| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158313214
Identifier: 158313214
GI number: 158313214
Start: 1649917
End: 1651539
Strand: Direct
Name: 158313214
Synonym: Franean1_1368
Alternate gene names: NA
Gene position: 1649917-1651539 (Clockwise)
Preceding gene: 158313213
Following gene: 158313215
Centisome position: 18.37
GC content: 68.27
Gene sequence:
>1623_bases ATGGCCGCGCGCCAGACTGTGACGGATGTGGACTCGTTCAGCAAGGAGCTGATGACGGCGAGTCCGGATCTGTTGGGCTC GATGGTGAAGGCGTTCGCGGAGGCGTTGATGGGCGCCGAGGTGGACGGGATCTGCAACGCGGAATATGGGGAGATTTCCC CCGAGCGGGTGAACCGGCGGAACGGGTATCGGGCGCGGGAGTGGGACACCCGTGCCGGGACGATCGAGCTGGCGGTGCCG AAGCTGCGGCAGGGATCGTATTTTCCGGAATGGCTGCTGACCCGGCGCCGGCGTGCCGAGCAGGCACTGATCTCGGTGGT CGCCACCTCCTATCTGCTGGGGGTGTCGACCAGGCGGGTCGACAAACTCGTTGAACAACTCGGGGTCGCGCATATCTCGA AATCGCAGGTATCGGTACTGGCGAAGCATCTCGACACCCAGGTCGAGGCGTTCCGGTCCCGGCCGTTGGACGCCGGTCCG TACCGGTTCGTCCAGGCGGACGCGTTGACGATGAAGGTCCGTGAGGACGGCCGTGTGATCAACGTGCACTGCCTGCTTGC CGTGGGGGTCAACGGTGACGGGCACCGGGAGATCCTCGGCCTCGACGTTGTGAGCAGCGAGGACGGTGCCGGCTGGCTGG CGTTCTTCCGCGGCCTGGTCGCCCGAGGCCTGTCCGGGGTGCGGCTGGTGACCTCCGATGCCCACCGGGGACTGGTCAAC GCGATCGGCTCCACACTGCCCGGTGCGTCGTGGCAGAGATGTCGGACTCATTGGGCCTGTGCAGAATTAACCCGTCGGCG TGGCGGCCTCGTCTGCCGGCAGGACAGACGCGAGGAGCTGTTCGGCGGAGCGGTACTTGACGGGTGCTCGTGGCAGGTGG ATGTCGTCTTCTTCGAGGATGGGGCGGACTTCGAGGAAGGCGGTGCCGATGGTGCGGTGACTGACGCCGAACAGCTCGGC CAGGACTCGGCCGGTGGCGACTTTGCGGTGGTGAAGGATCGCGGCCAGGACACGTTCCCCGCTGGTGATCTTCTGCGGGA AGACACCGCCGCGGGTTCCGGGGAGGCGCTGGCGGCCGCGTTGCTGGTGGCGGCGTCGTTCCACGGCGGCTGCTTGGCGG ACCGATACCTGGTCGATGAGTGCGGCGAGGTCGGCGCGGCTCATGCCGGTCAGCGCGGGGTCGGACAGCGTCCAGGGCAG CGACGGGCGGCCGTCGTCGTACTGTCCGGTGCGCGCGTAGGCAGTGACCTGCTCGGCGCAGGTGAACCGCAGGGTTGTCG GCGTGATCGTGATGTTCTGCTCGTGCAGGAGATGCCGGACGTCGGTGACCGCCTGACCGATCGTCCGCGCTGCGACTTCC AGCATGTCCGCCAGGAGCCGTTGAGAGCAGACCTGGCGCAGGTGAACGACGGTGATCAGGACCCGGTCGCGGGGCGAGAG CAGGGTTCTGCCGTGGGCGCCGGGGGCGTGGCGACGTGGTCCGCCGCGTCCCTGGTAGCGGCGCTGCTCCCGGCGGGCCG CCTGTTCCGGCGCCAGCTGTTCTGCGAGTGCGTCCAACTCGGTGATGCTCATGCCGGTCAGGCGCGGGTGGGCCAGCAGC GTCAGGGTCGCTGCCCGGTCTGA
Upstream 100 bases:
>100_bases GATCGTCGAGCGACTCGCCGGAGTGGCGGTCCGTGACGTAGAGCGACCACCGCGTGATCCTTTTCGAGAAACGTGCGAAG CAACTCGATGAGGAGACGCG
Downstream 100 bases:
>100_bases ACCGGTCGCGGCGTTAACGGCGGGTGGGGCCGTGCCGTCGGTGTGTGTGGGGTGGATTGTGTAGTTCCATGTTCTGTGCA TCGTGTGGTGTTCGATCGGT
Product: transposase mutator type
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 540; Mature: 539
Protein sequence:
>540_residues MAARQTVTDVDSFSKELMTASPDLLGSMVKAFAEALMGAEVDGICNAEYGEISPERVNRRNGYRAREWDTRAGTIELAVP KLRQGSYFPEWLLTRRRRAEQALISVVATSYLLGVSTRRVDKLVEQLGVAHISKSQVSVLAKHLDTQVEAFRSRPLDAGP YRFVQADALTMKVREDGRVINVHCLLAVGVNGDGHREILGLDVVSSEDGAGWLAFFRGLVARGLSGVRLVTSDAHRGLVN AIGSTLPGASWQRCRTHWACAELTRRRGGLVCRQDRREELFGGAVLDGCSWQVDVVFFEDGADFEEGGADGAVTDAEQLG QDSAGGDFAVVKDRGQDTFPAGDLLREDTAAGSGEALAAALLVAASFHGGCLADRYLVDECGEVGAAHAGQRGVGQRPGQ RRAAVVVLSGARVGSDLLGAGEPQGCRRDRDVLLVQEMPDVGDRLTDRPRCDFQHVRQEPLRADLAQVNDGDQDPVAGRE QGSAVGAGGVATWSAASLVAALLPAGRLFRRQLFCECVQLGDAHAGQARVGQQRQGRCPV
Sequences:
>Translated_540_residues MAARQTVTDVDSFSKELMTASPDLLGSMVKAFAEALMGAEVDGICNAEYGEISPERVNRRNGYRAREWDTRAGTIELAVP KLRQGSYFPEWLLTRRRRAEQALISVVATSYLLGVSTRRVDKLVEQLGVAHISKSQVSVLAKHLDTQVEAFRSRPLDAGP YRFVQADALTMKVREDGRVINVHCLLAVGVNGDGHREILGLDVVSSEDGAGWLAFFRGLVARGLSGVRLVTSDAHRGLVN AIGSTLPGASWQRCRTHWACAELTRRRGGLVCRQDRREELFGGAVLDGCSWQVDVVFFEDGADFEEGGADGAVTDAEQLG QDSAGGDFAVVKDRGQDTFPAGDLLREDTAAGSGEALAAALLVAASFHGGCLADRYLVDECGEVGAAHAGQRGVGQRPGQ RRAAVVVLSGARVGSDLLGAGEPQGCRRDRDVLLVQEMPDVGDRLTDRPRCDFQHVRQEPLRADLAQVNDGDQDPVAGRE QGSAVGAGGVATWSAASLVAALLPAGRLFRRQLFCECVQLGDAHAGQARVGQQRQGRCPV >Mature_539_residues AARQTVTDVDSFSKELMTASPDLLGSMVKAFAEALMGAEVDGICNAEYGEISPERVNRRNGYRAREWDTRAGTIELAVPK LRQGSYFPEWLLTRRRRAEQALISVVATSYLLGVSTRRVDKLVEQLGVAHISKSQVSVLAKHLDTQVEAFRSRPLDAGPY RFVQADALTMKVREDGRVINVHCLLAVGVNGDGHREILGLDVVSSEDGAGWLAFFRGLVARGLSGVRLVTSDAHRGLVNA IGSTLPGASWQRCRTHWACAELTRRRGGLVCRQDRREELFGGAVLDGCSWQVDVVFFEDGADFEEGGADGAVTDAEQLGQ DSAGGDFAVVKDRGQDTFPAGDLLREDTAAGSGEALAAALLVAASFHGGCLADRYLVDECGEVGAAHAGQRGVGQRPGQR RAAVVVLSGARVGSDLLGAGEPQGCRRDRDVLLVQEMPDVGDRLTDRPRCDFQHVRQEPLRADLAQVNDGDQDPVAGREQ GSAVGAGGVATWSAASLVAALLPAGRLFRRQLFCECVQLGDAHAGQARVGQQRQGRCPV
Specific function: Required for the transposition of the insertion element [H]
COG id: COG3328
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase mutator family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001207 [H]
Pfam domain/function: PF00872 Transposase_mut [H]
EC number: NA
Molecular weight: Translated: 57836; Mature: 57705
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: PS01007 TRANSPOSASE_MUTATOR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAARQTVTDVDSFSKELMTASPDLLGSMVKAFAEALMGAEVDGICNAEYGEISPERVNRR CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHC NGYRAREWDTRAGTIELAVPKLRQGSYFPEWLLTRRRRAEQALISVVATSYLLGVSTRRV CCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH DKLVEQLGVAHISKSQVSVLAKHLDTQVEAFRSRPLDAGPYRFVQADALTMKVREDGRVI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEEEEEECCCCEE NVHCLLAVGVNGDGHREILGLDVVSSEDGAGWLAFFRGLVARGLSGVRLVTSDAHRGLVN EEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHH AIGSTLPGASWQRCRTHWACAELTRRRGGLVCRQDRREELFGGAVLDGCSWQVDVVFFED HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHCCCEECCCCEEEEEEEEEC GADFEEGGADGAVTDAEQLGQDSAGGDFAVVKDRGQDTFPAGDLLREDTAAGSGEALAAA CCCCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCHHHHHH LLVAASFHGGCLADRYLVDECGEVGAAHAGQRGVGQRPGQRRAAVVVLSGARVGSDLLGA HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHCC GEPQGCRRDRDVLLVQEMPDVGDRLTDRPRCDFQHVRQEPLRADLAQVNDGDQDPVAGRE CCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC QGSAVGAGGVATWSAASLVAALLPAGRLFRRQLFCECVQLGDAHAGQARVGQQRQGRCPV CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCC >Mature Secondary Structure AARQTVTDVDSFSKELMTASPDLLGSMVKAFAEALMGAEVDGICNAEYGEISPERVNRR CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHC NGYRAREWDTRAGTIELAVPKLRQGSYFPEWLLTRRRRAEQALISVVATSYLLGVSTRRV CCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH DKLVEQLGVAHISKSQVSVLAKHLDTQVEAFRSRPLDAGPYRFVQADALTMKVREDGRVI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEEEEEECCCCEE NVHCLLAVGVNGDGHREILGLDVVSSEDGAGWLAFFRGLVARGLSGVRLVTSDAHRGLVN EEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHH AIGSTLPGASWQRCRTHWACAELTRRRGGLVCRQDRREELFGGAVLDGCSWQVDVVFFED HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHCCCEECCCCEEEEEEEEEC GADFEEGGADGAVTDAEQLGQDSAGGDFAVVKDRGQDTFPAGDLLREDTAAGSGEALAAA CCCCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCHHHHHH LLVAASFHGGCLADRYLVDECGEVGAAHAGQRGVGQRPGQRRAAVVVLSGARVGSDLLGA HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHCC GEPQGCRRDRDVLLVQEMPDVGDRLTDRPRCDFQHVRQEPLRADLAQVNDGDQDPVAGRE CCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC QGSAVGAGGVATWSAASLVAALLPAGRLFRRQLFCECVQLGDAHAGQARVGQQRQGRCPV CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1663885; 12788972 [H]