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The map label for this gene is yfdE [H]

Identifier: 158316270

GI number: 158316270

Start: 5361297

End: 5362505

Strand: Reverse

Name: yfdE [H]

Synonym: Franean1_4495

Alternate gene names: 158316270

Gene position: 5362505-5361297 (Counterclockwise)

Preceding gene: 158316271

Following gene: 158316269

Centisome position: 59.7

GC content: 70.39

Gene sequence:

>1209_bases
GTGACCGCCGTGCCGCCCACCGACGCAGCCGCCCCGCCGTACCGGGGCCTGCGTGTCGTCGAGGTCGCCGCCGACGTGGC
GGGGGAGTTCTGCACCCGGCTCCTGGGCCAGATGGGTGCCGAGGTCATCAAGGTGGAGCCGCCGGGTGGCAGCCCGTCGC
GGCATGCCGGCCCGTTCGTCGAGGGCCACTCCGACGGCGAGCACAGCCTGGGCTTCTGGCACTACAACGTCGGCAAACGC
AGTGCCGTGCTCGACCTCGCCGAGGCCGCCGGGCTCGCCGGCCTGCGTGACCTGCTGCGGGACGCCGACGTGTTCGTCTT
CTCGGGCACCCCGCGGGCGTTCCGTGCCCTGGGCCTCGACCGCGAGGCTCTGGCGGAGGTGAACCCCGGACTGGTCACGC
TCGTCATCACGCCCTTCGGTCTCACCGGCCCGTGGGCCGAGTACCAGGCGAGCGATCTGATCTCCTTCGCGGCCAGCGGT
GTGCTGGCCTGCTGCGGGTACGACGATCACACGATCCCGCCGATCCGTCCCAGCGGGAACCACGCCCACCAGACAAGCGC
GACCTTCGGGCACACCGCGCTCCTGCTCGCCCTGGTGCGGCGGCAGTCCACCGGGCGGGGCGACCTGATCGACCTCGCCA
CGCACGACACCATGGCGATCACGGTCGAGATGGCGAACACGTACTGGATCTACACCGGCGCGATCCTGCGACGGCAGACG
GCCCGGCACGCCCAGCCCGTCCCGACCGCGCAGACCCTCTTCGAGTGCGCTGACGGCCGATACGTCGTCATCGTCTTCAT
CGTCGCCGAGCAGAAGCCGTGGTCGATCTTCGTAGAGTGGCTCGCGAGCCATGACCTCGCCCTCGACCTGAGCGAAGAGC
GCTACCTCGACCCGAGGGTTCGGCAGCAGGAGTTCGGCCATATCCAGGAGGTCCTGGAGATCTTCTTCCTGACCCTCGAC
GCCGACACGGCGTTCCGGGAGGGACAGGAGCGTGGTCTGCCCATCGGCACGGTGTTCGCCCCGGAGGAGATCCTCGATCT
CGAGCAGCTCCGGGAGCGGCAGTACTTCGACACCATCGAGGTGGACGGGGTGGCGAACGTGGTCGTGCCGGGCCCCCCGT
ACCGGCTCTCCGGTGTCGCGGGGCAGGCGCTGTCCCCGCCGCCTCGCCTCGCCGAGTACCAGGCTGATCTCGTGCCCGGC
CAGGTCTGA

Upstream 100 bases:

>100_bases
GGTCGGCTCCGCTGCTGGCCGAGGACAACGAGTACGTCTTCTCGGAGATCGTCGGGATGTCCCGCGCCGAGATCGACGTG
CTGACGGACGAGGGTGTGCT

Downstream 100 bases:

>100_bases
ACCTGACCGCGCGGCCGGCCCGGCCGGCCCGGCCGGCCGCGTCGCGCCGGCCCGTCCCGTCCCGAGGGAGTGCAATGGCA
ACGATCTACAAAACAGTCGA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MTAVPPTDAAAPPYRGLRVVEVAADVAGEFCTRLLGQMGAEVIKVEPPGGSPSRHAGPFVEGHSDGEHSLGFWHYNVGKR
SAVLDLAEAAGLAGLRDLLRDADVFVFSGTPRAFRALGLDREALAEVNPGLVTLVITPFGLTGPWAEYQASDLISFAASG
VLACCGYDDHTIPPIRPSGNHAHQTSATFGHTALLLALVRRQSTGRGDLIDLATHDTMAITVEMANTYWIYTGAILRRQT
ARHAQPVPTAQTLFECADGRYVVIVFIVAEQKPWSIFVEWLASHDLALDLSEERYLDPRVRQQEFGHIQEVLEIFFLTLD
ADTAFREGQERGLPIGTVFAPEEILDLEQLRERQYFDTIEVDGVANVVVPGPPYRLSGVAGQALSPPPRLAEYQADLVPG
QV

Sequences:

>Translated_402_residues
MTAVPPTDAAAPPYRGLRVVEVAADVAGEFCTRLLGQMGAEVIKVEPPGGSPSRHAGPFVEGHSDGEHSLGFWHYNVGKR
SAVLDLAEAAGLAGLRDLLRDADVFVFSGTPRAFRALGLDREALAEVNPGLVTLVITPFGLTGPWAEYQASDLISFAASG
VLACCGYDDHTIPPIRPSGNHAHQTSATFGHTALLLALVRRQSTGRGDLIDLATHDTMAITVEMANTYWIYTGAILRRQT
ARHAQPVPTAQTLFECADGRYVVIVFIVAEQKPWSIFVEWLASHDLALDLSEERYLDPRVRQQEFGHIQEVLEIFFLTLD
ADTAFREGQERGLPIGTVFAPEEILDLEQLRERQYFDTIEVDGVANVVVPGPPYRLSGVAGQALSPPPRLAEYQADLVPG
QV
>Mature_401_residues
TAVPPTDAAAPPYRGLRVVEVAADVAGEFCTRLLGQMGAEVIKVEPPGGSPSRHAGPFVEGHSDGEHSLGFWHYNVGKRS
AVLDLAEAAGLAGLRDLLRDADVFVFSGTPRAFRALGLDREALAEVNPGLVTLVITPFGLTGPWAEYQASDLISFAASGV
LACCGYDDHTIPPIRPSGNHAHQTSATFGHTALLLALVRRQSTGRGDLIDLATHDTMAITVEMANTYWIYTGAILRRQTA
RHAQPVPTAQTLFECADGRYVVIVFIVAEQKPWSIFVEWLASHDLALDLSEERYLDPRVRQQEFGHIQEVLEIFFLTLDA
DTAFREGQERGLPIGTVFAPEEILDLEQLRERQYFDTIEVDGVANVVVPGPPYRLSGVAGQALSPPPRLAEYQADLVPGQ
V

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=401, Percent_Identity=26.1845386533666, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI300863124, Length=427, Percent_Identity=25.5269320843091, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI300863126, Length=156, Percent_Identity=33.974358974359, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI266456254, Length=198, Percent_Identity=29.2929292929293, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI42794625, Length=198, Percent_Identity=29.2929292929293, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI266458393, Length=198, Percent_Identity=29.2929292929293, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI266458397, Length=198, Percent_Identity=29.2929292929293, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI87082093, Length=381, Percent_Identity=29.3963254593176, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1788717, Length=210, Percent_Identity=29.5238095238095, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786222, Length=260, Percent_Identity=26.5384615384615, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24648431, Length=396, Percent_Identity=26.2626262626263, Blast_Score=110, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43685; Mature: 43554

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAVPPTDAAAPPYRGLRVVEVAADVAGEFCTRLLGQMGAEVIKVEPPGGSPSRHAGPFV
CCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
EGHSDGEHSLGFWHYNVGKRSAVLDLAEAAGLAGLRDLLRDADVFVFSGTPRAFRALGLD
CCCCCCCCCEEEEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCEEEECCCCHHHHHHCCC
REALAEVNPGLVTLVITPFGLTGPWAEYQASDLISFAASGVLACCGYDDHTIPPIRPSGN
HHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCC
HAHQTSATFGHTALLLALVRRQSTGRGDLIDLATHDTMAITVEMANTYWIYTGAILRRQT
CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEEEECCEEEEEEHHHHHHHH
ARHAQPVPTAQTLFECADGRYVVIVFIVAEQKPWSIFVEWLASHDLALDLSEERYLDPRV
HHCCCCCCHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHCCCEEEECCHHHCCCCHH
RQQEFGHIQEVLEIFFLTLDADTAFREGQERGLPIGTVFAPEEILDLEQLRERQYFDTIE
HHHHHHHHHHHHHHHHEEECCCHHHHCHHHCCCEEEEEECCHHHHHHHHHHHHHHCCEEE
VDGVANVVVPGPPYRLSGVAGQALSPPPRLAEYQADLVPGQV
ECCCEEEEECCCCCEECCCCCCCCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure 
TAVPPTDAAAPPYRGLRVVEVAADVAGEFCTRLLGQMGAEVIKVEPPGGSPSRHAGPFV
CCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
EGHSDGEHSLGFWHYNVGKRSAVLDLAEAAGLAGLRDLLRDADVFVFSGTPRAFRALGLD
CCCCCCCCCEEEEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCEEEECCCCHHHHHHCCC
REALAEVNPGLVTLVITPFGLTGPWAEYQASDLISFAASGVLACCGYDDHTIPPIRPSGN
HHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCC
HAHQTSATFGHTALLLALVRRQSTGRGDLIDLATHDTMAITVEMANTYWIYTGAILRRQT
CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEEEECCEEEEEEHHHHHHHH
ARHAQPVPTAQTLFECADGRYVVIVFIVAEQKPWSIFVEWLASHDLALDLSEERYLDPRV
HHCCCCCCHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHCCCEEEECCHHHCCCCHH
RQQEFGHIQEVLEIFFLTLDADTAFREGQERGLPIGTVFAPEEILDLEQLRERQYFDTIE
HHHHHHHHHHHHHHHHEEECCCHHHHCHHHCCCEEEEEECCHHHHHHHHHHHHHHCCEEE
VDGVANVVVPGPPYRLSGVAGQALSPPPRLAEYQADLVPGQV
ECCCEEEEECCCCCEECCCCCCCCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]