQQAATPIADYVDTAGRRRKEHDMTHGTEPGDPAKAAEAIIAAVESASPPAL
LVLGQDAVRLFRDTLEGQLAELTEWEKTSLATAVDA

Sequences:

>Translated_276_residues
MQTWLITGCSTGLGRALAQALLDHGHNVAATARDVAHVADLAEAYPGRALALALDVTDGAQVTRAVQQAEQRFGGVDVLV
NNAGYGYRAAVEEGDEDDVRRLFATNFFGAVSMAKGVLPGMRARRRGAIVNISSIGARICPPGSGYYSATKAALEGLTGS
LRRELGPLGIHAIVVEPGAFRTDFAGRSLQQAATPIADYVDTAGRRRKEHDMTHGTEPGDPAKAAEAIIAAVESASPPAL
LVLGQDAVRLFRDTLEGQLAELTEWEKTSLATAVDA
>Mature_276_residues
MQTWLITGCSTGLGRALAQALLDHGHNVAATARDVAHVADLAEAYPGRALALALDVTDGAQVTRAVQQAEQRFGGVDVLV
NNAGYGYRAAVEEGDEDDVRRLFATNFFGAVSMAKGVLPGMRARRRGAIVNISSIGARICPPGSGYYSATKAALEGLTGS
LRRELGPLGIHAIVVEPGAFRTDFAGRSLQQAATPIADYVDTAGRRRKEHDMTHGTEPGDPAKAAEAIIAAVESASPPAL
LVLGQDAVRLFRDTLEGQLAELTEWEKTSLATAVDA

