The gene/protein map for NC_009921 is currently unavailable.
Definition Frankia sp. EAN1pec chromosome, complete genome.
Accession NC_009921
Length 8,982,042

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The map label for this gene is limC [H]

Identifier: 158316251

GI number: 158316251

Start: 5340390

End: 5341211

Strand: Reverse

Name: limC [H]

Synonym: Franean1_4476

Alternate gene names: 158316251

Gene position: 5341211-5340390 (Counterclockwise)

Preceding gene: 158316253

Following gene: 158316250

Centisome position: 59.47

GC content: 65.33

Gene sequence:

>822_bases
GTGGCCAAAGTTCAGGGCAAGGTGGCATTCGTGACGGGCGCCGGGCGGGGGCTTGGAAGGAGCTTCGCTGCCCGGCTGGC
CGAGGAGGGCGCGGACATCATCGCGACGGACGTCTGTTCACCTGTGTCGTCGGCGCCGTACGGAATGGCGAGTTCGTCGG
ATCTTGACCAGACCGTGGCGGAGGTCCGGGCGCTTGGCCGACACGCGGTCGCGTTCGAGTCCGACGTCCGGGACGGGGAG
TCGATTCAGGCGGGGCTGGCCAAGGCGGTCGTCGAACTCGGCCGCCTCGACATCGTGTGCGCGAACGCAGGTTTCATCTC
CTACGGTGCCGCGGTCGATCTCGCCGAGACCGAGTGGAACGAGATGATCGATGTCCATGTGACTGGCGCCTGGAACACCT
GCAAGGCTGCCGTGCCCTATCTGATTCGGTCCGGTGTGGGAGCATCCATAGTCTTCACCAGCTCCATGGCGGGTCTTCGT
GCCCGCCCGGGCATCGGCCATTATGTCACGGCCAAACACGCGGTTGTCGGCCTGATGCGCACCTTCGCGATCGAACTGGC
GCCGTTCGGCGTCCGGGTCAATTCAGTGCATCCGACGTCGACGAACACGCAGATGATTCAGAACAGCGCGACCCGTCAGG
TGGCCGACGGAGACGGAGCGGACGGTTCGGTCGAGGAGCGCAGGAAGTCCGGCAGGCTCCTCGATGTGCCGTGGATCGAG
GCGATCGACGTGGCGAACGCTGTCCTCTTCCTCAGCTCGGAGGATGCCCGCTACATCACCGGGGTGACGTTGCCCATCGA
CGCGGGTGCCATGTTGGTCTGA

Upstream 100 bases:

>100_bases
TCCTCCCTTCTTCGGGCGGCGGGTAGCGAATGCGTCGTTGTCCGACCAGGCGATTTTCCGCTGCTGGTTGTTCGCGTCCA
GGGAAAAGGATTGGCTAGCC

Downstream 100 bases:

>100_bases
CGCTATCGACGATGCACACATCTACCGACTATCCAGGGCTGGAGCTGCATGACGACCGACGGGCAACTGTCAGGAAAAGT
CGCGCTCATCACCGGAGCCG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: (4R,6S)-carveol dehydrogenase; CDH; Carveol dehydrogenase [H]

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MAKVQGKVAFVTGAGRGLGRSFAARLAEEGADIIATDVCSPVSSAPYGMASSSDLDQTVAEVRALGRHAVAFESDVRDGE
SIQAGLAKAVVELGRLDIVCANAGFISYGAAVDLAETEWNEMIDVHVTGAWNTCKAAVPYLIRSGVGASIVFTSSMAGLR
ARPGIGHYVTAKHAVVGLMRTFAIELAPFGVRVNSVHPTSTNTQMIQNSATRQVADGDGADGSVEERRKSGRLLDVPWIE
AIDVANAVLFLSSEDARYITGVTLPIDAGAMLV

Sequences:

>Translated_273_residues
MAKVQGKVAFVTGAGRGLGRSFAARLAEEGADIIATDVCSPVSSAPYGMASSSDLDQTVAEVRALGRHAVAFESDVRDGE
SIQAGLAKAVVELGRLDIVCANAGFISYGAAVDLAETEWNEMIDVHVTGAWNTCKAAVPYLIRSGVGASIVFTSSMAGLR
ARPGIGHYVTAKHAVVGLMRTFAIELAPFGVRVNSVHPTSTNTQMIQNSATRQVADGDGADGSVEERRKSGRLLDVPWIE
AIDVANAVLFLSSEDARYITGVTLPIDAGAMLV
>Mature_272_residues
AKVQGKVAFVTGAGRGLGRSFAARLAEEGADIIATDVCSPVSSAPYGMASSSDLDQTVAEVRALGRHAVAFESDVRDGES
IQAGLAKAVVELGRLDIVCANAGFISYGAAVDLAETEWNEMIDVHVTGAWNTCKAAVPYLIRSGVGASIVFTSSMAGLRA
RPGIGHYVTAKHAVVGLMRTFAIELAPFGVRVNSVHPTSTNTQMIQNSATRQVADGDGADGSVEERRKSGRLLDVPWIEA
IDVANAVLFLSSEDARYITGVTLPIDAGAMLV

Specific function: Catalyzes the oxidation of carveol to carvone, with a strong stereoselectivity since it efficiently converts only the (6S)-stereoisomers, of which (-)-(4R,6S)-trans-carveol is the better substrate. Displays a broad substrate specificity with a preference

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=264, Percent_Identity=33.7121212121212, Blast_Score=115, Evalue=6e-26,
Organism=Homo sapiens, GI15277342, Length=284, Percent_Identity=30.9859154929577, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI126723750, Length=271, Percent_Identity=29.520295202952, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI4504505, Length=205, Percent_Identity=30.2439024390244, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI126723191, Length=195, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI31542939, Length=259, Percent_Identity=28.1853281853282, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI40254992, Length=271, Percent_Identity=29.1512915129151, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI5031737, Length=262, Percent_Identity=26.3358778625954, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI66933014, Length=270, Percent_Identity=26.2962962962963, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI10190704, Length=275, Percent_Identity=26.5454545454545, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI142976729, Length=211, Percent_Identity=27.4881516587678, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI210032110, Length=212, Percent_Identity=26.8867924528302, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI40254986, Length=205, Percent_Identity=30.2439024390244, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI7705925, Length=264, Percent_Identity=27.6515151515151, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=28.3505154639175, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI302344755, Length=105, Percent_Identity=38.0952380952381, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI19923817, Length=272, Percent_Identity=23.1617647058824, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI224922801, Length=182, Percent_Identity=29.1208791208791, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI4758504, Length=214, Percent_Identity=26.1682242990654, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI223718074, Length=207, Percent_Identity=28.9855072463768, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI7706318, Length=227, Percent_Identity=22.4669603524229, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI87082100, Length=275, Percent_Identity=30.9090909090909, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1789208, Length=269, Percent_Identity=28.6245353159851, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1787335, Length=272, Percent_Identity=31.25, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1788459, Length=269, Percent_Identity=28.996282527881, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1786812, Length=274, Percent_Identity=29.5620437956204, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI87082160, Length=275, Percent_Identity=26.1818181818182, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1790717, Length=268, Percent_Identity=26.4925373134328, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789378, Length=264, Percent_Identity=25.7575757575758, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787905, Length=267, Percent_Identity=25.0936329588015, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788891, Length=204, Percent_Identity=31.8627450980392, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI2367175, Length=269, Percent_Identity=27.1375464684015, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789057, Length=267, Percent_Identity=24.3445692883895, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787526, Length=269, Percent_Identity=27.5092936802974, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17568967, Length=211, Percent_Identity=36.9668246445498, Blast_Score=119, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17561402, Length=273, Percent_Identity=27.8388278388278, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17560676, Length=264, Percent_Identity=28.7878787878788, Blast_Score=95, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI25147288, Length=265, Percent_Identity=27.9245283018868, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=264, Percent_Identity=29.1666666666667, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17555706, Length=270, Percent_Identity=28.1481481481481, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI71994600, Length=270, Percent_Identity=27.037037037037, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17562906, Length=284, Percent_Identity=27.8169014084507, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562908, Length=288, Percent_Identity=27.7777777777778, Blast_Score=81, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17531453, Length=287, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI115534694, Length=266, Percent_Identity=28.1954887218045, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=204, Percent_Identity=28.4313725490196, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193203117, Length=216, Percent_Identity=28.2407407407407, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71982365, Length=256, Percent_Identity=28.515625, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562910, Length=288, Percent_Identity=27.4305555555556, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193203115, Length=213, Percent_Identity=28.169014084507, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17544670, Length=297, Percent_Identity=26.9360269360269, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17558628, Length=262, Percent_Identity=27.8625954198473, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17567345, Length=212, Percent_Identity=26.8867924528302, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=288, Percent_Identity=25.6944444444444, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=298, Percent_Identity=28.1879194630872, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=285, Percent_Identity=28.0701754385965, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=213, Percent_Identity=26.2910798122066, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=289, Percent_Identity=26.9896193771626, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17560150, Length=279, Percent_Identity=25.089605734767, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17536025, Length=270, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17560220, Length=284, Percent_Identity=27.8169014084507, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=203, Percent_Identity=33.9901477832512, Blast_Score=106, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6324126, Length=268, Percent_Identity=27.2388059701493, Blast_Score=79, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21355319, Length=265, Percent_Identity=30.9433962264151, Blast_Score=113, Evalue=1e-25,
Organism=Drosophila melanogaster, GI18859837, Length=198, Percent_Identity=36.8686868686869, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI21357041, Length=272, Percent_Identity=28.6764705882353, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI23397609, Length=271, Percent_Identity=32.4723247232472, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI28571526, Length=273, Percent_Identity=28.5714285714286, Blast_Score=95, Evalue=6e-20,
Organism=Drosophila melanogaster, GI24644339, Length=268, Percent_Identity=28.3582089552239, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24643142, Length=268, Percent_Identity=29.8507462686567, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24639444, Length=267, Percent_Identity=26.2172284644195, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24640492, Length=237, Percent_Identity=27.8481012658228, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI21355631, Length=184, Percent_Identity=30.4347826086957, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21357673, Length=210, Percent_Identity=28.0952380952381, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24644337, Length=258, Percent_Identity=29.0697674418605, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24649181, Length=221, Percent_Identity=27.1493212669683, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI17737361, Length=214, Percent_Identity=27.1028037383178, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI281364892, Length=214, Percent_Identity=25.2336448598131, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28509; Mature: 28377

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MAKVQGKVAFVTGAGRGLGRSFAARLAEEGADIIATDVCSPVSSAPYGMASSSDLDQTVA
CCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEHHHCCCCCCCCCCCCCCCHHHHHHH
EVRALGRHAVAFESDVRDGESIQAGLAKAVVELGRLDIVCANAGFISYGAAVDLAETEWN
HHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCEEECCCEEEECCCCCC
EMIDVHVTGAWNTCKAAVPYLIRSGVGASIVFTSSMAGLRARPGIGHYVTAKHAVVGLMR
CEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHH
TFAIELAPFGVRVNSVHPTSTNTQMIQNSATRQVADGDGADGSVEERRKSGRLLDVPWIE
HHHHHHCCCCEEEECCCCCCCCHHHHHCCCHHEECCCCCCCCCHHHHHHCCCEECCCCHH
AIDVANAVLFLSSEDARYITGVTLPIDAGAMLV
HHHHCCEEEEEECCCCEEEEEEEEEECCCCCCC
>Mature Secondary Structure 
AKVQGKVAFVTGAGRGLGRSFAARLAEEGADIIATDVCSPVSSAPYGMASSSDLDQTVA
CCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEHHHCCCCCCCCCCCCCCCHHHHHHH
EVRALGRHAVAFESDVRDGESIQAGLAKAVVELGRLDIVCANAGFISYGAAVDLAETEWN
HHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCEEECCCEEEECCCCCC
EMIDVHVTGAWNTCKAAVPYLIRSGVGASIVFTSSMAGLRARPGIGHYVTAKHAVVGLMR
CEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHH
TFAIELAPFGVRVNSVHPTSTNTQMIQNSATRQVADGDGADGSVEERRKSGRLLDVPWIE
HHHHHHCCCCEEEECCCCCCCCHHHHHCCCHHEECCCCCCCCCHHHHHHCCCEECCCCHH
AIDVANAVLFLSSEDARYITGVTLPIDAGAMLV
HHHHCCEEEEEECCCCEEEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10473585 [H]