| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316202
Identifier: 158316202
GI number: 158316202
Start: 5286626
End: 5287708
Strand: Reverse
Name: 158316202
Synonym: Franean1_4425
Alternate gene names: NA
Gene position: 5287708-5286626 (Counterclockwise)
Preceding gene: 158316203
Following gene: 158316200
Centisome position: 58.87
GC content: 64.91
Gene sequence:
>1083_bases ATGACCCCGGCGAACACCGACGTGTGCCCAACGATCCGGCCCGGCCAGGTCTGGCTCGACACCGCGGGCCGGCGCATCCA GGCCCACGGGGGCTCGATCATCACGGGCACCGACGGCCTGTTCTACTGGTACGGCGAGAACAAGGAGAGGACGATACCGG GCAGCGGCAACTGGCACTGGGGCGTGCGGGCGTACTCGTCGTCCGACCTGGTCACCTGGACCGACCGGGGCCTCATCATC CCGCCGGTAGCCGGCGATCCCACTTCGCCGTTGCATCCAACGCAAATGATGGATAGGCCACACATCCTGTTCAACGAGCG CACGGGGAAGTACGTGTGCTGGCTTAAGATCATGGGCAGGGACGGCCAGCAGACCCAAACCTCCACCGTCCTCGTCGCCG ACGATCTGCTGGGACCCTACGAAATCGTACGCACCGGGTTGCGGCCGTGTGGCTTCGACGCCGGCGACTTCGATCTAACC GTCGACCCGAAGACGGGCAACGCCTACTACTACTTCGAGAAGGTGCACACCGAGCTCATCTGTGTCGAGCTCACGGACGA CTACACCGACGTCACGGGGAACTACAGCAGCCACTTCCCGCACCCAGGACCGCCCTTCACCCGCGAGGCACCCGCGCACT TCGAGCGCGGCGGATTCCACTACCTCATCACCTCGGGCACGACCGGTTACTTCCCCAACTTCTCCGAGGTCGCGGTCGGC CTGAGCTATCACGGCCCGTTCGACGTCCTCGGTGACCCACATCCCCATGACGCCTCGCGAACCTCGTACCGGTCGCAGAT CAGCTCCGTGTTCAAGCACCCCCACAAGAACGACCTCTACATCGCCCTCGCTGACCGATGGCTCCCGCAACTGCCGGAGG ACATGCCCAACGTCTACGACGTTGTCGCGGCGATGGCGCGCGGCGAGACGCCACCCTCAACCGGCAACGATCAGACGGTG ATGGCGGCGGTGCGCGGCGAGAACACAGCGATCGCCGACTACGTGTGGCTACCGATCCGCTTCGACGACGACCGCCCATC CATCGTTTGGCTCGACGAATGGAGCCCCCACGACTTCGTCTGA
Upstream 100 bases:
>100_bases CCTGGCGAACCGCAGCACACATCGCCGCCAGCGGATAACCACGAGCAACGCGCAACCAGAATACACGACAGTCGAACGCG GCTGATAATGAAGGAGATCG
Downstream 100 bases:
>100_bases GGGCGCCACAACGTCCATCAGCACCGAGGATCCGCGATGAAAGCCGACCGGCTGCGCGAAGGTCGCGTGAAGATGATGGC CGGGTAGCGATCGCCCCAGG
Product: hypothetical protein
Products: NA
Alternate protein names: Beta-Xylosidase; Glycoside Hydrolase Family; Ricin B Lectin; Licheninase; Family; Coagulation Factor 5/8 Type Domain Protein; Ricin-Type Beta-Trefoil Lectin Domain Protein; Beta-Galactosidase; S-Layer Domain Protein; Glycoside Hydrolase Family Beta-Glycosidase; Xylosidase/Arabinofuranosidase; Glycosyl Hydrolase Family; Cna B Domain Protein
Number of amino acids: Translated: 360; Mature: 359
Protein sequence:
>360_residues MTPANTDVCPTIRPGQVWLDTAGRRIQAHGGSIITGTDGLFYWYGENKERTIPGSGNWHWGVRAYSSSDLVTWTDRGLII PPVAGDPTSPLHPTQMMDRPHILFNERTGKYVCWLKIMGRDGQQTQTSTVLVADDLLGPYEIVRTGLRPCGFDAGDFDLT VDPKTGNAYYYFEKVHTELICVELTDDYTDVTGNYSSHFPHPGPPFTREAPAHFERGGFHYLITSGTTGYFPNFSEVAVG LSYHGPFDVLGDPHPHDASRTSYRSQISSVFKHPHKNDLYIALADRWLPQLPEDMPNVYDVVAAMARGETPPSTGNDQTV MAAVRGENTAIADYVWLPIRFDDDRPSIVWLDEWSPHDFV
Sequences:
>Translated_360_residues MTPANTDVCPTIRPGQVWLDTAGRRIQAHGGSIITGTDGLFYWYGENKERTIPGSGNWHWGVRAYSSSDLVTWTDRGLII PPVAGDPTSPLHPTQMMDRPHILFNERTGKYVCWLKIMGRDGQQTQTSTVLVADDLLGPYEIVRTGLRPCGFDAGDFDLT VDPKTGNAYYYFEKVHTELICVELTDDYTDVTGNYSSHFPHPGPPFTREAPAHFERGGFHYLITSGTTGYFPNFSEVAVG LSYHGPFDVLGDPHPHDASRTSYRSQISSVFKHPHKNDLYIALADRWLPQLPEDMPNVYDVVAAMARGETPPSTGNDQTV MAAVRGENTAIADYVWLPIRFDDDRPSIVWLDEWSPHDFV >Mature_359_residues TPANTDVCPTIRPGQVWLDTAGRRIQAHGGSIITGTDGLFYWYGENKERTIPGSGNWHWGVRAYSSSDLVTWTDRGLIIP PVAGDPTSPLHPTQMMDRPHILFNERTGKYVCWLKIMGRDGQQTQTSTVLVADDLLGPYEIVRTGLRPCGFDAGDFDLTV DPKTGNAYYYFEKVHTELICVELTDDYTDVTGNYSSHFPHPGPPFTREAPAHFERGGFHYLITSGTTGYFPNFSEVAVGL SYHGPFDVLGDPHPHDASRTSYRSQISSVFKHPHKNDLYIALADRWLPQLPEDMPNVYDVVAAMARGETPPSTGNDQTVM AAVRGENTAIADYVWLPIRFDDDRPSIVWLDEWSPHDFV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40264; Mature: 40133
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPANTDVCPTIRPGQVWLDTAGRRIQAHGGSIITGTDGLFYWYGENKERTIPGSGNWHW CCCCCCCCCCCCCCCEEEEECCCCEEEECCCEEEECCCCEEEEECCCCCEECCCCCCEEE GVRAYSSSDLVTWTDRGLIIPPVAGDPTSPLHPTQMMDRPHILFNERTGKYVCWLKIMGR EEEEECCCCEEEEECCCEEECCCCCCCCCCCCHHHHCCCCCEEEECCCCCEEEEEEEECC DGQQTQTSTVLVADDLLGPYEIVRTGLRPCGFDAGDFDLTVDPKTGNAYYYFEKVHTELI CCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCEEEEEEEECEEEE CVELTDDYTDVTGNYSSHFPHPGPPFTREAPAHFERGGFHYLITSGTTGYFPNFSEVAVG EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEECCCCCCCCCHHHEEEE LSYHGPFDVLGDPHPHDASRTSYRSQISSVFKHPHKNDLYIALADRWLPQLPEDMPNVYD EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHCCHHHH VVAAMARGETPPSTGNDQTVMAAVRGENTAIADYVWLPIRFDDDRPSIVWLDEWSPHDFV HHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEEEECCCCCCEEEEECCCCCCCC >Mature Secondary Structure TPANTDVCPTIRPGQVWLDTAGRRIQAHGGSIITGTDGLFYWYGENKERTIPGSGNWHW CCCCCCCCCCCCCCEEEEECCCCEEEECCCEEEECCCCEEEEECCCCCEECCCCCCEEE GVRAYSSSDLVTWTDRGLIIPPVAGDPTSPLHPTQMMDRPHILFNERTGKYVCWLKIMGR EEEEECCCCEEEEECCCEEECCCCCCCCCCCCHHHHCCCCCEEEECCCCCEEEEEEEECC DGQQTQTSTVLVADDLLGPYEIVRTGLRPCGFDAGDFDLTVDPKTGNAYYYFEKVHTELI CCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCEEEEEEEECEEEE CVELTDDYTDVTGNYSSHFPHPGPPFTREAPAHFERGGFHYLITSGTTGYFPNFSEVAVG EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEECCCCCCCCCHHHEEEE LSYHGPFDVLGDPHPHDASRTSYRSQISSVFKHPHKNDLYIALADRWLPQLPEDMPNVYD EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHCCHHHH VVAAMARGETPPSTGNDQTVMAAVRGENTAIADYVWLPIRFDDDRPSIVWLDEWSPHDFV HHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEEEECCCCCCEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA