| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is hofG [C]
Identifier: 158314438
GI number: 158314438
Start: 3088998
End: 3091496
Strand: Direct
Name: hofG [C]
Synonym: Franean1_2610
Alternate gene names: 158314438
Gene position: 3088998-3091496 (Clockwise)
Preceding gene: 158314435
Following gene: 158314439
Centisome position: 34.39
GC content: 63.31
Gene sequence:
>2499_bases ATGCAGCCGTTGGCGAACTCCCGGCGAGCCATCCTCCAGGCAACCTACGCGCCAATCGAGACCCCGGTCGACCAGCGCGA AATGCTGCGAGGGCCGGAGAAGCGCGCGCTCCTGCTGATGCTGCGACCTACCTCGGCGGAACTGGAGGCGGTTACGGGCG AAGGGCGTTCGCTTCACCATGCGAAGGACGTCAGGACGCTGATCGAATCGGGTGGCGCGGATGTCAGCGGCGAGATCGCC ATCGCGACACGGCTGCCGGCCCAGGTAGTTCTCGACCTCGCCAGGCAGCGCGTTCGCTCTGACACGTCCAGTCAAGCCGA CCTTGAGCCCGGACAGCAGCGGGTCGCACGGGCGTTCGCCGCCTTCGCGGATCTCCTCAAGATCGAGCCGATCGGCTACC TGCACCTGGAGAAACTGGCGTTCACACCGATCGGTGTCGAGCGTGGTGAGCTGGTCTATTCCGTTCCGCTGGCGCCGGCC GAGGAAATCAACCTCGTTCATCGCGAGTGGTCCAACACCAGCGAGGAATTCGAGCGCCTTGCCACGGATCTGCTCGAGGA GTTCAGCGAGGAGGGTGTTACAGAGAAGAGTGAGCTGCAACAGTCCACCGAGAACCAGTATCAGCACTCGACTGAACTCA GCGCGAGTGTCAACGTGTCCGGCCGCTACGGAACTGTACAGTTCGCGGCGTCCGGCTCGGCCGATGCGGCGACGTCCTCC GAGCGGTCCGAGGAGTTCTCCCGCAACCAGTCGAACACGCTCACCAGGAAGGCGTCTCGGCGGTCGGTCAAAGAACACAA GATTACCTTCAGAGTCGCCTCGGCGTCGGGCGTGGCAGACGAGGCAGTCAAGAAGTTCAAGAACCCGCACCGGAACAAGC CGATTCGGGTCGACTACTACCGGATGATGCGTAAGTGGTCGGTCGACCTGCTGCGGTATGGAATCCGCCTGACGTACGAC CTTGTCGTCCCGGAACCAGGCGCCGACCTGCTCGACAAGATACTCGAAGTTCAGGCGATCGAGGCTGCCCTTCGGGAGGG GTTCGGTTCGGCGAGCGGGCCGCTGTGGGCGCAATTCAATCTCAAGCCGACCGACCTGACCCGAGAAAACTACGCCGACA AGGCGGCCGACTTCGTCGCCACAGTCGAGGCTCCGCCACCAAACAACAAATCGGTCAGCCGGACCGAGAGCCAGCAGTTC GGCACGTCGGACCAGTCGAAGCGGGGCCTGTCGTCCGCACTCGAAATCGACGTCGACCTCATGTACAGCGTCACGTCGGC GAGCGCGAGCTCGGCCGGCTTCGAGTGGCCAGGAAATCGCAGCGACTGGATGCGTGACACGGTCGTCGTGAACGATGCCT ACGTGCAGGCGTACACGCTGGGAAGGTCAGGCAAGGTAGCGGTACCTTATTCTATGAGGTACGCCGCGAGCTTCTCGATC ACCGTGACGCTCGACCTCACGCTGCGCAATGATGCTTTTCTGGCATGGCGGAACAAGGCATGGGTAGCGATTCGGGATAC CGCCGAACGGAGGTACTACGAACAGCGCGCTGTACTCCAACAACGACTGGCCGAACTACAGAAGGAGCTCGGCGCCGCCG ACACTCTCACGCTACGTCGTATGGAGCGAGAGGAGATGATGAAGGGCGCCCTGCGCTGGCTCCTCGGCCCGTCCTTCACG ACAAACGCGAAGACGACCTCTGATTACTACGACACGACCACGGACGGTGTGAAGGACGACGCGACATGGCTCGTCGGCCG CCAACTCGGCGAACGCCTGAGGTTCCTGCAGCAGGCGGTCGAATGGGAGAATCTCCTGTACATCGTCTATCCGTACTTCT GGGCTACCAAAGAGGCCAGGGAAGTCAGGAAGTTCCTCGACCACCCAGACCCGCTGCACCGCGCATTCCTGAGGGCCGGC GCCGCCCGGGTCGTACTCACCATCCGGCCTGGGTTCGAGGCTTCGTTTCTTGAGTTTCTCGGCGGGGAGACTGGGACGCC GGCGCCTTACCTGCGCATCGCGCAAGAAATGGAGGCGTTCGCGAACACCAACTATCCGGGCATCCGGCCAGCGAACGAGG TCGAAGACGCCAGGTCCCTGCTGTCACGGCGGCAGCGGCAGGCATGGAACGACATCCAGCTTCTCCAGGTGCTGCTTGAG GACTACCTCGTTGACAACGACCGCTATCCGGCGTCGCCCGATCCCGGTATGTCCGCGCTCATGCCGTTCGCCAAGGCCCG GGGTGTCGCGATGCCCACCACAGACCCCTGGGACAACGCGTACGTCTACTCGTGTCCGGGCGAGTTCGCCGAGTACGACC TGGCGTCCTACGGCGAGAACGGAGAGCCGGGCGGAACCGGGGACGCGGCCGACATCACGAGTTGGGCGGAGGCGTCACTG GTCGGCCAGTGGTTCGAGTACACCCCGACGAGTGCGCTCGATATTGGCATCGACGTCGATGAACACCTGTCCAGCAGTCG GGCGGTGCCAAGCCAGTGA
Upstream 100 bases:
>100_bases AGAGATCTGGTCCCTGTGGTCGGGCCGTCGGCCTGCCTTGTCAGTCAAGCGCGTCCGACGTGGCGAATCGCCACCATAAA TCTTCGGAGGAACAGACGAG
Downstream 100 bases:
>100_bases ACACGGCTGGTCATCACGCTGTCGGCGAGGAAGCCGGTCTGCCTCTGCTGGAGGCGGCCCTGGCCGCACGTGCGGGGAAA GTCGCCGGCCTCGACGCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: Tyep II Secretion System Protein G
Number of amino acids: Translated: 832; Mature: 832
Protein sequence:
>832_residues MQPLANSRRAILQATYAPIETPVDQREMLRGPEKRALLLMLRPTSAELEAVTGEGRSLHHAKDVRTLIESGGADVSGEIA IATRLPAQVVLDLARQRVRSDTSSQADLEPGQQRVARAFAAFADLLKIEPIGYLHLEKLAFTPIGVERGELVYSVPLAPA EEINLVHREWSNTSEEFERLATDLLEEFSEEGVTEKSELQQSTENQYQHSTELSASVNVSGRYGTVQFAASGSADAATSS ERSEEFSRNQSNTLTRKASRRSVKEHKITFRVASASGVADEAVKKFKNPHRNKPIRVDYYRMMRKWSVDLLRYGIRLTYD LVVPEPGADLLDKILEVQAIEAALREGFGSASGPLWAQFNLKPTDLTRENYADKAADFVATVEAPPPNNKSVSRTESQQF GTSDQSKRGLSSALEIDVDLMYSVTSASASSAGFEWPGNRSDWMRDTVVVNDAYVQAYTLGRSGKVAVPYSMRYAASFSI TVTLDLTLRNDAFLAWRNKAWVAIRDTAERRYYEQRAVLQQRLAELQKELGAADTLTLRRMEREEMMKGALRWLLGPSFT TNAKTTSDYYDTTTDGVKDDATWLVGRQLGERLRFLQQAVEWENLLYIVYPYFWATKEAREVRKFLDHPDPLHRAFLRAG AARVVLTIRPGFEASFLEFLGGETGTPAPYLRIAQEMEAFANTNYPGIRPANEVEDARSLLSRRQRQAWNDIQLLQVLLE DYLVDNDRYPASPDPGMSALMPFAKARGVAMPTTDPWDNAYVYSCPGEFAEYDLASYGENGEPGGTGDAADITSWAEASL VGQWFEYTPTSALDIGIDVDEHLSSSRAVPSQ
Sequences:
>Translated_832_residues MQPLANSRRAILQATYAPIETPVDQREMLRGPEKRALLLMLRPTSAELEAVTGEGRSLHHAKDVRTLIESGGADVSGEIA IATRLPAQVVLDLARQRVRSDTSSQADLEPGQQRVARAFAAFADLLKIEPIGYLHLEKLAFTPIGVERGELVYSVPLAPA EEINLVHREWSNTSEEFERLATDLLEEFSEEGVTEKSELQQSTENQYQHSTELSASVNVSGRYGTVQFAASGSADAATSS ERSEEFSRNQSNTLTRKASRRSVKEHKITFRVASASGVADEAVKKFKNPHRNKPIRVDYYRMMRKWSVDLLRYGIRLTYD LVVPEPGADLLDKILEVQAIEAALREGFGSASGPLWAQFNLKPTDLTRENYADKAADFVATVEAPPPNNKSVSRTESQQF GTSDQSKRGLSSALEIDVDLMYSVTSASASSAGFEWPGNRSDWMRDTVVVNDAYVQAYTLGRSGKVAVPYSMRYAASFSI TVTLDLTLRNDAFLAWRNKAWVAIRDTAERRYYEQRAVLQQRLAELQKELGAADTLTLRRMEREEMMKGALRWLLGPSFT TNAKTTSDYYDTTTDGVKDDATWLVGRQLGERLRFLQQAVEWENLLYIVYPYFWATKEAREVRKFLDHPDPLHRAFLRAG AARVVLTIRPGFEASFLEFLGGETGTPAPYLRIAQEMEAFANTNYPGIRPANEVEDARSLLSRRQRQAWNDIQLLQVLLE DYLVDNDRYPASPDPGMSALMPFAKARGVAMPTTDPWDNAYVYSCPGEFAEYDLASYGENGEPGGTGDAADITSWAEASL VGQWFEYTPTSALDIGIDVDEHLSSSRAVPSQ >Mature_832_residues MQPLANSRRAILQATYAPIETPVDQREMLRGPEKRALLLMLRPTSAELEAVTGEGRSLHHAKDVRTLIESGGADVSGEIA IATRLPAQVVLDLARQRVRSDTSSQADLEPGQQRVARAFAAFADLLKIEPIGYLHLEKLAFTPIGVERGELVYSVPLAPA EEINLVHREWSNTSEEFERLATDLLEEFSEEGVTEKSELQQSTENQYQHSTELSASVNVSGRYGTVQFAASGSADAATSS ERSEEFSRNQSNTLTRKASRRSVKEHKITFRVASASGVADEAVKKFKNPHRNKPIRVDYYRMMRKWSVDLLRYGIRLTYD LVVPEPGADLLDKILEVQAIEAALREGFGSASGPLWAQFNLKPTDLTRENYADKAADFVATVEAPPPNNKSVSRTESQQF GTSDQSKRGLSSALEIDVDLMYSVTSASASSAGFEWPGNRSDWMRDTVVVNDAYVQAYTLGRSGKVAVPYSMRYAASFSI TVTLDLTLRNDAFLAWRNKAWVAIRDTAERRYYEQRAVLQQRLAELQKELGAADTLTLRRMEREEMMKGALRWLLGPSFT TNAKTTSDYYDTTTDGVKDDATWLVGRQLGERLRFLQQAVEWENLLYIVYPYFWATKEAREVRKFLDHPDPLHRAFLRAG AARVVLTIRPGFEASFLEFLGGETGTPAPYLRIAQEMEAFANTNYPGIRPANEVEDARSLLSRRQRQAWNDIQLLQVLLE DYLVDNDRYPASPDPGMSALMPFAKARGVAMPTTDPWDNAYVYSCPGEFAEYDLASYGENGEPGGTGDAADITSWAEASL VGQWFEYTPTSALDIGIDVDEHLSSSRAVPSQ
Specific function: Involved In A General Secretion Pathway (Gsp) For The Export Of Proteins (By Similarity). [C]
COG id: COG2165
COG function: function code NU; Type II secretory pathway, pseudopilin PulG
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 92840; Mature: 92840
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQPLANSRRAILQATYAPIETPVDQREMLRGPEKRALLLMLRPTSAELEAVTGEGRSLHH CCCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEEEEECCCCCCCEEECCCCCCHHH AKDVRTLIESGGADVSGEIAIATRLPAQVVLDLARQRVRSDTSSQADLEPGQQRVARAFA HHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH AFADLLKIEPIGYLHLEKLAFTPIGVERGELVYSVPLAPAEEINLVHREWSNTSEEFERL HHHHHHHCCCCCCEEHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHH ATDLLEEFSEEGVTEKSELQQSTENQYQHSTELSASVNVSGRYGTVQFAASGSADAATSS HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCCCCCCCH ERSEEFSRNQSNTLTRKASRRSVKEHKITFRVASASGVADEAVKKFKNPHRNKPIRVDYY HHHHHHHCCCHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHCCCCCCCCEEEHHH RMMRKWSVDLLRYGIRLTYDLVVPEPGADLLDKILEVQAIEAALREGFGSASGPLWAQFN HHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC LKPTDLTRENYADKAADFVATVEAPPPNNKSVSRTESQQFGTSDQSKRGLSSALEIDVDL CCCCCCCHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHCCCCCHHHHCCHHHHEECHHH MYSVTSASASSAGFEWPGNRSDWMRDTVVVNDAYVQAYTLGRSGKVAVPYSMRYAASFSI EEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEECCCCCEECCEEEEEEEEEEE TVTLDLTLRNDAFLAWRNKAWVAIRDTAERRYYEQRAVLQQRLAELQKELGAADTLTLRR EEEEEEEECCCEEEEECCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH MEREEMMKGALRWLLGPSFTTNAKTTSDYYDTTTDGVKDDATWLVGRQLGERLRFLQQAV HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH EWENLLYIVYPYFWATKEAREVRKFLDHPDPLHRAFLRAGAARVVLTIRPGFEASFLEFL HHCCEEEEEEHHHHCCHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEECCCCCHHHHHHH GGETGTPAPYLRIAQEMEAFANTNYPGIRPANEVEDARSLLSRRQRQAWNDIQLLQVLLE CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH DYLVDNDRYPASPDPGMSALMPFAKARGVAMPTTDPWDNAYVYSCPGEFAEYDLASYGEN HHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHHHHCCCC GEPGGTGDAADITSWAEASLVGQWFEYTPTSALDIGIDVDEHLSSSRAVPSQ CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHCCCCCCCCC >Mature Secondary Structure MQPLANSRRAILQATYAPIETPVDQREMLRGPEKRALLLMLRPTSAELEAVTGEGRSLHH CCCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEEEEECCCCCCCEEECCCCCCHHH AKDVRTLIESGGADVSGEIAIATRLPAQVVLDLARQRVRSDTSSQADLEPGQQRVARAFA HHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH AFADLLKIEPIGYLHLEKLAFTPIGVERGELVYSVPLAPAEEINLVHREWSNTSEEFERL HHHHHHHCCCCCCEEHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHH ATDLLEEFSEEGVTEKSELQQSTENQYQHSTELSASVNVSGRYGTVQFAASGSADAATSS HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCCCCCCCH ERSEEFSRNQSNTLTRKASRRSVKEHKITFRVASASGVADEAVKKFKNPHRNKPIRVDYY HHHHHHHCCCHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHCCCCCCCCEEEHHH RMMRKWSVDLLRYGIRLTYDLVVPEPGADLLDKILEVQAIEAALREGFGSASGPLWAQFN HHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC LKPTDLTRENYADKAADFVATVEAPPPNNKSVSRTESQQFGTSDQSKRGLSSALEIDVDL CCCCCCCHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHCCCCCHHHHCCHHHHEECHHH MYSVTSASASSAGFEWPGNRSDWMRDTVVVNDAYVQAYTLGRSGKVAVPYSMRYAASFSI EEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEECCCCCEECCEEEEEEEEEEE TVTLDLTLRNDAFLAWRNKAWVAIRDTAERRYYEQRAVLQQRLAELQKELGAADTLTLRR EEEEEEEECCCEEEEECCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH MEREEMMKGALRWLLGPSFTTNAKTTSDYYDTTTDGVKDDATWLVGRQLGERLRFLQQAV HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH EWENLLYIVYPYFWATKEAREVRKFLDHPDPLHRAFLRAGAARVVLTIRPGFEASFLEFL HHCCEEEEEEHHHHCCHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEECCCCCHHHHHHH GGETGTPAPYLRIAQEMEAFANTNYPGIRPANEVEDARSLLSRRQRQAWNDIQLLQVLLE CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH DYLVDNDRYPASPDPGMSALMPFAKARGVAMPTTDPWDNAYVYSCPGEFAEYDLASYGEN HHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHHHHCCCC GEPGGTGDAADITSWAEASLVGQWFEYTPTSALDIGIDVDEHLSSSRAVPSQ CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA