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The map label for this gene is ydeS [H]

Identifier: 158313599

GI number: 158313599

Start: 2113531

End: 2114394

Strand: Direct

Name: ydeS [H]

Synonym: Franean1_1763

Alternate gene names: 158313599

Gene position: 2113531-2114394 (Clockwise)

Preceding gene: 158313597

Following gene: 158313600

Centisome position: 23.53

GC content: 74.88

Gene sequence:

>864_bases
GTGCCCGGAGTCACCAGGTGTCCGGGTCACCATGCCCGGGGCCACGGGTGCCCCGGGCCGCTGGGTGCCCAGGGGCACCG
GGCGGGCAGACCCGACTGGGACGGTCCACGGTCCACGGTCCGTGGGTGGCGTGACGAAGGCGCGGGTGGCGTAGGGCATG
CGGATGGACCAGCACGGCGACCGGCCTGGGCCGCGACCACCGTCGGGCCGGGCGGTCTGATGGCCGTCACACACGTGCGC
GGGGCGGCGCCCGGGGGCCGGCCGGCGCCCGCGCCCTCAGGGGTGGTGCGCCCGCCGGGGCGTCCGCGGGACACCCGCTG
CGACACCGCGATCATCCAGGCGACGCTGACCGAGCTGGCCACCAGCGGGTTCGGTGGGCTGTCGATGGAGGCGGTCGCGG
CCGCGGCCGGGGTGGGCAAGGGCACCGTCTACCGGCGCTGGCCGACGAAGGGCGCCCTGGTCGCCGACGCGCTGGCGACG
CTGGCGGAGCCCTACGAGCCGCACGACACCGGCTCGCTGCGTGACGACCTCGTCGCCGCGCTCAACTCGGTGCGCCGGCA
CAGCATCCAGACGCTGTCGGGGCGGATCATGCCGCGCCTGCTGGCGGAGAAGGAGACCCACCCGGAGTTGTTCGACACCT
ACCGCCAGCAGGTGATCGTCCCGTCGCGGGAGCGGGTGGCAAGCGTCCTGCGGCGCGGGGTGGCCGACGGTGAGCTCCTG
GCCGACCTGGACATCGACCTGGTGACGGACATGCTCGTCGGCCCGGTCTCCTACCGCCAGTACACCAGCGGGAGCCACGA
GGTCAGCGGCACCCGGATCGGCCAGATCGTGGACACCGTCCTGGGCGGCATCCGCCTCTGCTGA

Upstream 100 bases:

>100_bases
ATGCACAGGCGCGCTGCAATCGCAAACGGATGCGTGTGGCATCGCGCGGACGTACTGTCCGATCTTGTGAGCCGCGGGCG
GGGAAACGTGCCGGCACAGT

Downstream 100 bases:

>100_bases
CCGGTCCCCGCCCACCGACGGCAGCCGCCCGCCCACCGGGTGGTCGCCGGCCCGCCTGCCCGGTGGACGCCGGTCCGCGT
GCCCGGCGAGGGCCGGTGTG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MPGVTRCPGHHARGHGCPGPLGAQGHRAGRPDWDGPRSTVRGWRDEGAGGVGHADGPARRPAWAATTVGPGGLMAVTHVR
GAAPGGRPAPAPSGVVRPPGRPRDTRCDTAIIQATLTELATSGFGGLSMEAVAAAAGVGKGTVYRRWPTKGALVADALAT
LAEPYEPHDTGSLRDDLVAALNSVRRHSIQTLSGRIMPRLLAEKETHPELFDTYRQQVIVPSRERVASVLRRGVADGELL
ADLDIDLVTDMLVGPVSYRQYTSGSHEVSGTRIGQIVDTVLGGIRLC

Sequences:

>Translated_287_residues
MPGVTRCPGHHARGHGCPGPLGAQGHRAGRPDWDGPRSTVRGWRDEGAGGVGHADGPARRPAWAATTVGPGGLMAVTHVR
GAAPGGRPAPAPSGVVRPPGRPRDTRCDTAIIQATLTELATSGFGGLSMEAVAAAAGVGKGTVYRRWPTKGALVADALAT
LAEPYEPHDTGSLRDDLVAALNSVRRHSIQTLSGRIMPRLLAEKETHPELFDTYRQQVIVPSRERVASVLRRGVADGELL
ADLDIDLVTDMLVGPVSYRQYTSGSHEVSGTRIGQIVDTVLGGIRLC
>Mature_286_residues
PGVTRCPGHHARGHGCPGPLGAQGHRAGRPDWDGPRSTVRGWRDEGAGGVGHADGPARRPAWAATTVGPGGLMAVTHVRG
AAPGGRPAPAPSGVVRPPGRPRDTRCDTAIIQATLTELATSGFGGLSMEAVAAAAGVGKGTVYRRWPTKGALVADALATL
AEPYEPHDTGSLRDDLVAALNSVRRHSIQTLSGRIMPRLLAEKETHPELFDTYRQQVIVPSRERVASVLRRGVADGELLA
DLDIDLVTDMLVGPVSYRQYTSGSHEVSGTRIGQIVDTVLGGIRLC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 30074; Mature: 29943

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGVTRCPGHHARGHGCPGPLGAQGHRAGRPDWDGPRSTVRGWRDEGAGGVGHADGPARR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHCCCCCCCCCCCCCCC
PAWAATTVGPGGLMAVTHVRGAAPGGRPAPAPSGVVRPPGRPRDTRCDTAIIQATLTELA
CCCEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
TSGFGGLSMEAVAAAAGVGKGTVYRRWPTKGALVADALATLAEPYEPHDTGSLRDDLVAA
HCCCCCCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
LNSVRRHSIQTLSGRIMPRLLAEKETHPELFDTYRQQVIVPSRERVASVLRRGVADGELL
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEE
ADLDIDLVTDMLVGPVSYRQYTSGSHEVSGTRIGQIVDTVLGGIRLC
ECCCHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PGVTRCPGHHARGHGCPGPLGAQGHRAGRPDWDGPRSTVRGWRDEGAGGVGHADGPARR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHCCCCCCCCCCCCCCC
PAWAATTVGPGGLMAVTHVRGAAPGGRPAPAPSGVVRPPGRPRDTRCDTAIIQATLTELA
CCCEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
TSGFGGLSMEAVAAAAGVGKGTVYRRWPTKGALVADALATLAEPYEPHDTGSLRDDLVAA
HCCCCCCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
LNSVRRHSIQTLSGRIMPRLLAEKETHPELFDTYRQQVIVPSRERVASVLRRGVADGELL
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEE
ADLDIDLVTDMLVGPVSYRQYTSGSHEVSGTRIGQIVDTVLGGIRLC
ECCCHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]