| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158313597
Identifier: 158313597
GI number: 158313597
Start: 2111389
End: 2112120
Strand: Direct
Name: 158313597
Synonym: Franean1_1761
Alternate gene names: NA
Gene position: 2111389-2112120 (Clockwise)
Preceding gene: 158313596
Following gene: 158313599
Centisome position: 23.51
GC content: 77.19
Gene sequence:
>732_bases GTGGACGTCCCCGCTGTAGTCCGGCGCGTGGTCTCCCTGGTGCCGAGCCTGACCGAGTCCGTCGCGGCGACGGCGCCCGG CCTGCTGGTGGGTGCCACCGACTGGTGCTCCCGGCCGGCGGACCTGGCCGTGACGCGAGTGCGCGGCACGAAGAACCCGG ACATCGCGGCGATCGTGGCGCTGGCGCCGGACGTCGTCTGCGTAAACGCCGAGGAGAACCGGCAGCCGGACCTGGACGCG CTGCGGGCGGCCGGGCTCGCCGTCTGGGTGACGGCGCCGACCACCGTGCCCGCGGCCCTGCGCAGCCTCGACCGCCTGCT GCGCCTGGCCTGCCGGCTGCCCCGTCCCAGCTGGCTGGAGACGGCGGAGCGGGTCTGGGCGGCGCCGAGCGACGGCCCGC GCCGGCGCGCCGTCGTCCCGATCTGGCGCCGGCCGTGGATGGCGCTCGGCCGCGACACGTTCGCCGGTGACCTGCTGGCC CGGCTCGGGGTCGACAACGCCCTCGCCGGGGCGGACGAGCGCTACCCGCGGGTGGATCTCGACACGCTGCCCGCACATGA TCTCGTGGTGCTGCCCGACGAGCCGTACGCGTTCAGCCCGTCGGACGGGCCGGAGGCGTTCGCCGCGCCCGCGGTGTGCG TCTCCGGCCGGCTCCTCACCTGGTACGGGCCGTCGCTGGTCGAGGCCCGCGCGGAGCTGTCCACCGCGCTCGCCGCGGCC CCCCGGCCCTGA
Upstream 100 bases:
>100_bases CATCTCGGTCAACCGCCGCTACAAGGCGCACGCCGGCCTGCGCGTCACCGACGTCTGAGCGGGCGTCCACCCCGTGCCGG TCGACGATCTTGGTGAGCGG
Downstream 100 bases:
>100_bases CGGCGAACACCGGGACGGCGGGACGGCGGGACGAACGTCGCTGGACAGCGGGCGGCGGGACGAACGGCGGGGCAGTGGGC CCCGGGTGCGGGCCCGCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 243; Mature: 243
Protein sequence:
>243_residues MDVPAVVRRVVSLVPSLTESVAATAPGLLVGATDWCSRPADLAVTRVRGTKNPDIAAIVALAPDVVCVNAEENRQPDLDA LRAAGLAVWVTAPTTVPAALRSLDRLLRLACRLPRPSWLETAERVWAAPSDGPRRRAVVPIWRRPWMALGRDTFAGDLLA RLGVDNALAGADERYPRVDLDTLPAHDLVVLPDEPYAFSPSDGPEAFAAPAVCVSGRLLTWYGPSLVEARAELSTALAAA PRP
Sequences:
>Translated_243_residues MDVPAVVRRVVSLVPSLTESVAATAPGLLVGATDWCSRPADLAVTRVRGTKNPDIAAIVALAPDVVCVNAEENRQPDLDA LRAAGLAVWVTAPTTVPAALRSLDRLLRLACRLPRPSWLETAERVWAAPSDGPRRRAVVPIWRRPWMALGRDTFAGDLLA RLGVDNALAGADERYPRVDLDTLPAHDLVVLPDEPYAFSPSDGPEAFAAPAVCVSGRLLTWYGPSLVEARAELSTALAAA PRP >Mature_243_residues MDVPAVVRRVVSLVPSLTESVAATAPGLLVGATDWCSRPADLAVTRVRGTKNPDIAAIVALAPDVVCVNAEENRQPDLDA LRAAGLAVWVTAPTTVPAALRSLDRLLRLACRLPRPSWLETAERVWAAPSDGPRRRAVVPIWRRPWMALGRDTFAGDLLA RLGVDNALAGADERYPRVDLDTLPAHDLVVLPDEPYAFSPSDGPEAFAAPAVCVSGRLLTWYGPSLVEARAELSTALAAA PRP
Specific function: Unknown
COG id: COG0614
COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25913; Mature: 25913
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDVPAVVRRVVSLVPSLTESVAATAPGLLVGATDWCSRPADLAVTRVRGTKNPDIAAIVA CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHCCCHHHEEEEECCCCCCCCEEEEE LAPDVVCVNAEENRQPDLDALRAAGLAVWVTAPTTVPAALRSLDRLLRLACRLPRPSWLE ECCCEEEECCCCCCCCCHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHH TAERVWAAPSDGPRRRAVVPIWRRPWMALGRDTFAGDLLARLGVDNALAGADERYPRVDL HHHHHHCCCCCCCCCCEEEEHHCCCHHHHCCCHHHHHHHHHHCCCHHHCCCCCCCCCCCC DTLPAHDLVVLPDEPYAFSPSDGPEAFAAPAVCVSGRLLTWYGPSLVEARAELSTALAAA CCCCCCCEEEECCCCCEECCCCCCHHHHCCHHHHCCEEEEEECHHHHHHHHHHHHHHHCC PRP CCC >Mature Secondary Structure MDVPAVVRRVVSLVPSLTESVAATAPGLLVGATDWCSRPADLAVTRVRGTKNPDIAAIVA CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHCCCHHHEEEEECCCCCCCCEEEEE LAPDVVCVNAEENRQPDLDALRAAGLAVWVTAPTTVPAALRSLDRLLRLACRLPRPSWLE ECCCEEEECCCCCCCCCHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHH TAERVWAAPSDGPRRRAVVPIWRRPWMALGRDTFAGDLLARLGVDNALAGADERYPRVDL HHHHHHCCCCCCCCCCEEEEHHCCCHHHHCCCHHHHHHHHHHCCCHHHCCCCCCCCCCCC DTLPAHDLVVLPDEPYAFSPSDGPEAFAAPAVCVSGRLLTWYGPSLVEARAELSTALAAA CCCCCCCEEEECCCCCEECCCCCCHHHHCCHHHHCCEEEEEECHHHHHHHHHHHHHHHCC PRP CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA