| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158316199
Identifier: 158316199
GI number: 158316199
Start: 5283936
End: 5284700
Strand: Reverse
Name: 158316199
Synonym: Franean1_4422
Alternate gene names: NA
Gene position: 5284700-5283936 (Counterclockwise)
Preceding gene: 158316200
Following gene: 158316198
Centisome position: 58.84
GC content: 66.67
Gene sequence:
>765_bases ATGCTGCGCCATCAGGTGCAGATCGATCCCGATGACCTCGGTGCTGTCCTCGATTTAGCTGCAGTCGGAATCGTCAACGG CGCCTGGCGCAACAGCCCTGTCGAGGACTGGCACAGCCAGGGCCGGCTGCGTGACGGCGACATGCTGCGGATCAACGCCC ACACCAGCTGGCGGGTGCGTGAGATTGTCCGGCGATGGCGCGGCGACCTGGGACTCGGACCGCAGTCACTGCGGGAGGCA TGCGATGGTCTTGACAGCGATGCGACCGACTGGCTCGCCGAGCGGATCTGGCGATGGCTGGTTAACCCTGCCAGACGCCT GCCGACCGGACCGACGCTGGCCGAACTCGCCGGGAGCGACCTGAACGACTACCGCAACCACGCCGATGAGGCGTTAGGTG GATTTGCGGCGATGGCGGAAGAGCGCGGGATGCTCTACGCGTTCTGGAGGGCGGCGGCTCACGGCGGGCTGGCCTGCCGG CATTGGTGGGGAACCCCGGCATGGCCCGCGCTGGTCGACCGCTTCATGCACGCTCTCGATACCTCTGATGACCCGCACTG GTCGTCCGGCGGGAGATGGCAGGTGACTGTGGAGACAGCGCCACACCAGGCCACCGGGCGTGCCGGTCTCCGTCGGCTGC TGATGAGCCGGCCATGGGCTCTCGATTCCGATACGGCGCAATGGGTCGTCGGTGCCGGCATCGGATTTCTTCTCAGCCAT GTTCCTCAACTGCCCGACGACGTCCACGAGGCGCTCCCGCAATAG
Upstream 100 bases:
>100_bases GTCCACGGCAGGCTGGCACAGCGATGTCATGGCTGAGCAGACCCCGGCCGCTTCCGGTAGCACAATGTCCAGGCAGCGGG AACAGGTGCTTGTGGAGGTG
Downstream 100 bases:
>100_bases CCTTCCTCTCGAACCACATCCGCCCGGTTCTGGACCTTTATCATCCAAAACAACCGCCGCGGCCACTGCGAGCTCGCCGT CGAAACCAACCCGAGGCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 254; Mature: 254
Protein sequence:
>254_residues MLRHQVQIDPDDLGAVLDLAAVGIVNGAWRNSPVEDWHSQGRLRDGDMLRINAHTSWRVREIVRRWRGDLGLGPQSLREA CDGLDSDATDWLAERIWRWLVNPARRLPTGPTLAELAGSDLNDYRNHADEALGGFAAMAEERGMLYAFWRAAAHGGLACR HWWGTPAWPALVDRFMHALDTSDDPHWSSGGRWQVTVETAPHQATGRAGLRRLLMSRPWALDSDTAQWVVGAGIGFLLSH VPQLPDDVHEALPQ
Sequences:
>Translated_254_residues MLRHQVQIDPDDLGAVLDLAAVGIVNGAWRNSPVEDWHSQGRLRDGDMLRINAHTSWRVREIVRRWRGDLGLGPQSLREA CDGLDSDATDWLAERIWRWLVNPARRLPTGPTLAELAGSDLNDYRNHADEALGGFAAMAEERGMLYAFWRAAAHGGLACR HWWGTPAWPALVDRFMHALDTSDDPHWSSGGRWQVTVETAPHQATGRAGLRRLLMSRPWALDSDTAQWVVGAGIGFLLSH VPQLPDDVHEALPQ >Mature_254_residues MLRHQVQIDPDDLGAVLDLAAVGIVNGAWRNSPVEDWHSQGRLRDGDMLRINAHTSWRVREIVRRWRGDLGLGPQSLREA CDGLDSDATDWLAERIWRWLVNPARRLPTGPTLAELAGSDLNDYRNHADEALGGFAAMAEERGMLYAFWRAAAHGGLACR HWWGTPAWPALVDRFMHALDTSDDPHWSSGGRWQVTVETAPHQATGRAGLRRLLMSRPWALDSDTAQWVVGAGIGFLLSH VPQLPDDVHEALPQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28345; Mature: 28345
Theoretical pI: Translated: 6.12; Mature: 6.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRHQVQIDPDDLGAVLDLAAVGIVNGAWRNSPVEDWHSQGRLRDGDMLRINAHTSWRVR CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCHHHH EIVRRWRGDLGLGPQSLREACDGLDSDATDWLAERIWRWLVNPARRLPTGPTLAELAGSD HHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHCCC LNDYRNHADEALGGFAAMAEERGMLYAFWRAAAHGGLACRHWWGTPAWPALVDRFMHALD HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHC TSDDPHWSSGGRWQVTVETAPHQATGRAGLRRLLMSRPWALDSDTAQWVVGAGIGFLLSH CCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH VPQLPDDVHEALPQ CCCCCHHHHHHCCC >Mature Secondary Structure MLRHQVQIDPDDLGAVLDLAAVGIVNGAWRNSPVEDWHSQGRLRDGDMLRINAHTSWRVR CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCHHHH EIVRRWRGDLGLGPQSLREACDGLDSDATDWLAERIWRWLVNPARRLPTGPTLAELAGSD HHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHCCC LNDYRNHADEALGGFAAMAEERGMLYAFWRAAAHGGLACRHWWGTPAWPALVDRFMHALD HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHC TSDDPHWSSGGRWQVTVETAPHQATGRAGLRRLLMSRPWALDSDTAQWVVGAGIGFLLSH CCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH VPQLPDDVHEALPQ CCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA