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The map label for this gene is ykfC [H]

Identifier: 158313215

GI number: 158313215

Start: 1652195

End: 1653658

Strand: Direct

Name: ykfC [H]

Synonym: Franean1_1369

Alternate gene names: 158313215

Gene position: 1652195-1653658 (Clockwise)

Preceding gene: 158313214

Following gene: 158313216

Centisome position: 18.39

GC content: 65.71

Gene sequence:

>1464_bases
ATGCACGAGCGTGGGAAGTCGGATCGTCTTGTAGTACCTGCGAACCCGCCGAACAAGGCCACAGCTGCGGAGGTGGGGGA
GGGAAGGGGACGAGCCAAGGGGAACACGGACAGTAAAACGCATCCCGGACACAGCGCCGGAACTGATGCGTCCAGTGCGC
TGGGCCGTGTGCGTGAAGTGGCACGACGGGACAGGAACGCGCGGTTCACCGCGCTGCTGCACCATGTCACGCTGGGTCGG
CTCCGGGAGGCGTATCGGGCGATCAGCCCGAAAGCGGCTGCTGGGGTGGACGGGGTGACGTGGACCGACTACGGGCAGGA
CCTGGAGGCCAATCTGCAGGATCTGCACGTGCGGGTGCAGTCGGGATGTTACCGGGCGACACCGTCGAGGCGGGCGTACA
TACCGAAGGCGGACGGGCGGCTTCGGCCGCTCGGGATCGCCTCGCTGGAGGACAAGATTGTTCAGCGGGCGGTTGTCGAG
GTGCTGGGCGCCGTCTACGAGGTGGACTTCCGGGGCTTCTCGTATGGGTTCCGGCCGGGGCGGGGTCCGCATGACGCGTT
GGACGCCCTCGCGGTCGGGATCTGGAGGAAGCGGGTGAACTGGGTGCTCGACGCGGACATCCGCGACTTTTTCGGCCAGA
TTGATCATTCCTGGCTGCGGAGGTTTCTGGAGCACCGGATCGCGGACAAGCGGGTCCTGCGGCTGATCGACAAGTGGTTG
GCCGCGGGGGTCGTCGAGGATGGGGAGTGGACAGCGTGTGAGGAAGGTTCGCCACAAGGGGCGTCAGTGTCCCCGCTGCT
GGCGAACGTCTACTTGCACTATGTCCTCGACCTGTGGGTCGACTGGTGGCGGCGTCGCCACGCGCGCGGAGATGTCATTG
TCGTGCGCTGGGCCGACGACTTCATCGTCGGGTTCGAATACGAGGAGGATGCGCGGCGGTTCCTGGACGAGCTGCGCGAA
CGGTTCGCGAAGTTCGGGTTGGAACTGCACCCGGATAAGACGCGGCTGATCGAGTTCGGGCGGTACGCCGCCCGGGATCG
GAAGCGGCGGGGTCTGGGCAAGCCGGAGACGTTCGACTTTCTGGGGTTCACGCACATCTGTGCGACATCCCGGAGGGGGA
CGTTCTGGCTCAAGCGCATCACGATCGCGAAACGCATGCGGGCGAAGCTGAAGGCGGTCAATGAGCAGCTGAAGCGTCGC
CGGCATACGCCCATCCCGGATCAGGGACGCTGGTTGGCGAGCGTGCTACGTGGGCATATGGCCTACTACGCCGTGCCCGG
CAACACCGACACGATGTCGGCCTTCCGTACCCAGGTGACACGGCACTGGTGCAAGGCGCTGCGGCGCCGCAGCCAACGTG
ACCGGATGAACTGGCAACGGATGGGGCGGATCGCGGCTCGATGGCTACCCCCAGTCCGAGTGATGCATCCCTTCCCGGAG
AGACGCTTCGCAGCCAGAACCTGA

Upstream 100 bases:

>100_bases
GTACGGAACCTCCATGCGCGAGAACCGGGAGATCCCACGCTCGCCCGCCCGGCCGATCACCGGGTGGGCCGTTCAGGGAA
CATAAGGTGGTACGCCTGAG

Downstream 100 bases:

>100_bases
GGCAGGAGCCCAGTGCGGTAGTCCCGCACGCTGGGATCTGTGCGGGGGGCCGCCCGCAAGGGCGGTCCCTACCGCGACTC
CATTTCGACGTGCCGGGCGG

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 487; Mature: 487

Protein sequence:

>487_residues
MHERGKSDRLVVPANPPNKATAAEVGEGRGRAKGNTDSKTHPGHSAGTDASSALGRVREVARRDRNARFTALLHHVTLGR
LREAYRAISPKAAAGVDGVTWTDYGQDLEANLQDLHVRVQSGCYRATPSRRAYIPKADGRLRPLGIASLEDKIVQRAVVE
VLGAVYEVDFRGFSYGFRPGRGPHDALDALAVGIWRKRVNWVLDADIRDFFGQIDHSWLRRFLEHRIADKRVLRLIDKWL
AAGVVEDGEWTACEEGSPQGASVSPLLANVYLHYVLDLWVDWWRRRHARGDVIVVRWADDFIVGFEYEEDARRFLDELRE
RFAKFGLELHPDKTRLIEFGRYAARDRKRRGLGKPETFDFLGFTHICATSRRGTFWLKRITIAKRMRAKLKAVNEQLKRR
RHTPIPDQGRWLASVLRGHMAYYAVPGNTDTMSAFRTQVTRHWCKALRRRSQRDRMNWQRMGRIAARWLPPVRVMHPFPE
RRFAART

Sequences:

>Translated_487_residues
MHERGKSDRLVVPANPPNKATAAEVGEGRGRAKGNTDSKTHPGHSAGTDASSALGRVREVARRDRNARFTALLHHVTLGR
LREAYRAISPKAAAGVDGVTWTDYGQDLEANLQDLHVRVQSGCYRATPSRRAYIPKADGRLRPLGIASLEDKIVQRAVVE
VLGAVYEVDFRGFSYGFRPGRGPHDALDALAVGIWRKRVNWVLDADIRDFFGQIDHSWLRRFLEHRIADKRVLRLIDKWL
AAGVVEDGEWTACEEGSPQGASVSPLLANVYLHYVLDLWVDWWRRRHARGDVIVVRWADDFIVGFEYEEDARRFLDELRE
RFAKFGLELHPDKTRLIEFGRYAARDRKRRGLGKPETFDFLGFTHICATSRRGTFWLKRITIAKRMRAKLKAVNEQLKRR
RHTPIPDQGRWLASVLRGHMAYYAVPGNTDTMSAFRTQVTRHWCKALRRRSQRDRMNWQRMGRIAARWLPPVRVMHPFPE
RRFAART
>Mature_487_residues
MHERGKSDRLVVPANPPNKATAAEVGEGRGRAKGNTDSKTHPGHSAGTDASSALGRVREVARRDRNARFTALLHHVTLGR
LREAYRAISPKAAAGVDGVTWTDYGQDLEANLQDLHVRVQSGCYRATPSRRAYIPKADGRLRPLGIASLEDKIVQRAVVE
VLGAVYEVDFRGFSYGFRPGRGPHDALDALAVGIWRKRVNWVLDADIRDFFGQIDHSWLRRFLEHRIADKRVLRLIDKWL
AAGVVEDGEWTACEEGSPQGASVSPLLANVYLHYVLDLWVDWWRRRHARGDVIVVRWADDFIVGFEYEEDARRFLDELRE
RFAKFGLELHPDKTRLIEFGRYAARDRKRRGLGKPETFDFLGFTHICATSRRGTFWLKRITIAKRMRAKLKAVNEQLKRR
RHTPIPDQGRWLASVLRGHMAYYAVPGNTDTMSAFRTQVTRHWCKALRRRSQRDRMNWQRMGRIAARWLPPVRVMHPFPE
RRFAART

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=211, Percent_Identity=30.3317535545024, Blast_Score=103, Evalue=8e-23,
Organism=Saccharomyces cerevisiae, GI6226520, Length=218, Percent_Identity=28.8990825688073, Blast_Score=97, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 56034; Mature: 56034

Theoretical pI: Translated: 11.16; Mature: 11.16

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHERGKSDRLVVPANPPNKATAAEVGEGRGRAKGNTDSKTHPGHSAGTDASSALGRVREV
CCCCCCCCEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
ARRDRNARFTALLHHVTLGRLREAYRAISPKAAAGVDGVTWTDYGQDLEANLQDLHVRVQ
HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCEECCCCCCHHCCHHHHHHHHH
SGCYRATPSRRAYIPKADGRLRPLGIASLEDKIVQRAVVEVLGAVYEVDFRGFSYGFRPG
CCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
RGPHDALDALAVGIWRKRVNWVLDADIRDFFGQIDHSWLRRFLEHRIADKRVLRLIDKWL
CCHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
AAGVVEDGEWTACEEGSPQGASVSPLLANVYLHYVLDLWVDWWRRRHARGDVIVVRWADD
HCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
FIVGFEYEEDARRFLDELRERFAKFGLELHPDKTRLIEFGRYAARDRKRRGLGKPETFDF
EEEECCCHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
LGFTHICATSRRGTFWLKRITIAKRMRAKLKAVNEQLKRRRHTPIPDQGRWLASVLRGHM
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
AYYAVPGNTDTMSAFRTQVTRHWCKALRRRSQRDRMNWQRMGRIAARWLPPVRVMHPFPE
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
RRFAART
CHHCCCC
>Mature Secondary Structure
MHERGKSDRLVVPANPPNKATAAEVGEGRGRAKGNTDSKTHPGHSAGTDASSALGRVREV
CCCCCCCCEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
ARRDRNARFTALLHHVTLGRLREAYRAISPKAAAGVDGVTWTDYGQDLEANLQDLHVRVQ
HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCEECCCCCCHHCCHHHHHHHHH
SGCYRATPSRRAYIPKADGRLRPLGIASLEDKIVQRAVVEVLGAVYEVDFRGFSYGFRPG
CCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
RGPHDALDALAVGIWRKRVNWVLDADIRDFFGQIDHSWLRRFLEHRIADKRVLRLIDKWL
CCHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
AAGVVEDGEWTACEEGSPQGASVSPLLANVYLHYVLDLWVDWWRRRHARGDVIVVRWADD
HCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
FIVGFEYEEDARRFLDELRERFAKFGLELHPDKTRLIEFGRYAARDRKRRGLGKPETFDF
EEEECCCHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
LGFTHICATSRRGTFWLKRITIAKRMRAKLKAVNEQLKRRRHTPIPDQGRWLASVLRGHM
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
AYYAVPGNTDTMSAFRTQVTRHWCKALRRRSQRDRMNWQRMGRIAARWLPPVRVMHPFPE
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
RRFAART
CHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]