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The map label for this gene is ctaD2 [H]

Identifier: 158313638

GI number: 158313638

Start: 2164670

End: 2166376

Strand: Direct

Name: ctaD2 [H]

Synonym: Franean1_1802

Alternate gene names: 158313638

Gene position: 2164670-2166376 (Clockwise)

Preceding gene: 158313637

Following gene: 158313639

Centisome position: 24.1

GC content: 66.14

Gene sequence:

>1707_bases
GTGACCCTTCTGCACGAGTCGCCCGCCGGGCCGGCCGGGCACGCCCATGAGCCGGTGAACCACGAGAAGCCGGCGATCGC
GAACCTGCTCGGATACCTGAGGACGACGTCCCACAAGGACATCGCGATCATGTACTTCCTGACGTCATTCGCGTTCTTCG
TCATCGCCGGCATCCTCGCGATCTTCATCCGTGGCGAGCTGGCCCGCCCGGGGCTGCAGTACTTCTCCAACGACCAGTAC
AACCAGTTCTTCACCATGCACGGCACGCTGATGCTGCTGATGTTCGCGACGCCGCTGGCGTTCGCGTTCGCCAACTACCT
CGTGCCGCTGCAGATCGGCTCGCCGGACGTCGCGTTCCCGCGGCTGAACGCGCTGTCGTACTGGCTGTTCCTGTTCGGCA
GCCTCACCGTGTTCGCCGGGTTCCTGAGCCCGGGGGGTGCGGCCTCGTTCGGCTGGTTCGCCTACGCGCCGCTGAGCAAC
CAGCTCTACTCGCCCGGGGTCGGTTCCGACCTGTGGGTGCTCGGCCTGACGGTGCAGGGGCTCGGCACGATCCTCGGTGC
CGTCAACTTCATCACCACGATCCTGTGCCTGCGCGCCCCCGGCATGACGATGTTCCGGATGCCGATCTTCTGCTGGAACC
TGCTGGTCACCTCGATCCTGGTGCTGGTGGCGTTCCCGGTGCTGGCCGCCGCCCTGCTCGCGCTCGCGGCGGACCGAAGG
TTCGGGGCCCACATCTTCGACGCCGAGAACGGCGGCGCGATGCTGTGGCAGCACCTGTTCTGGTTCTTCGGGCATCCCGA
GGTCTACATCATCGCGCTGCCGTTCTTCGGGATCGTCACCGAGATCATCCCGGTGTTCTCCCGCAAGCCGCTGTTCGGCT
ACAAGGGCCTGGTGTTCGCCACCATCAGCATCGGGGCCCTGTCCGTCGCGGTGTGGGCGCACCACATGTTCGTCACCGGC
GCGGTGCTGCTGCCCTTCTTCGCCTTCCTGTCGTTCCTGATCGCGGTGCCCACCGGCATCAAGTTCTTCAACTGGATCGG
CACGATGTGGCGCGGGCAGATCAGCTTCGAGGCGCCGATGCTGTTCGCGGTCGGCTTCCTGGTGACGTTCCTGTTCGGTG
GTCTCACCGGTGTGCTGCTGGCCAGCCCGCCGATCGACTTCCATGTCAGTGACAGCTACTTCGTGGTCGGACACTTCCAC
TACGTCGTCGCCGGCCTCATGTTCGCGGCCTTCGCGGGTGTCTACTTCTGGTTCCCGAAGGTCACGGGCCGGATGCTGAA
CGAGAAGCTGGCGAAGCTGCACTTCTGGACGCTGTTCCTGGGCTTCAACGCCACCTTCCTGGTGTTCCACTGGCTGGGCA
CCCAGGGCATGCCCCGGCGGTTCGCGGACTACGGCCCGAACGACGGCTTCACCACCCTGAACACGGTCGCGACGGCGGGC
TCGTTCCTGATGGGCCTGTCCACGCTGCCGCTGCTGTACAACCTGTGGTACTCGTACCGCAAGGGCCCGATCGCCGCGGT
CGACGACCCGTGGGGCTACTCCAACTCGCTGGAGTGGGCGACGTCCTGCCCGCCGCCCCGGCACAACTTCCGGTCGCTGC
CGCGCATCCGCTCCGAGCGACCCGCGTTTGACCTGCACTACCCGGCGGTCGTCGGTAGGGCGGATTACCACGCCACACCG
GAACTCGGTCAGGGAGCCGCGCGATGA

Upstream 100 bases:

>100_bases
AGGTCGTGCCGGGCGCCGAGTACGACCGCTTCATCGAGGAACGGGAGAGCGCCGCGATCAGCGCGTCGCCGTCCTCCGGC
GTCACCACCGGGAGTGTCCA

Downstream 100 bases:

>100_bases
AGGTAGAAGGCTTCATCTTCAACTTCTTCGGCTTCTTCGCCGGAGCGATGGCCCTGGTCTACTGGTTCTGGGCGAAGGAC
CCGACCGGGACGGCGGCGCT

Product: cytochrome c oxidase subunit I type

Products: NA

Alternate protein names: Cytochrome aa3 subunit 1-beta; Cytochrome c oxidase polypeptide I-beta [H]

Number of amino acids: Translated: 568; Mature: 567

Protein sequence:

>568_residues
MTLLHESPAGPAGHAHEPVNHEKPAIANLLGYLRTTSHKDIAIMYFLTSFAFFVIAGILAIFIRGELARPGLQYFSNDQY
NQFFTMHGTLMLLMFATPLAFAFANYLVPLQIGSPDVAFPRLNALSYWLFLFGSLTVFAGFLSPGGAASFGWFAYAPLSN
QLYSPGVGSDLWVLGLTVQGLGTILGAVNFITTILCLRAPGMTMFRMPIFCWNLLVTSILVLVAFPVLAAALLALAADRR
FGAHIFDAENGGAMLWQHLFWFFGHPEVYIIALPFFGIVTEIIPVFSRKPLFGYKGLVFATISIGALSVAVWAHHMFVTG
AVLLPFFAFLSFLIAVPTGIKFFNWIGTMWRGQISFEAPMLFAVGFLVTFLFGGLTGVLLASPPIDFHVSDSYFVVGHFH
YVVAGLMFAAFAGVYFWFPKVTGRMLNEKLAKLHFWTLFLGFNATFLVFHWLGTQGMPRRFADYGPNDGFTTLNTVATAG
SFLMGLSTLPLLYNLWYSYRKGPIAAVDDPWGYSNSLEWATSCPPPRHNFRSLPRIRSERPAFDLHYPAVVGRADYHATP
ELGQGAAR

Sequences:

>Translated_568_residues
MTLLHESPAGPAGHAHEPVNHEKPAIANLLGYLRTTSHKDIAIMYFLTSFAFFVIAGILAIFIRGELARPGLQYFSNDQY
NQFFTMHGTLMLLMFATPLAFAFANYLVPLQIGSPDVAFPRLNALSYWLFLFGSLTVFAGFLSPGGAASFGWFAYAPLSN
QLYSPGVGSDLWVLGLTVQGLGTILGAVNFITTILCLRAPGMTMFRMPIFCWNLLVTSILVLVAFPVLAAALLALAADRR
FGAHIFDAENGGAMLWQHLFWFFGHPEVYIIALPFFGIVTEIIPVFSRKPLFGYKGLVFATISIGALSVAVWAHHMFVTG
AVLLPFFAFLSFLIAVPTGIKFFNWIGTMWRGQISFEAPMLFAVGFLVTFLFGGLTGVLLASPPIDFHVSDSYFVVGHFH
YVVAGLMFAAFAGVYFWFPKVTGRMLNEKLAKLHFWTLFLGFNATFLVFHWLGTQGMPRRFADYGPNDGFTTLNTVATAG
SFLMGLSTLPLLYNLWYSYRKGPIAAVDDPWGYSNSLEWATSCPPPRHNFRSLPRIRSERPAFDLHYPAVVGRADYHATP
ELGQGAAR
>Mature_567_residues
TLLHESPAGPAGHAHEPVNHEKPAIANLLGYLRTTSHKDIAIMYFLTSFAFFVIAGILAIFIRGELARPGLQYFSNDQYN
QFFTMHGTLMLLMFATPLAFAFANYLVPLQIGSPDVAFPRLNALSYWLFLFGSLTVFAGFLSPGGAASFGWFAYAPLSNQ
LYSPGVGSDLWVLGLTVQGLGTILGAVNFITTILCLRAPGMTMFRMPIFCWNLLVTSILVLVAFPVLAAALLALAADRRF
GAHIFDAENGGAMLWQHLFWFFGHPEVYIIALPFFGIVTEIIPVFSRKPLFGYKGLVFATISIGALSVAVWAHHMFVTGA
VLLPFFAFLSFLIAVPTGIKFFNWIGTMWRGQISFEAPMLFAVGFLVTFLFGGLTGVLLASPPIDFHVSDSYFVVGHFHY
VVAGLMFAAFAGVYFWFPKVTGRMLNEKLAKLHFWTLFLGFNATFLVFHWLGTQGMPRRFADYGPNDGFTTLNTVATAGS
FLMGLSTLPLLYNLWYSYRKGPIAAVDDPWGYSNSLEWATSCPPPRHNFRSLPRIRSERPAFDLHYPAVVGRADYHATPE
LGQGAAR

Specific function: Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome

COG id: COG0843

COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the heme-copper respiratory oxidase family [H]

Homologues:

Organism=Homo sapiens, GI251831109, Length=514, Percent_Identity=40.8560311284047, Blast_Score=367, Evalue=1e-101,
Organism=Escherichia coli, GI1786634, Length=521, Percent_Identity=43.1861804222649, Blast_Score=397, Evalue=1e-111,
Organism=Saccharomyces cerevisiae, GI6226519, Length=534, Percent_Identity=39.7003745318352, Blast_Score=364, Evalue=1e-101,
Organism=Saccharomyces cerevisiae, GI6226524, Length=321, Percent_Identity=40.4984423676012, Blast_Score=233, Evalue=7e-62,
Organism=Saccharomyces cerevisiae, GI6226523, Length=249, Percent_Identity=36.5461847389558, Blast_Score=148, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000883
- InterPro:   IPR014241 [H]

Pfam domain/function: PF00115 COX1 [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 62821; Mature: 62690

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS50855 COX1 ; PS00077 COX1_CUB ; PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLLHESPAGPAGHAHEPVNHEKPAIANLLGYLRTTSHKDIAIMYFLTSFAFFVIAGILA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
IFIRGELARPGLQYFSNDQYNQFFTMHGTLMLLMFATPLAFAFANYLVPLQIGSPDVAFP
HHHHCHHCCCCHHHHCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCC
RLNALSYWLFLFGSLTVFAGFLSPGGAASFGWFAYAPLSNQLYSPGVGSDLWVLGLTVQG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEHHHHHH
LGTILGAVNFITTILCLRAPGMTMFRMPIFCWNLLVTSILVLVAFPVLAAALLALAADRR
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FGAHIFDAENGGAMLWQHLFWFFGHPEVYIIALPFFGIVTEIIPVFSRKPLFGYKGLVFA
CCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCCCCCCCCHHHE
TISIGALSVAVWAHHMFVTGAVLLPFFAFLSFLIAVPTGIKFFNWIGTMWRGQISFEAPM
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHH
LFAVGFLVTFLFGGLTGVLLASPPIDFHVSDSYFVVGHFHYVVAGLMFAAFAGVYFWFPK
HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH
VTGRMLNEKLAKLHFWTLFLGFNATFLVFHWLGTQGMPRRFADYGPNDGFTTLNTVATAG
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHCCCCCCCCCHHHHHHHHH
SFLMGLSTLPLLYNLWYSYRKGPIAAVDDPWGYSNSLEWATSCPPPRHNFRSLPRIRSER
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCHHHCCC
PAFDLHYPAVVGRADYHATPELGQGAAR
CCCEEECCHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TLLHESPAGPAGHAHEPVNHEKPAIANLLGYLRTTSHKDIAIMYFLTSFAFFVIAGILA
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
IFIRGELARPGLQYFSNDQYNQFFTMHGTLMLLMFATPLAFAFANYLVPLQIGSPDVAFP
HHHHCHHCCCCHHHHCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCC
RLNALSYWLFLFGSLTVFAGFLSPGGAASFGWFAYAPLSNQLYSPGVGSDLWVLGLTVQG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEHHHHHH
LGTILGAVNFITTILCLRAPGMTMFRMPIFCWNLLVTSILVLVAFPVLAAALLALAADRR
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FGAHIFDAENGGAMLWQHLFWFFGHPEVYIIALPFFGIVTEIIPVFSRKPLFGYKGLVFA
CCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCCCCCCCCHHHE
TISIGALSVAVWAHHMFVTGAVLLPFFAFLSFLIAVPTGIKFFNWIGTMWRGQISFEAPM
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHH
LFAVGFLVTFLFGGLTGVLLASPPIDFHVSDSYFVVGHFHYVVAGLMFAAFAGVYFWFPK
HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH
VTGRMLNEKLAKLHFWTLFLGFNATFLVFHWLGTQGMPRRFADYGPNDGFTTLNTVATAG
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHCCCCCCCCCHHHHHHHHH
SFLMGLSTLPLLYNLWYSYRKGPIAAVDDPWGYSNSLEWATSCPPPRHNFRSLPRIRSER
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCHHHCCC
PAFDLHYPAVVGRADYHATPELGQGAAR
CCCEEECCHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA