| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158314077
Identifier: 158314077
GI number: 158314077
Start: 2681725
End: 2683155
Strand: Direct
Name: 158314077
Synonym: Franean1_2244
Alternate gene names: NA
Gene position: 2681725-2683155 (Clockwise)
Preceding gene: 158314075
Following gene: 158314078
Centisome position: 29.86
GC content: 72.54
Gene sequence:
>1431_bases ATGTCCCGCTCGATGATGAGCTTGATACGCGCGCCCCGAGGCGCCGTTCCGTCCGGTTCCGGTTCCGGTTCCGATCAGGA TCGGGCCTCCGACCGGAGGGGGTCGCCCGCCACCCGCCGTCCGCTGGTCCGGCGCCGGTCGGAGGCCGTGCGGCCCGCCG GGATCATCCGGTCGCGGCTCGCCGCGGCCTCCGGCGTGCTCGCCGCGGCCGTGGTCCTGGCTTCCTGCTCCTCCGGGGGC GGGGGCACCGGCCCGGGCCAGAACGAGCCACCGCGCCCGGCCGCGCCGACCGTGACGGTGACCCCGGCCGACGGCGCTGC CGGCATCGCGCTCACCGAGTCGATCGTGGTGAAGAGCAACGCGCCGCTGGCGTCGGTGACCGTGGCCCGCGGCGCGAGCC CGACGGAGAAGACCGACCCCGGCACGCTGGAGGGGACCTTCTCCGCCGACCGCCGGACCTGGACGTCCGCGGGTGGGTTG TTCTCCGACACCCGCTACGACATCCAGGCGGCCACCGCGCCGGCCCAGGGGCTGGACGGCACCAGGAACATCGCATCGAG CTTCACCACCGGCGTCCCGGACAAGGCGTTCAAGGTGTCGTGGGAGCCGGTCGCCGGTCAGACCGTCGGGGTCGGCGCCC CGATCAGCCTGACCTTCAGCGCTCCGGTCAAGGACCGCGCGGCGGTGCAGAGCCGCCTGGCGGTGAACGCCGACCCGCCG GTCCTCGGCGCCTGGAACTGGATGTCGGACCGGATGGCCGTGTGGCGCCCGCAGCAGTACTGGGCGCCCGGGACGAAGGT GCACGTGGAGGCCAACCTCGCGGGCTTCGACTCCGGCACCGGCTGGATCGGGGTCAAGGACCGCTCGATGGACTTCGCGA TCGGGGCCGCCCAGATCAGCAAGGTCGACGCGGCCACCCACGTGATGCAGGTGTTCCAGAACGGCCAGCTCGTGCGGACC ATGCCGATCAGCGGTGGCAAGCCCGGGTTCCTGACCATGGAGGGCCCGCACAACGTGCTGGGCAAGGCCCCGATGGTGAT CATGGACTCGGCGACGGTCGGCGTGCCGAAGGGCAACCCGGAGTACTACTACGAAGAGGTGCAGTGGGCCGTCCACTACA CCAGCGGTGGGCAGTACGTGCACTCCGCTCCGTGGTCAGTGGCGTCGCAGGGCCGGGCGAACGTCTCGCACGGGTGCGTG AACGCCTCCCCGGCGGACGCGCAGTGGTTCTACAACTTCAGTCAGTTCGGCGACATCGTCGACATCAGCAACACCGGTCG CCCGGCGGATACCCGGCAGCTCGGCAACGAGTGGTCCGTCCCGTGGGACACCTGGAAGGCGGGCAGCGCGCTGCCCGTTG ACCAGCCCGCGGCCAGCGGTGCGCTGGCGGGCGCTGCGCCCGGCGCGGGGCTGCCCGCCGGTCGGACCTGA
Upstream 100 bases:
>100_bases CGGTGTCCGCAGGTCACGGCGGCCCGCTGTCCGGCAAGCCACGAACCGGCGCGATGCGTTGCCCCGCCTCACCGGTTCGG TCTTCGGAAGTAGGCCACGC
Downstream 100 bases:
>100_bases CCGGCAGCCGGTCCCGCACCGAGGGCGGGTGGCCACGGAGGAACGTCTCCGTGGCCACCCGCCCTCGTCGTTCGAGATCG GCCGTCCGTGATTGGCTGGA
Product: ErfK/YbiS/YcfS/YnhG family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 476; Mature: 475
Protein sequence:
>476_residues MSRSMMSLIRAPRGAVPSGSGSGSDQDRASDRRGSPATRRPLVRRRSEAVRPAGIIRSRLAAASGVLAAAVVLASCSSGG GGTGPGQNEPPRPAAPTVTVTPADGAAGIALTESIVVKSNAPLASVTVARGASPTEKTDPGTLEGTFSADRRTWTSAGGL FSDTRYDIQAATAPAQGLDGTRNIASSFTTGVPDKAFKVSWEPVAGQTVGVGAPISLTFSAPVKDRAAVQSRLAVNADPP VLGAWNWMSDRMAVWRPQQYWAPGTKVHVEANLAGFDSGTGWIGVKDRSMDFAIGAAQISKVDAATHVMQVFQNGQLVRT MPISGGKPGFLTMEGPHNVLGKAPMVIMDSATVGVPKGNPEYYYEEVQWAVHYTSGGQYVHSAPWSVASQGRANVSHGCV NASPADAQWFYNFSQFGDIVDISNTGRPADTRQLGNEWSVPWDTWKAGSALPVDQPAASGALAGAAPGAGLPAGRT
Sequences:
>Translated_476_residues MSRSMMSLIRAPRGAVPSGSGSGSDQDRASDRRGSPATRRPLVRRRSEAVRPAGIIRSRLAAASGVLAAAVVLASCSSGG GGTGPGQNEPPRPAAPTVTVTPADGAAGIALTESIVVKSNAPLASVTVARGASPTEKTDPGTLEGTFSADRRTWTSAGGL FSDTRYDIQAATAPAQGLDGTRNIASSFTTGVPDKAFKVSWEPVAGQTVGVGAPISLTFSAPVKDRAAVQSRLAVNADPP VLGAWNWMSDRMAVWRPQQYWAPGTKVHVEANLAGFDSGTGWIGVKDRSMDFAIGAAQISKVDAATHVMQVFQNGQLVRT MPISGGKPGFLTMEGPHNVLGKAPMVIMDSATVGVPKGNPEYYYEEVQWAVHYTSGGQYVHSAPWSVASQGRANVSHGCV NASPADAQWFYNFSQFGDIVDISNTGRPADTRQLGNEWSVPWDTWKAGSALPVDQPAASGALAGAAPGAGLPAGRT >Mature_475_residues SRSMMSLIRAPRGAVPSGSGSGSDQDRASDRRGSPATRRPLVRRRSEAVRPAGIIRSRLAAASGVLAAAVVLASCSSGGG GTGPGQNEPPRPAAPTVTVTPADGAAGIALTESIVVKSNAPLASVTVARGASPTEKTDPGTLEGTFSADRRTWTSAGGLF SDTRYDIQAATAPAQGLDGTRNIASSFTTGVPDKAFKVSWEPVAGQTVGVGAPISLTFSAPVKDRAAVQSRLAVNADPPV LGAWNWMSDRMAVWRPQQYWAPGTKVHVEANLAGFDSGTGWIGVKDRSMDFAIGAAQISKVDAATHVMQVFQNGQLVRTM PISGGKPGFLTMEGPHNVLGKAPMVIMDSATVGVPKGNPEYYYEEVQWAVHYTSGGQYVHSAPWSVASQGRANVSHGCVN ASPADAQWFYNFSQFGDIVDISNTGRPADTRQLGNEWSVPWDTWKAGSALPVDQPAASGALAGAAPGAGLPAGRT
Specific function: Unknown
COG id: COG1376
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the YkuD family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005490 [H]
Pfam domain/function: PF03734 YkuD [H]
EC number: NA
Molecular weight: Translated: 49348; Mature: 49216
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRSMMSLIRAPRGAVPSGSGSGSDQDRASDRRGSPATRRPLVRRRSEAVRPAGIIRSRL CCHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH AAASGVLAAAVVLASCSSGGGGTGPGQNEPPRPAAPTVTVTPADGAAGIALTESIVVKSN HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEEECC APLASVTVARGASPTEKTDPGTLEGTFSADRRTWTSAGGLFSDTRYDIQAATAPAQGLDG CCEEEEEEECCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCEEEEEECCCCCCCCC TRNIASSFTTGVPDKAFKVSWEPVAGQTVGVGAPISLTFSAPVKDRAAVQSRLAVNADPP HHHHHHHHHCCCCCCCEEEECCCCCCCEECCCCCEEEEEECCCCHHHHHHHHHEECCCCC VLGAWNWMSDRMAVWRPQQYWAPGTKVHVEANLAGFDSGTGWIGVKDRSMDFAIGAAQIS EEEECCCCCCCCEEECCHHHCCCCCEEEEEEEEECCCCCCCEEEEECCCCEEEECHHHHH KVDAATHVMQVFQNGQLVRTMPISGGKPGFLTMEGPHNVLGKAPMVIMDSATVGVPKGNP HHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCHHHHCCCCEEEEECCEECCCCCCH EYYYEEVQWAVHYTSGGQYVHSAPWSVASQGRANVSHGCVNASPADAQWFYNFSQFGDIV HHEEEEEEEEEEECCCCCEEECCCCHHHCCCCCCCCCCCCCCCCCCHHEEECHHHCCCEE DISNTGRPADTRQLGNEWSVPWDTWKAGSALPVDQPAASGALAGAAPGAGLPAGRT EECCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SRSMMSLIRAPRGAVPSGSGSGSDQDRASDRRGSPATRRPLVRRRSEAVRPAGIIRSRL CHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH AAASGVLAAAVVLASCSSGGGGTGPGQNEPPRPAAPTVTVTPADGAAGIALTESIVVKSN HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEEECC APLASVTVARGASPTEKTDPGTLEGTFSADRRTWTSAGGLFSDTRYDIQAATAPAQGLDG CCEEEEEEECCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCEEEEEECCCCCCCCC TRNIASSFTTGVPDKAFKVSWEPVAGQTVGVGAPISLTFSAPVKDRAAVQSRLAVNADPP HHHHHHHHHCCCCCCCEEEECCCCCCCEECCCCCEEEEEECCCCHHHHHHHHHEECCCCC VLGAWNWMSDRMAVWRPQQYWAPGTKVHVEANLAGFDSGTGWIGVKDRSMDFAIGAAQIS EEEECCCCCCCCEEECCHHHCCCCCEEEEEEEEECCCCCCCEEEEECCCCEEEECHHHHH KVDAATHVMQVFQNGQLVRTMPISGGKPGFLTMEGPHNVLGKAPMVIMDSATVGVPKGNP HHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCHHHHCCCCEEEEECCEECCCCCCH EYYYEEVQWAVHYTSGGQYVHSAPWSVASQGRANVSHGCVNASPADAQWFYNFSQFGDIV HHEEEEEEEEEEECCCCCEEECCCCHHHCCCCCCCCCCCCCCCCCCHHEEECHHHCCCEE DISNTGRPADTRQLGNEWSVPWDTWKAGSALPVDQPAASGALAGAAPGAGLPAGRT EECCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]