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=254, Percent_Identity=35.8267716535433, Blast_Score=112, Evalue=4e-25,
Organism=Homo sapiens, GI20149619, Length=190, Percent_Identity=31.5789473684211, Blast_Score=104, Evalue=8e-23,
Organism=Homo sapiens, GI223718074, Length=247, Percent_Identity=33.1983805668016, Blast_Score=101, Evalue=7e-22,
Organism=Homo sapiens, GI40548397, Length=184, Percent_Identity=33.695652173913, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI214010158, Length=184, Percent_Identity=33.695652173913, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI214010156, Length=184, Percent_Identity=33.695652173913, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI22758144, Length=184, Percent_Identity=33.695652173913, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI7706318, Length=200, Percent_Identity=35, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI22507405, Length=186, Percent_Identity=34.4086021505376, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI119392083, Length=184, Percent_Identity=32.6086956521739, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI109715829, Length=203, Percent_Identity=30.5418719211823, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI44680136, Length=187, Percent_Identity=33.6898395721925, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI44680133, Length=187, Percent_Identity=33.6898395721925, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI17738292, Length=187, Percent_Identity=33.6898395721925, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI150247226, Length=181, Percent_Identity=34.2541436464088, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI50726952, Length=181, Percent_Identity=34.2541436464088, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI4503817, Length=181, Percent_Identity=29.2817679558011, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI19743808, Length=181, Percent_Identity=33.7016574585635, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI40254992, Length=179, Percent_Identity=30.7262569832402, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI32483357, Length=185, Percent_Identity=30.2702702702703, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI4504503, Length=189, Percent_Identity=31.2169312169312, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI32455239, Length=167, Percent_Identity=31.7365269461078, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI5031765, Length=167, Percent_Identity=31.7365269461078, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI157739938, Length=230, Percent_Identity=23.9130434782609, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI226371731, Length=172, Percent_Identity=29.6511627906977, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI5031737, Length=185, Percent_Identity=30.8108108108108, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI33667109, Length=185, Percent_Identity=30.8108108108108, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI4758504, Length=244, Percent_Identity=28.6885245901639, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI19923817, Length=197, Percent_Identity=26.9035532994924, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI7705925, Length=181, Percent_Identity=32.5966850828729, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI59889578, Length=167, Percent_Identity=29.940119760479, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI66933014, Length=226, Percent_Identity=28.3185840707965, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI210032110, Length=175, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI87082100, Length=197, Percent_Identity=35.0253807106599, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1787335, Length=180, Percent_Identity=32.7777777777778, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1786701, Length=203, Percent_Identity=32.0197044334975, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787820, Length=180, Percent_Identity=30.5555555555556, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI2367175, Length=193, Percent_Identity=32.1243523316062, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786812, Length=181, Percent_Identity=34.2541436464088, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87082160, Length=203, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790717, Length=183, Percent_Identity=28.9617486338798, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI2367365, Length=187, Percent_Identity=34.7593582887701, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788459, Length=193, Percent_Identity=30.0518134715026, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17507613, Length=271, Percent_Identity=28.4132841328413, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI32563809, Length=271, Percent_Identity=28.4132841328413, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71997402, Length=192, Percent_Identity=32.2916666666667, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17560332, Length=199, Percent_Identity=33.1658291457286, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17557780, Length=201, Percent_Identity=30.3482587064677, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17570069, Length=192, Percent_Identity=32.8125, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17538486, Length=200, Percent_Identity=32, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=235, Percent_Identity=28.5106382978723, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=241, Percent_Identity=29.045643153527, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17565030, Length=197, Percent_Identity=31.4720812182741, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI72000259, Length=195, Percent_Identity=30.2564102564103, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17562910, Length=201, Percent_Identity=31.3432835820896, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI115534660, Length=202, Percent_Identity=27.7227722772277, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=192, Percent_Identity=31.7708333333333, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17559552, Length=211, Percent_Identity=27.4881516587678, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17557668, Length=206, Percent_Identity=26.6990291262136, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17561402, Length=189, Percent_Identity=29.1005291005291, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17508895, Length=164, Percent_Identity=29.8780487804878, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=194, Percent_Identity=29.3814432989691, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=237, Percent_Identity=25.7383966244726, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=198, Percent_Identity=31.3131313131313, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71982365, Length=142, Percent_Identity=31.6901408450704, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=192, Percent_Identity=29.6875, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=193, Percent_Identity=32.6424870466321, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=194, Percent_Identity=29.3814432989691, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17562908, Length=192, Percent_Identity=29.6875, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=192, Percent_Identity=29.6875, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI115534694, Length=184, Percent_Identity=32.0652173913043, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=31.6062176165803, Blast_Score=97, Evalue=3e-21,
Organism=Saccharomyces cerevisiae, GI6322226, Length=185, Percent_Identity=31.8918918918919, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6322227, Length=190, Percent_Identity=30, Blast_Score=67, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6322067, Length=238, Percent_Identity=25.2100840336134, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6323458, Length=230, Percent_Identity=27.3913043478261, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI21358495, Length=194, Percent_Identity=32.4742268041237, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI23397609, Length=185, Percent_Identity=34.5945945945946, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24643142, Length=180, Percent_Identity=36.1111111111111, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24641232, Length=211, Percent_Identity=30.3317535545024, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI116007236, Length=216, Percent_Identity=30.0925925925926, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24640442, Length=195, Percent_Identity=28.7179487179487, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI17737361, Length=191, Percent_Identity=30.3664921465969, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI28571526, Length=232, Percent_Identity=28.0172413793103, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24580925, Length=204, Percent_Identity=31.8627450980392, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24649181, Length=186, Percent_Identity=30.1075268817204, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21356301, Length=181, Percent_Identity=30.939226519337, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21355631, Length=166, Percent_Identity=29.5180722891566, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24584752, Length=192, Percent_Identity=28.125, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI116007238, Length=182, Percent_Identity=31.3186813186813, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28574402, Length=197, Percent_Identity=27.4111675126904, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24648944, Length=189, Percent_Identity=31.7460317460317, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24584744, Length=182, Percent_Identity=28.021978021978, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24644339, Length=233, Percent_Identity=27.4678111587983, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21357041, Length=234, Percent_Identity=29.0598290598291, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24639444, Length=188, Percent_Identity=30.8510638297872, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI21355319, Length=188, Percent_Identity=30.3191489361702, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI116007234, Length=182, Percent_Identity=30.7692307692308, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI116007232, Length=182, Percent_Identity=30.7692307692308, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28973; Mature: 28973

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: PS00061 ADH_SHORT ; PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTWLITGCSTGLGRALAQALLDHGHNVAATARDVAHVADLAEAYPGRALALALDVTDGA
CCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCH
QVTRAVQQAEQRFGGVDVLVNNAGYGYRAAVEEGDEDDVRRLFATNFFGAVSMAKGVLPG
HHHHHHHHHHHHHCCEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
MRARRRGAIVNISSIGARICPPGSGYYSATKAALEGLTGSLRRELGPLGIHAIVVEPGAF
HHHHHCCCEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
RTDFAGRSLQQAATPIADYVDTAGRRRKEHDMTHGTEPGDPAKAAEAIIAAVESASPPAL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEE
LVLGQDAVRLFRDTLEGQLAELTEWEKTSLATAVDA
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQTWLITGCSTGLGRALAQALLDHGHNVAATARDVAHVADLAEAYPGRALALALDVTDGA
CCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCH
QVTRAVQQAEQRFGGVDVLVNNAGYGYRAAVEEGDEDDVRRLFATNFFGAVSMAKGVLPG
HHHHHHHHHHHHHCCEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
MRARRRGAIVNISSIGARICPPGSGYYSATKAALEGLTGSLRRELGPLGIHAIVVEPGAF
HHHHHCCCEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
RTDFAGRSLQQAATPIADYVDTAGRRRKEHDMTHGTEPGDPAKAAEAIIAAVESASPPAL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEE
LVLGQDAVRLFRDTLEGQLAELTEWEKTSLATAVDA
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]