Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 158314174

GI number: 158314174

Start: 2790377

End: 2792641

Strand: Direct

Name: yciR [C]

Synonym: Franean1_2342

Alternate gene names: 158314174

Gene position: 2790377-2792641 (Clockwise)

Preceding gene: 158314171

Following gene: 158314177

Centisome position: 31.07

GC content: 66.75

Gene sequence:

>2265_bases
GTGGTCGGCACGGCGAGCGAGGGGCGGCGAGCGACGTTGGCGACTGCTCCTTCTCGCCGGATGGATCACGGTGGCAGCCG
GCCTGGTCATCACTTCCGTCAGGGCGTTGTTCTCGGGCCAGAGCCCGGTGCCACCCTTGTCGGGGACGGAGCCGGCGTAT
CTGGCGTTCATTCCAGCATCCGTTGCCGCGCTGCTGGCTTTTCCTACCGACCCACTCAGCCCGGAGGACGAGCCGGTGCG
CCGAGCCGGCCAGCACGGCACCCATTGGCGGGCTGTCACCGTCATGGACGCGGTGCTCCTCGCCGGCTCGCTGAGCCTGC
TCGGCTGGGTGGTCGTCCTCCAGCCTCTGGTACGTGCGCGAGCACCCGCACCAGCCAGTCTCGCGGCCTTGTTGGCGTTC
GGCATCGGATGTCTCCTGCTACTGATCACCGTCCTGCTCGTAGCGGCGTTCCGACGCCCGCGCCAGAAGAATTCATTCGA
ATTGCTCGGTGGCGGGCTGGCCTCCATCACCATACTTCTGCACGTGTCGCTCTACTTCATCGCGAGCGGCCAACCGGAGC
CCCTGCAACTCGAAGCCGCCAACGCCATTGGCACTGTGATGATCGGGCTTGCCTGCATCGCGCCACCACGGCCATCGACT
GGCTCTGTAGTTGCCGCTGCCCCCTAAGTCTCGAATCCGCTCCTGACTCGTGGCGCGTCCGGTGGGCTGGCTGGCGGGCC
GGACCCGGCGTACGCTGGGTGAGGATATTCCTCCCGTACGTTCCGCTGTCCGCGCTGGGCGTGCTGGCGGTCATTCAGAT
GTCAACCGAGGCGCGGGTCGAACCGATCGAAATATACGGTATCTTCGCGCTCGTGCTGATGGTGCTGATCCGGCAGATGC
TGACTTTGGCGGACAACCAGAAGCTGCTGGACAGGGTTCAGCGCAGCCGTCGCCAGCTGCGCCACCAGGCACTCCATGAC
CCGCTGACCGGGCTGGCGAACCGTGTGCTGTTCGGTGACCGGGTGGAAGAGGCGGTCGCTCGGCGAGCCCGCGGCCGGCT
GGCTCTGCTCTTCTGCGATCTCGATGACTTCAAGAGTGTCAACGACACCCTGGGTCATCCGGCCGGGGACGAATTGCTGA
GGATAACCGCTCGGCGGCTGCTTGGTTGCGTACCGCCCTCGGACACGGTCGCCCGTCTCGGTGGCGACGAGTTCGCGGTT
CTTTTGGCGGACGATGCCGCGGACGCCGAGGCGGTCGGCAAGAGGGCGGCCGCGGTGGTCCGGGCACCGTGCTTTCTTGC
CGGGCAACCGTGCGCCATTCACGCGAGCCTTGGCCTGACAGTCACCGTGCCGGGATCCTCGATAAGTGCCGAGGATCTGG
TCCAGCAGGCGGATCTCGCCATGTACGCAGCCAAGCGGCGGGGGAAAAACAGTCTGGTCGTCTACGATCCTGACATCTTC
GCTCACGGCCGGTCGCCGACGGCGCAACTCGCGCTGTCCCAGTTGTTGCGGGGCGATCCCGCCGGCGGCGTCATCGATGT
CCTCTATCAGCCGATCGTCGATCTGATACACCATCACACGGTCGCGTTTCAGGCTTCAACGTGCTGGCACCATCCGACGC
TCGGGTCGTTCACGGCAGAGCAGACGGTCACGGTCGCGACCGGAGTGGGGCTAAGAGCACAGCTCGAACAGTTGATCCTC
GGCCGCGCTTGCCATGATATCGGCCACTACCGAAGGCAGACAGGGCAGAACGTCGCCGTCTGCGTCGGCGTTTCGGCGGC
GAGGCCGGCTGGTGACTTACTGCCCGACGTCGAGGCGGCGCTGGTGGCCTCCCGCCTCCCCGCCCAGGCCCTGATCCTCA
AGCTTACGGACATGGAGTGCCTCGACGAGGAGGCCGCGCGCAGCCTGCGGACATGCGTCACCCGTGGCCTGCGCCTCGCG
CTGAACGCCATCGCCAGGAACCAGAGCACCTTTCTGGCGCTCGACGAGCTGCCGATCCAGATACTCATGTTCGACAGCTC
CTACGCCGGCGGCCTGACGGGCAGCGCCAACCGGGCCGACCTGCTCCGCCGGGCACTGCTCGCCCTCGCCAGGGACCTCG
GTCTCACGGTCGTTGCCACCGGCGTCCAGAACCGAGAGCAGGCACGCACATTGGCGCACCATGGCTGCCGCTTCGGACAA
GGACAGTTCTTCGGACCGCCAGCCGCACTGCCTGGTCGGCCGCAGCCTCACCGCAATGGCGACGCCGACGGCCGGGCTGG
TTACGGGAACGGGAACCGGCGGTAA

Upstream 100 bases:

>100_bases
CAGTCATGCTCGCTTCCTTCATCCTTCCCTCGCGCACCGCTGACCTGGTGGTCCGCGCCTGCGGCATGGCCGCTATAGCG
TTCCAGGGTGGGTGCGAACT

Downstream 100 bases:

>100_bases
GGAGCCAAACTCGGCTAGTTAGGGCCCGCGGGTCGCACCTCAACAGATGGGTTGGCGACAGCCGCCGCCGAGTCACCGGA
CATCATGTTTGTCGGGCCCG

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 754; Mature: 754

Protein sequence:

>754_residues
MVGTASEGRRATLATAPSRRMDHGGSRPGHHFRQGVVLGPEPGATLVGDGAGVSGVHSSIRCRAAGFSYRPTQPGGRAGA
PSRPARHPLAGCHRHGRGAPRRLAEPARLGGRPPASGTCASTRTSQSRGLVGVRHRMSPATDHRPARSGVPTPAPEEFIR
IARWRAGLHHHTSARVALLHRERPTGAPATRSRQRHWHCDDRACLHRATTAIDWLCSCRCPLSLESAPDSWRVRWAGWRA
GPGVRWVRIFLPYVPLSALGVLAVIQMSTEARVEPIEIYGIFALVLMVLIRQMLTLADNQKLLDRVQRSRRQLRHQALHD
PLTGLANRVLFGDRVEEAVARRARGRLALLFCDLDDFKSVNDTLGHPAGDELLRITARRLLGCVPPSDTVARLGGDEFAV
LLADDAADAEAVGKRAAAVVRAPCFLAGQPCAIHASLGLTVTVPGSSISAEDLVQQADLAMYAAKRRGKNSLVVYDPDIF
AHGRSPTAQLALSQLLRGDPAGGVIDVLYQPIVDLIHHHTVAFQASTCWHHPTLGSFTAEQTVTVATGVGLRAQLEQLIL
GRACHDIGHYRRQTGQNVAVCVGVSAARPAGDLLPDVEAALVASRLPAQALILKLTDMECLDEEAARSLRTCVTRGLRLA
LNAIARNQSTFLALDELPIQILMFDSSYAGGLTGSANRADLLRRALLALARDLGLTVVATGVQNREQARTLAHHGCRFGQ
GQFFGPPAALPGRPQPHRNGDADGRAGYGNGNRR

Sequences:

>Translated_754_residues
MVGTASEGRRATLATAPSRRMDHGGSRPGHHFRQGVVLGPEPGATLVGDGAGVSGVHSSIRCRAAGFSYRPTQPGGRAGA
PSRPARHPLAGCHRHGRGAPRRLAEPARLGGRPPASGTCASTRTSQSRGLVGVRHRMSPATDHRPARSGVPTPAPEEFIR
IARWRAGLHHHTSARVALLHRERPTGAPATRSRQRHWHCDDRACLHRATTAIDWLCSCRCPLSLESAPDSWRVRWAGWRA
GPGVRWVRIFLPYVPLSALGVLAVIQMSTEARVEPIEIYGIFALVLMVLIRQMLTLADNQKLLDRVQRSRRQLRHQALHD
PLTGLANRVLFGDRVEEAVARRARGRLALLFCDLDDFKSVNDTLGHPAGDELLRITARRLLGCVPPSDTVARLGGDEFAV
LLADDAADAEAVGKRAAAVVRAPCFLAGQPCAIHASLGLTVTVPGSSISAEDLVQQADLAMYAAKRRGKNSLVVYDPDIF
AHGRSPTAQLALSQLLRGDPAGGVIDVLYQPIVDLIHHHTVAFQASTCWHHPTLGSFTAEQTVTVATGVGLRAQLEQLIL
GRACHDIGHYRRQTGQNVAVCVGVSAARPAGDLLPDVEAALVASRLPAQALILKLTDMECLDEEAARSLRTCVTRGLRLA
LNAIARNQSTFLALDELPIQILMFDSSYAGGLTGSANRADLLRRALLALARDLGLTVVATGVQNREQARTLAHHGCRFGQ
GQFFGPPAALPGRPQPHRNGDADGRAGYGNGNRR
>Mature_754_residues
MVGTASEGRRATLATAPSRRMDHGGSRPGHHFRQGVVLGPEPGATLVGDGAGVSGVHSSIRCRAAGFSYRPTQPGGRAGA
PSRPARHPLAGCHRHGRGAPRRLAEPARLGGRPPASGTCASTRTSQSRGLVGVRHRMSPATDHRPARSGVPTPAPEEFIR
IARWRAGLHHHTSARVALLHRERPTGAPATRSRQRHWHCDDRACLHRATTAIDWLCSCRCPLSLESAPDSWRVRWAGWRA
GPGVRWVRIFLPYVPLSALGVLAVIQMSTEARVEPIEIYGIFALVLMVLIRQMLTLADNQKLLDRVQRSRRQLRHQALHD
PLTGLANRVLFGDRVEEAVARRARGRLALLFCDLDDFKSVNDTLGHPAGDELLRITARRLLGCVPPSDTVARLGGDEFAV
LLADDAADAEAVGKRAAAVVRAPCFLAGQPCAIHASLGLTVTVPGSSISAEDLVQQADLAMYAAKRRGKNSLVVYDPDIF
AHGRSPTAQLALSQLLRGDPAGGVIDVLYQPIVDLIHHHTVAFQASTCWHHPTLGSFTAEQTVTVATGVGLRAQLEQLIL
GRACHDIGHYRRQTGQNVAVCVGVSAARPAGDLLPDVEAALVASRLPAQALILKLTDMECLDEEAARSLRTCVTRGLRLA
LNAIARNQSTFLALDELPIQILMFDSSYAGGLTGSANRADLLRRALLALARDLGLTVVATGVQNREQARTLAHHGCRFGQ
GQFFGPPAALPGRPQPHRNGDADGRAGYGNGNRR

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=425, Percent_Identity=26.3529411764706, Blast_Score=132, Evalue=9e-32,
Organism=Escherichia coli, GI87081921, Length=434, Percent_Identity=23.2718894009217, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1788381, Length=365, Percent_Identity=29.3150684931507, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1788956, Length=187, Percent_Identity=37.9679144385027, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI1787262, Length=173, Percent_Identity=33.5260115606936, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI145693134, Length=197, Percent_Identity=33.502538071066, Blast_Score=91, Evalue=4e-19,
Organism=Escherichia coli, GI226510982, Length=444, Percent_Identity=23.6486486486486, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI87081881, Length=253, Percent_Identity=32.4110671936759, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI87081977, Length=182, Percent_Identity=30.7692307692308, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1786584, Length=218, Percent_Identity=29.3577981651376, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI87082007, Length=210, Percent_Identity=29.0476190476191, Blast_Score=73, Evalue=8e-14,
Organism=Escherichia coli, GI87081980, Length=231, Percent_Identity=22.9437229437229, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=32.9268292682927, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI87081974, Length=124, Percent_Identity=29.8387096774194, Blast_Score=68, Evalue=3e-12,
Organism=Escherichia coli, GI1788085, Length=162, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1788502, Length=230, Percent_Identity=24.3478260869565, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 81043; Mature: 81043

Theoretical pI: Translated: 10.69; Mature: 10.69

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGTASEGRRATLATAPSRRMDHGGSRPGHHFRQGVVLGPEPGATLVGDGAGVSGVHSSI
CCCCCCCCCEEEEECCCCHHHCCCCCCCCHHHHCCEEECCCCCCEEEECCCCCHHHHHHH
RCRAAGFSYRPTQPGGRAGAPSRPARHPLAGCHRHGRGAPRRLAEPARLGGRPPASGTCA
EEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHCCHHHCCCCCCCCCCCC
STRTSQSRGLVGVRHRMSPATDHRPARSGVPTPAPEEFIRIARWRAGLHHHTSARVALLH
CCCCCCCCCCEEHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHCCCCCEEEEEE
RERPTGAPATRSRQRHWHCDDRACLHRATTAIDWLCSCRCPLSLESAPDSWRVRWAGWRA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC
GPGVRWVRIFLPYVPLSALGVLAVIQMSTEARVEPIEIYGIFALVLMVLIRQMLTLADNQ
CCCCEEEEEHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCH
KLLDRVQRSRRQLRHQALHDPLTGLANRVLFGDRVEEAVARRARGRLALLFCDLDDFKSV
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
NDTLGHPAGDELLRITARRLLGCVPPSDTVARLGGDEFAVLLADDAADAEAVGKRAAAVV
HHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHH
RAPCFLAGQPCAIHASLGLTVTVPGSSISAEDLVQQADLAMYAAKRRGKNSLVVYDPDIF
HCCHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCE
AHGRSPTAQLALSQLLRGDPAGGVIDVLYQPIVDLIHHHTVAFQASTCWHHPTLGSFTAE
ECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCC
QTVTVATGVGLRAQLEQLILGRACHDIGHYRRQTGQNVAVCVGVSAARPAGDLLPDVEAA
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHH
LVASRLPAQALILKLTDMECLDEEAARSLRTCVTRGLRLALNAIARNQSTFLALDELPIQ
HHHHHCCHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEE
ILMFDSSYAGGLTGSANRADLLRRALLALARDLGLTVVATGVQNREQARTLAHHGCRFGQ
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCCC
GQFFGPPAALPGRPQPHRNGDADGRAGYGNGNRR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVGTASEGRRATLATAPSRRMDHGGSRPGHHFRQGVVLGPEPGATLVGDGAGVSGVHSSI
CCCCCCCCCEEEEECCCCHHHCCCCCCCCHHHHCCEEECCCCCCEEEECCCCCHHHHHHH
RCRAAGFSYRPTQPGGRAGAPSRPARHPLAGCHRHGRGAPRRLAEPARLGGRPPASGTCA
EEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHCCHHHCCCCCCCCCCCC
STRTSQSRGLVGVRHRMSPATDHRPARSGVPTPAPEEFIRIARWRAGLHHHTSARVALLH
CCCCCCCCCCEEHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHCCCCCEEEEEE
RERPTGAPATRSRQRHWHCDDRACLHRATTAIDWLCSCRCPLSLESAPDSWRVRWAGWRA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC
GPGVRWVRIFLPYVPLSALGVLAVIQMSTEARVEPIEIYGIFALVLMVLIRQMLTLADNQ
CCCCEEEEEHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCH
KLLDRVQRSRRQLRHQALHDPLTGLANRVLFGDRVEEAVARRARGRLALLFCDLDDFKSV
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
NDTLGHPAGDELLRITARRLLGCVPPSDTVARLGGDEFAVLLADDAADAEAVGKRAAAVV
HHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHH
RAPCFLAGQPCAIHASLGLTVTVPGSSISAEDLVQQADLAMYAAKRRGKNSLVVYDPDIF
HCCHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCE
AHGRSPTAQLALSQLLRGDPAGGVIDVLYQPIVDLIHHHTVAFQASTCWHHPTLGSFTAE
ECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCC
QTVTVATGVGLRAQLEQLILGRACHDIGHYRRQTGQNVAVCVGVSAARPAGDLLPDVEAA
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHH
LVASRLPAQALILKLTDMECLDEEAARSLRTCVTRGLRLALNAIARNQSTFLALDELPIQ
HHHHHCCHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEE
ILMFDSSYAGGLTGSANRADLLRRALLALARDLGLTVVATGVQNREQARTLAHHGCRFGQ
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCCC
GQFFGPPAALPGRPQPHRNGDADGRAGYGNGNRR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]