| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158314171
Identifier: 158314171
GI number: 158314171
Start: 2786385
End: 2787302
Strand: Direct
Name: 158314171
Synonym: Franean1_2339
Alternate gene names: NA
Gene position: 2786385-2787302 (Clockwise)
Preceding gene: 158314170
Following gene: 158314174
Centisome position: 31.02
GC content: 70.48
Gene sequence:
>918_bases ATGCCGCGCAAAGTGCCCTTCGCCGATCTCGCGGGAGGCGGGACGGGAAGGCCGGCGGCGGTCGACATCAACACCGACGA CCCGTTCCTCCTCCTCTTCATCCTCGGTGGCAGCCGTGCGCGGCCACCCTGCCCGGGAGTGGACTTCCCTCGCGCGCTAC GCGAACGCCGTACCCGCCGTCATCTCAGCCAGCTCGACCTGGCGCTGCGGGCGGGCACCACCCAGCGGCACCTCAGCTTC ATCGAGTCCGGCAGATCCGCCCCCGGCCGGAACATGGTCGTACGCCTGGCCGAGTCACTCGAACTGCCGCTGCGGGAGCG TGCTGAGCTGCTGTTGGCTGCCGGGTACGCGCCTATCTACCCGCAGAGCCCACTCGACGACCCGGTGTTGGCCCCTGTGC GCACCGCGATCGACCATATCGTCCACGGGCACCTGCCGTACCCGGCGCTGGTCGTGGACCGTAACGGCGACCTGATCGCC GCGAACGACGCGTTCGATCTGATCACCGAGGGCGCGGCGCCCGAGCTGGTCGGTCCGGGCAAGAACATCTACCGCCTCGC GCTGCATCCCGAGGGCCTGGCGCCCCGCATCCGCAACTTCGCGGAATGGGCGCGCCACATCCTGGCGTGCCTTGGCCACG TGGCGGAGCTGCGCGCCGAACTTACGAGGTACGTCCCCGAGCTGGCGCCGTCCGACGGGCAGCTCGGTTTCGCCGTCCCG CTTCACCTGGGGTCATCGCGCGGTGAGCTGCGCCTGCTGACGACCGTGACGACCTTCGCCACCGCCGTCGATGTGACCCT CGCCGAGCTGAAGTTGGAGGCGTTCCTGCCGGTCGACCCGGCGACGGCCAAGGCCCTCTCGGTCGCCGCCGGGGCGGTGT CTCCCGCGACTCCCGGTCAGGCTCCCGGGAACATGTAG
Upstream 100 bases:
>100_bases CGATTCGCGGGCTGACGGGTGATCGCTCAGGAGACGCCCCGTCGTCGGGCGCGGCTGCTACGGGGCGAGCTCGTCGATCG TCAGTCCGACGTCGTTGAGA
Downstream 100 bases:
>100_bases CCGACCTTGCTCCGGCCGTCGTCGTCGAGCACAGCGAACTCCAGGCCGCCTCCCGCCACAGTCAGTGGACGAGGCCCCTC GAAGGTCACCCGCGCAGAAC
Product: XRE family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator XRE Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Domain Protein; Xre Family xin-Antitoxin System Antitoxin Component; Helix-Turn-Helix Transcriptional Regulatory Protein; HTH-Type Transcriptional Regulator; Transcriptional Regulator XRE Family Protein; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator Xre Family
Number of amino acids: Translated: 305; Mature: 304
Protein sequence:
>305_residues MPRKVPFADLAGGGTGRPAAVDINTDDPFLLLFILGGSRARPPCPGVDFPRALRERRTRRHLSQLDLALRAGTTQRHLSF IESGRSAPGRNMVVRLAESLELPLRERAELLLAAGYAPIYPQSPLDDPVLAPVRTAIDHIVHGHLPYPALVVDRNGDLIA ANDAFDLITEGAAPELVGPGKNIYRLALHPEGLAPRIRNFAEWARHILACLGHVAELRAELTRYVPELAPSDGQLGFAVP LHLGSSRGELRLLTTVTTFATAVDVTLAELKLEAFLPVDPATAKALSVAAGAVSPATPGQAPGNM
Sequences:
>Translated_305_residues MPRKVPFADLAGGGTGRPAAVDINTDDPFLLLFILGGSRARPPCPGVDFPRALRERRTRRHLSQLDLALRAGTTQRHLSF IESGRSAPGRNMVVRLAESLELPLRERAELLLAAGYAPIYPQSPLDDPVLAPVRTAIDHIVHGHLPYPALVVDRNGDLIA ANDAFDLITEGAAPELVGPGKNIYRLALHPEGLAPRIRNFAEWARHILACLGHVAELRAELTRYVPELAPSDGQLGFAVP LHLGSSRGELRLLTTVTTFATAVDVTLAELKLEAFLPVDPATAKALSVAAGAVSPATPGQAPGNM >Mature_304_residues PRKVPFADLAGGGTGRPAAVDINTDDPFLLLFILGGSRARPPCPGVDFPRALRERRTRRHLSQLDLALRAGTTQRHLSFI ESGRSAPGRNMVVRLAESLELPLRERAELLLAAGYAPIYPQSPLDDPVLAPVRTAIDHIVHGHLPYPALVVDRNGDLIAA NDAFDLITEGAAPELVGPGKNIYRLALHPEGLAPRIRNFAEWARHILACLGHVAELRAELTRYVPELAPSDGQLGFAVPL HLGSSRGELRLLTTVTTFATAVDVTLAELKLEAFLPVDPATAKALSVAAGAVSPATPGQAPGNM
Specific function: Unknown
COG id: COG1396
COG function: function code K; Predicted transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32571; Mature: 32440
Theoretical pI: Translated: 7.33; Mature: 7.33
Prosite motif: PS50943 HTH_CROC1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRKVPFADLAGGGTGRPAAVDINTDDPFLLLFILGGSRARPPCPGVDFPRALRERRTRR CCCCCCCHHHCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH HLSQLDLALRAGTTQRHLSFIESGRSAPGRNMVVRLAESLELPLRERAELLLAAGYAPIY HHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC PQSPLDDPVLAPVRTAIDHIVHGHLPYPALVVDRNGDLIAANDAFDLITEGAAPELVGPG CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCHHHHHHCCCCCCCCCCC KNIYRLALHPEGLAPRIRNFAEWARHILACLGHVAELRAELTRYVPELAPSDGQLGFAVP CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE LHLGSSRGELRLLTTVTTFATAVDVTLAELKLEAFLPVDPATAKALSVAAGAVSPATPGQ EEECCCCCCEEEEEHHHHHHHHHHHHHHHHEEHHCCCCCCHHHHHHHHHHCCCCCCCCCC APGNM CCCCC >Mature Secondary Structure PRKVPFADLAGGGTGRPAAVDINTDDPFLLLFILGGSRARPPCPGVDFPRALRERRTRR CCCCCCHHHCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH HLSQLDLALRAGTTQRHLSFIESGRSAPGRNMVVRLAESLELPLRERAELLLAAGYAPIY HHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC PQSPLDDPVLAPVRTAIDHIVHGHLPYPALVVDRNGDLIAANDAFDLITEGAAPELVGPG CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCHHHHHHCCCCCCCCCCC KNIYRLALHPEGLAPRIRNFAEWARHILACLGHVAELRAELTRYVPELAPSDGQLGFAVP CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE LHLGSSRGELRLLTTVTTFATAVDVTLAELKLEAFLPVDPATAKALSVAAGAVSPATPGQ EEECCCCCCEEEEEHHHHHHHHHHHHHHHHEEHHCCCCCCHHHHHHHHHHCCCCCCCCCC APGNM CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA