| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is hflX [H]
Identifier: 158313083
GI number: 158313083
Start: 1472802
End: 1474313
Strand: Direct
Name: hflX [H]
Synonym: Franean1_1231
Alternate gene names: 158313083
Gene position: 1472802-1474313 (Clockwise)
Preceding gene: 158313082
Following gene: 158313085
Centisome position: 16.4
GC content: 72.16
Gene sequence:
>1512_bases ATGAGTCTTCGCGCTGACGCCGCTGTGGCGTCCACCCGGCATCTGAAACTGCACTCGGGCGAAAACGACGGCCACGACGG CCACGACGGTCGTGACGGTCGCGCCGGCACCGCGCTCGCCCTGGCCGAGGCCGACGGGTTCTCGTTCTTCGACGAGGAGG GCGACGGGCTCGACCTGGAGGACCGTGGCGCGCTGCGCCGTGTCCCGGGCCTCACCACCGAGCTCGAGGACGTCACCGAG GTCGAGTACCGCCAGCTCCGGCTGGAACAGGTCGTTCTGATCGGGGTGTGGACGTCGGGCTCGCAGGTCGAGGCCGAGGC GTCCATGGCGGAGCTGGCCGCGCTCGCCACCACCGCCGGCTCGGTCGTGCTCGACGCGCTCGTGCAGCGCCGGGACAGGC CCGACGCAGCGACCTTCGTGGGCTCCGGCAAGGCCAAGGAGCTCGCCGAGATCGTACTGGCGACCGGCGCGGACACGGTG ATCTGCGACGGCGAGCTGACCCCCGGCCAGCTGCGCCAGCTCGAGGAGGTCGTCAAGGTCAAGGTGATCGACCGGACGGC GCTGATCCTCGACATCTTCGCCCAGCACGCGACGTCGCGCGAGGGCAAGGCGCAGGTCGAGCTCGCCCAGCTGCAGTACA TGCTGCCGAGGCTGCGCGGCTGGGGTGAGTCGATGTCCCGGCAGGCCGCCAGCGGCGGCCGGGCGCCGATCGGTACCCGT GGTCCCGGTGAGACGAAGATCGAGACGGACCGTCGCCGGCTGCGCGCGCGCATCACCAAGCTGCGCCGAGAGCTCACCGG GATGGCCACCGTCCGGGCGACCAAGAGGTCGTCGCGCCGCCGCGGTGCCGTTCCCGCCGTCGCGATCGCCGGCTACACCA ACGCCGGCAAGTCGTCGCTGCTCAACCGACTGACCGGGGCGGGCGTACTGGTCGAGGACGCGCTGTTCGCGACCCTCGAC CCGACGGTGCGCCGGGCCACGCTGCCCGACGGCCGGATCTTCACCCTGGCCGACACGGTCGGCTTCGTGCGCCACCTGCC GCACCAGATCGTCGAGGCGTTCCGCTCGACGCTCGAGGAGGTGGTGGACGCCGACCTCGTCCTGCACGTCGTCGACGGTT CGGCCCCGGACCCGATGGGGCAGATCTCGGCTGTGCGCGAGGTGCTCGCCGAGATCGACGCGGCCGGGGTGCCCGAGCTC ATCGTGGTCAACAAGGTGGACGCGGTCGACCCGACCACGCTCGCCGTCCTGCGCCAGGCGGTGCCGGACGCCATCTTCGT CTCGGCGCGGTCCGGGGCGGGGCTGCAGGAGCTGGTGGAGGCGCTCTCGGCGCGGATACCGCACCCGGAGGTCGAGATGT CCCTGCTGGTGCCCTACACCCGGGGCGATCTCGTCTCCCGCATCCACCAGATCGGCGAGGTGCTCCGAGTTGAGCACACC GGCAAGGGCACCGAGGTCGCCGCGCGCGTGCCCGTGGGCCTGGCCGCCGAGCTGGAGCCGTTCCGCGCCTGA
Upstream 100 bases:
>100_bases CATCGGCCGGGCGAACCCGGCTGATGGGGCGAAAGAGTGCCGTCCCGGCCGGGGCGGACTGGAATGACGCGGTCACCGTG CCGCGTTGAGAACGGATGGT
Downstream 100 bases:
>100_bases CGGCCCTGCCTGAACACCAGCCCCGACGGAACACCGCGAGCTGAACACCGCACCGGTCAGACGCCTGGCGTCTGACCGGT GCCTGGCCTGCCCGGTGCGG
Product: small GTP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 503; Mature: 502
Protein sequence:
>503_residues MSLRADAAVASTRHLKLHSGENDGHDGHDGRDGRAGTALALAEADGFSFFDEEGDGLDLEDRGALRRVPGLTTELEDVTE VEYRQLRLEQVVLIGVWTSGSQVEAEASMAELAALATTAGSVVLDALVQRRDRPDAATFVGSGKAKELAEIVLATGADTV ICDGELTPGQLRQLEEVVKVKVIDRTALILDIFAQHATSREGKAQVELAQLQYMLPRLRGWGESMSRQAASGGRAPIGTR GPGETKIETDRRRLRARITKLRRELTGMATVRATKRSSRRRGAVPAVAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLD PTVRRATLPDGRIFTLADTVGFVRHLPHQIVEAFRSTLEEVVDADLVLHVVDGSAPDPMGQISAVREVLAEIDAAGVPEL IVVNKVDAVDPTTLAVLRQAVPDAIFVSARSGAGLQELVEALSARIPHPEVEMSLLVPYTRGDLVSRIHQIGEVLRVEHT GKGTEVAARVPVGLAAELEPFRA
Sequences:
>Translated_503_residues MSLRADAAVASTRHLKLHSGENDGHDGHDGRDGRAGTALALAEADGFSFFDEEGDGLDLEDRGALRRVPGLTTELEDVTE VEYRQLRLEQVVLIGVWTSGSQVEAEASMAELAALATTAGSVVLDALVQRRDRPDAATFVGSGKAKELAEIVLATGADTV ICDGELTPGQLRQLEEVVKVKVIDRTALILDIFAQHATSREGKAQVELAQLQYMLPRLRGWGESMSRQAASGGRAPIGTR GPGETKIETDRRRLRARITKLRRELTGMATVRATKRSSRRRGAVPAVAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLD PTVRRATLPDGRIFTLADTVGFVRHLPHQIVEAFRSTLEEVVDADLVLHVVDGSAPDPMGQISAVREVLAEIDAAGVPEL IVVNKVDAVDPTTLAVLRQAVPDAIFVSARSGAGLQELVEALSARIPHPEVEMSLLVPYTRGDLVSRIHQIGEVLRVEHT GKGTEVAARVPVGLAAELEPFRA >Mature_502_residues SLRADAAVASTRHLKLHSGENDGHDGHDGRDGRAGTALALAEADGFSFFDEEGDGLDLEDRGALRRVPGLTTELEDVTEV EYRQLRLEQVVLIGVWTSGSQVEAEASMAELAALATTAGSVVLDALVQRRDRPDAATFVGSGKAKELAEIVLATGADTVI CDGELTPGQLRQLEEVVKVKVIDRTALILDIFAQHATSREGKAQVELAQLQYMLPRLRGWGESMSRQAASGGRAPIGTRG PGETKIETDRRRLRARITKLRRELTGMATVRATKRSSRRRGAVPAVAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDP TVRRATLPDGRIFTLADTVGFVRHLPHQIVEAFRSTLEEVVDADLVLHVVDGSAPDPMGQISAVREVLAEIDAAGVPELI VVNKVDAVDPTTLAVLRQAVPDAIFVSARSGAGLQELVEALSARIPHPEVEMSLLVPYTRGDLVSRIHQIGEVLRVEHTG KGTEVAARVPVGLAAELEPFRA
Specific function: Unknown
COG id: COG2262
COG function: function code R; GTPases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI310124269, Length=213, Percent_Identity=38.0281690140845, Blast_Score=122, Evalue=8e-28, Organism=Homo sapiens, GI310124267, Length=213, Percent_Identity=38.0281690140845, Blast_Score=122, Evalue=8e-28, Organism=Homo sapiens, GI310124171, Length=213, Percent_Identity=38.0281690140845, Blast_Score=122, Evalue=8e-28, Organism=Homo sapiens, GI310124169, Length=213, Percent_Identity=38.0281690140845, Blast_Score=122, Evalue=8e-28, Organism=Homo sapiens, GI310133116, Length=220, Percent_Identity=37.2727272727273, Blast_Score=120, Evalue=4e-27, Organism=Homo sapiens, GI310133118, Length=235, Percent_Identity=36.5957446808511, Blast_Score=120, Evalue=4e-27, Organism=Escherichia coli, GI1790615, Length=386, Percent_Identity=45.3367875647668, Blast_Score=300, Evalue=2e-82, Organism=Caenorhabditis elegans, GI17561038, Length=288, Percent_Identity=31.9444444444444, Blast_Score=136, Evalue=3e-32, Organism=Drosophila melanogaster, GI24650079, Length=331, Percent_Identity=33.8368580060423, Blast_Score=128, Evalue=7e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR016496 - InterPro: IPR006073 - InterPro: IPR002917 [H]
Pfam domain/function: PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 53812; Mature: 53681
Theoretical pI: Translated: 5.41; Mature: 5.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLRADAAVASTRHLKLHSGENDGHDGHDGRDGRAGTALALAEADGFSFFDEEGDGLDLE CCCCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC DRGALRRVPGLTTELEDVTEVEYRQLRLEQVVLIGVWTSGSQVEAEASMAELAALATTAG CCCCHHHCCCCCCHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH SVVLDALVQRRDRPDAATFVGSGKAKELAEIVLATGADTVICDGELTPGQLRQLEEVVKV HHHHHHHHHHCCCCCHHHEECCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH KVIDRTALILDIFAQHATSREGKAQVELAQLQYMLPRLRGWGESMSRQAASGGRAPIGTR HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCC GPGETKIETDRRRLRARITKLRRELTGMATVRATKRSSRRRGAVPAVAIAGYTNAGKSSL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH LNRLTGAGVLVEDALFATLDPTVRRATLPDGRIFTLADTVGFVRHLPHQIVEAFRSTLEE HHHHHCCCHHHHHHHHHHCCCHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHH VVDADLVLHVVDGSAPDPMGQISAVREVLAEIDAAGVPELIVVNKVDAVDPTTLAVLRQA HHCHHEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHH VPDAIFVSARSGAGLQELVEALSARIPHPEVEMSLLVPYTRGDLVSRIHQIGEVLRVEHT CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC GKGTEVAARVPVGLAAELEPFRA CCCCEEEEECCCCCCCCCCCCCC >Mature Secondary Structure SLRADAAVASTRHLKLHSGENDGHDGHDGRDGRAGTALALAEADGFSFFDEEGDGLDLE CCCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC DRGALRRVPGLTTELEDVTEVEYRQLRLEQVVLIGVWTSGSQVEAEASMAELAALATTAG CCCCHHHCCCCCCHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH SVVLDALVQRRDRPDAATFVGSGKAKELAEIVLATGADTVICDGELTPGQLRQLEEVVKV HHHHHHHHHHCCCCCHHHEECCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH KVIDRTALILDIFAQHATSREGKAQVELAQLQYMLPRLRGWGESMSRQAASGGRAPIGTR HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCC GPGETKIETDRRRLRARITKLRRELTGMATVRATKRSSRRRGAVPAVAIAGYTNAGKSSL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH LNRLTGAGVLVEDALFATLDPTVRRATLPDGRIFTLADTVGFVRHLPHQIVEAFRSTLEE HHHHHCCCHHHHHHHHHHCCCHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHH VVDADLVLHVVDGSAPDPMGQISAVREVLAEIDAAGVPELIVVNKVDAVDPTTLAVLRQA HHCHHEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHH VPDAIFVSARSGAGLQELVEALSARIPHPEVEMSLLVPYTRGDLVSRIHQIGEVLRVEHT CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC GKGTEVAARVPVGLAAELEPFRA CCCCEEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8248183; 7610040; 9278503; 2020545; 3040675 [H]