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The map label for this gene is dapE [H]

Identifier: 158312728

GI number: 158312728

Start: 1019560

End: 1020690

Strand: Direct

Name: dapE [H]

Synonym: Franean1_0874

Alternate gene names: 158312728

Gene position: 1019560-1020690 (Clockwise)

Preceding gene: 158312727

Following gene: 158312729

Centisome position: 11.35

GC content: 75.95

Gene sequence:

>1131_bases
ATGGGCCTCGATCTGGCGCTGCCCGTCGGTGATCTGACGCGTGTCCTCGTGGACGTGCCGTCGGTCAGCGGCGACGAGGG
CACGCTCGCGACGGCCGTCGAGGAGGCGCTGCGCTCCCTCGGCGGCCTGGAGATCCTGCGGGACGGCGACGCGGTGCTCG
CGCGGACCGGCCACGGCCTGCCCGCGCGGGTGCTGCTGGCCGGTCACCTCGACACGGTGCCCGTCGCCGACAACCTCCCG
GCCCGCCTCGACGGCTCCCGCCTGTACGGCTGCGGGACGTCCGACATGAAGGCCGGGGTGGCCGTGATGCTCCGCCTGGC
GGCGCTCCTCGGCACCCCGGCGTCGGGGTCGGCGCCCGAGTCGAGGCCGGGGCCGGTCTCGGGGGCGGGGGCGGTCGCGC
GGCACGACGTCACCTGGGTCTTCTACGACAACGAGGAGGTCGCGGCCGCCCGTAACGGGCTGCGCCGGCTCGCCGAGCGG
CACCGCGACTGGCTCCAGGCGGATCTGGCGATCCTCATGGAGCCCACCTCCGGCGAGATCGAGGCGGGCTGCCAGGGCAC
GCTGCGGGTCGTGGCCACGGTGCCGGGCCGCCGCGCGCACTCGGCCCGCTCCTGGCTCGGGGAGAACGCCATCCACCAGG
CCGGGGAGCTGCTGAGCCGGCTGGCGCGGTACCGGCCGCGGTCCGTCACGCTGGACGGCTGCACCTACCGGGAGGGCCTC
TCGGCGGTCCGGATCGACGGCGGCGTGGCCGGCAACGTGATCCCGGACAGCTGCCGGGTCACGGTGAACTTCCGCTTCGC
CCCCGACCGGGACCCGAAGGCCGCGCTGGCCCACGTGGCCGAGGTGCTGGACGGCTACGACCTGGTGCTCGACGACAGCG
CCGGCGGGGCCCCGCCCGGGCTGTCCGCCCCGGCCGCGGCGGCCTTCGTGGCGGCCACCGGGCGGGCCCCGGTGGCCAAG
TACGGGTGGACCGACGTGGCGCGGTTCGCCGAGCTGGGCATACCGGCGCTCAACTACGGTCCCGGCGACCCGAACCTGGC
GCACACCCGCGACGAGTACGTCGAGGTGGCGGTGATCGAGGAGACGGAGCGCGTGCTCAGCTCCTACCTGGTCGGCCGCG
GCACGCCCTGA

Upstream 100 bases:

>100_bases
CCTGCATCCTCGTCCTGCGCACTCTGGACGAGGGCGAGATCCACGACAAGCTCGCGCTGAACGACATCCTGCGTGAGCAC
GGCGTGGCCTCCTGACCGTC

Downstream 100 bases:

>100_bases
GCTTCGGGCGTCCGGGCGGATCTGCGTATGGTGCGGACGTGACTCGGCCCGCCCACCCTGATCCGCCGGGCGGCGGATCG
ACGTCCCAGCCGATCGTTCC

Product: succinyl-diaminopimelate desuccinylase

Products: NA

Alternate protein names: SDAP desuccinylase [H]

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MGLDLALPVGDLTRVLVDVPSVSGDEGTLATAVEEALRSLGGLEILRDGDAVLARTGHGLPARVLLAGHLDTVPVADNLP
ARLDGSRLYGCGTSDMKAGVAVMLRLAALLGTPASGSAPESRPGPVSGAGAVARHDVTWVFYDNEEVAAARNGLRRLAER
HRDWLQADLAILMEPTSGEIEAGCQGTLRVVATVPGRRAHSARSWLGENAIHQAGELLSRLARYRPRSVTLDGCTYREGL
SAVRIDGGVAGNVIPDSCRVTVNFRFAPDRDPKAALAHVAEVLDGYDLVLDDSAGGAPPGLSAPAAAAFVAATGRAPVAK
YGWTDVARFAELGIPALNYGPGDPNLAHTRDEYVEVAVIEETERVLSSYLVGRGTP

Sequences:

>Translated_376_residues
MGLDLALPVGDLTRVLVDVPSVSGDEGTLATAVEEALRSLGGLEILRDGDAVLARTGHGLPARVLLAGHLDTVPVADNLP
ARLDGSRLYGCGTSDMKAGVAVMLRLAALLGTPASGSAPESRPGPVSGAGAVARHDVTWVFYDNEEVAAARNGLRRLAER
HRDWLQADLAILMEPTSGEIEAGCQGTLRVVATVPGRRAHSARSWLGENAIHQAGELLSRLARYRPRSVTLDGCTYREGL
SAVRIDGGVAGNVIPDSCRVTVNFRFAPDRDPKAALAHVAEVLDGYDLVLDDSAGGAPPGLSAPAAAAFVAATGRAPVAK
YGWTDVARFAELGIPALNYGPGDPNLAHTRDEYVEVAVIEETERVLSSYLVGRGTP
>Mature_375_residues
GLDLALPVGDLTRVLVDVPSVSGDEGTLATAVEEALRSLGGLEILRDGDAVLARTGHGLPARVLLAGHLDTVPVADNLPA
RLDGSRLYGCGTSDMKAGVAVMLRLAALLGTPASGSAPESRPGPVSGAGAVARHDVTWVFYDNEEVAAARNGLRRLAERH
RDWLQADLAILMEPTSGEIEAGCQGTLRVVATVPGRRAHSARSWLGENAIHQAGELLSRLARYRPRSVTLDGCTYREGLS
AVRIDGGVAGNVIPDSCRVTVNFRFAPDRDPKAALAHVAEVLDGYDLVLDDSAGGAPPGLSAPAAAAFVAATGRAPVAKY
GWTDVARFAELGIPALNYGPGDPNLAHTRDEYVEVAVIEETERVLSSYLVGRGTP

Specific function: Displays A Broad Specificity And Can Also Deacylate Substrates Such As Acetylarginine, Acetylhistidine Or Acetylglutamate Semialdehyde. [C]

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001261
- InterPro:   IPR002933
- InterPro:   IPR011650
- InterPro:   IPR010174 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: =3.5.1.18 [H]

Molecular weight: Translated: 39296; Mature: 39165

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: PS00758 ARGE_DAPE_CPG2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLDLALPVGDLTRVLVDVPSVSGDEGTLATAVEEALRSLGGLEILRDGDAVLARTGHGL
CCCEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCC
PARVLLAGHLDTVPVADNLPARLDGSRLYGCGTSDMKAGVAVMLRLAALLGTPASGSAPE
CEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
SRPGPVSGAGAVARHDVTWVFYDNEEVAAARNGLRRLAERHRDWLQADLAILMEPTSGEI
CCCCCCCCCCCEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCC
EAGCQGTLRVVATVPGRRAHSARSWLGENAIHQAGELLSRLARYRPRSVTLDGCTYREGL
CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCC
SAVRIDGGVAGNVIPDSCRVTVNFRFAPDRDPKAALAHVAEVLDGYDLVLDDSAGGAPPG
CEEEECCCEECCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCC
LSAPAAAAFVAATGRAPVAKYGWTDVARFAELGIPALNYGPGDPNLAHTRDEYVEVAVIE
CCCCHHHHHHEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHEEEEEEH
ETERVLSSYLVGRGTP
HHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GLDLALPVGDLTRVLVDVPSVSGDEGTLATAVEEALRSLGGLEILRDGDAVLARTGHGL
CCEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCC
PARVLLAGHLDTVPVADNLPARLDGSRLYGCGTSDMKAGVAVMLRLAALLGTPASGSAPE
CEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
SRPGPVSGAGAVARHDVTWVFYDNEEVAAARNGLRRLAERHRDWLQADLAILMEPTSGEI
CCCCCCCCCCCEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCC
EAGCQGTLRVVATVPGRRAHSARSWLGENAIHQAGELLSRLARYRPRSVTLDGCTYREGL
CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCC
SAVRIDGGVAGNVIPDSCRVTVNFRFAPDRDPKAALAHVAEVLDGYDLVLDDSAGGAPPG
CEEEECCCEECCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCC
LSAPAAAAFVAATGRAPVAKYGWTDVARFAELGIPALNYGPGDPNLAHTRDEYVEVAVIE
CCCCHHHHHHEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHEEEEEEH
ETERVLSSYLVGRGTP
HHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7881553; 12948626; 7592354 [H]