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The map label for this gene is dapD [H]

Identifier: 158312727

GI number: 158312727

Start: 1018673

End: 1019554

Strand: Direct

Name: dapD [H]

Synonym: Franean1_0873

Alternate gene names: 158312727

Gene position: 1018673-1019554 (Clockwise)

Preceding gene: 158312726

Following gene: 158312728

Centisome position: 11.34

GC content: 73.02

Gene sequence:

>882_bases
GTGAGCAGCGTGAGCGGAGCAAACCCCAGCCCATCGGACGCGGGTGTCACGTCCGGCGAAGTCGTGTCTCCCCTGGACCG
GGCCATCGACGACCTGTGGGAGCGTCGCGGCGAGCTGACGCCGGAGGACACCCAGGCCCGCAAGGTCATCGTGGGCGCGG
TCGACGCGATCGACGCCGGTGAGGCCCGGGTCGCCCAGGTCGCCGCGGACGGCAGCGTCGTCGTCGACGAGCGGGCCAAG
CGGGCGATCCTGCTGTCGTTCAAGGTCCTGCCGATGGTCGAGTCGGCCGCCGGGGACTTCCACTTCCACGACCGCGTCCC
GCTCAAGACCCGGTTCGACGGCGTGCGGGTGGTGCCGGGCGCGATCGTCCGCTGGGGCGCCCACGTCGAGCCCGGTGCCG
TGCTCATGCCCAGCTACACCAACATCGGCGGCTACGTCGGTGCCGGGACCCTCGTCGACACCTGGGCGACGGTCGGCTCG
TGCGCCCAGGTCGGGCGCAATGTCCACCTCTCCGGAGGGGTCGGCCTGGGCGGCGTGCTCGAGCCGCCGAGCGCGGTGCC
GGTGGTCGTCGAGGACGACGCGTTCGTCGGCAGCCGCTGCATGGTGGTCGAGGGCGCCCGGGTCCGGCGCGGCGCGAAGC
TCGGCGCCGGGGCGATCCTGACGGCGTCCACCCACGTCTTCGACGCGGTGACGGGGGAGGAGTACCCGCGCGGGGAGATC
CCGGAGCGCGCGGTGGCCGTCGGCTCCAGCCGGGTCCGCTCCTTCCCGGCCGGCGAGTTCGCCATGCCCTGCATCCTCGT
CCTGCGCACTCTGGACGAGGGCGAGATCCACGACAAGCTCGCGCTGAACGACATCCTGCGTGAGCACGGCGTGGCCTCCT
GA

Upstream 100 bases:

>100_bases
AGGGAGACCGGAACACGCCGGGCTGGGGCTCGGAGCCCGACGTCCGCTGACCGCCGCGGCCGCGAGCGCCGCTCACCCCG
AGACCCGTAGGGTCTTATCC

Downstream 100 bases:

>100_bases
CCGTCATGGGCCTCGATCTGGCGCTGCCCGTCGGTGATCTGACGCGTGTCCTCGTGGACGTGCCGTCGGTCAGCGGCGAC
GAGGGCACGCTCGCGACGGC

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase [H]

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MSSVSGANPSPSDAGVTSGEVVSPLDRAIDDLWERRGELTPEDTQARKVIVGAVDAIDAGEARVAQVAADGSVVVDERAK
RAILLSFKVLPMVESAAGDFHFHDRVPLKTRFDGVRVVPGAIVRWGAHVEPGAVLMPSYTNIGGYVGAGTLVDTWATVGS
CAQVGRNVHLSGGVGLGGVLEPPSAVPVVVEDDAFVGSRCMVVEGARVRRGAKLGAGAILTASTHVFDAVTGEEYPRGEI
PERAVAVGSSRVRSFPAGEFAMPCILVLRTLDEGEIHDKLALNDILREHGVAS

Sequences:

>Translated_293_residues
MSSVSGANPSPSDAGVTSGEVVSPLDRAIDDLWERRGELTPEDTQARKVIVGAVDAIDAGEARVAQVAADGSVVVDERAK
RAILLSFKVLPMVESAAGDFHFHDRVPLKTRFDGVRVVPGAIVRWGAHVEPGAVLMPSYTNIGGYVGAGTLVDTWATVGS
CAQVGRNVHLSGGVGLGGVLEPPSAVPVVVEDDAFVGSRCMVVEGARVRRGAKLGAGAILTASTHVFDAVTGEEYPRGEI
PERAVAVGSSRVRSFPAGEFAMPCILVLRTLDEGEIHDKLALNDILREHGVAS
>Mature_292_residues
SSVSGANPSPSDAGVTSGEVVSPLDRAIDDLWERRGELTPEDTQARKVIVGAVDAIDAGEARVAQVAADGSVVVDERAKR
AILLSFKVLPMVESAAGDFHFHDRVPLKTRFDGVRVVPGAIVRWGAHVEPGAVLMPSYTNIGGYVGAGTLVDTWATVGSC
AQVGRNVHLSGGVGLGGVLEPPSAVPVVVEDDAFVGSRCMVVEGARVRRGAKLGAGAILTASTHVFDAVTGEEYPRGEIP
ERAVAVGSSRVRSFPAGEFAMPCILVLRTLDEGEIHDKLALNDILREHGVAS

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=278, Percent_Identity=41.0071942446043, Blast_Score=187, Evalue=8e-49,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005664
- InterPro:   IPR023180
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: =2.3.1.117 [H]

Molecular weight: Translated: 30562; Mature: 30431

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS00101 HEXAPEP_TRANSFERASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSVSGANPSPSDAGVTSGEVVSPLDRAIDDLWERRGELTPEDTQARKVIVGAVDAIDAG
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEEEECCCCCCC
EARVAQVAADGSVVVDERAKRAILLSFKVLPMVESAAGDFHFHDRVPLKTRFDGVRVVPG
CHHEEEEECCCCEEECCCCCEEEEEEEEHHHHHHHCCCCCEECCCCCCCCCCCCEEECCH
AIVRWGAHVEPGAVLMPSYTNIGGYVGAGTLVDTWATVGSCAQVGRNVHLSGGVGLGGVL
HHHCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCC
EPPSAVPVVVEDDAFVGSRCMVVEGARVRRGAKLGAGAILTASTHVFDAVTGEEYPRGEI
CCCCCCEEEEECCCCCCCEEEEEECHHHHCCCCCCCCEEEEECHHHHCCCCCCCCCCCCC
PERAVAVGSSRVRSFPAGEFAMPCILVLRTLDEGEIHDKLALNDILREHGVAS
CHHHHHHCHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SSVSGANPSPSDAGVTSGEVVSPLDRAIDDLWERRGELTPEDTQARKVIVGAVDAIDAG
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEEEECCCCCCC
EARVAQVAADGSVVVDERAKRAILLSFKVLPMVESAAGDFHFHDRVPLKTRFDGVRVVPG
CHHEEEEECCCCEEECCCCCEEEEEEEEHHHHHHHCCCCCEECCCCCCCCCCCCEEECCH
AIVRWGAHVEPGAVLMPSYTNIGGYVGAGTLVDTWATVGSCAQVGRNVHLSGGVGLGGVL
HHHCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCC
EPPSAVPVVVEDDAFVGSRCMVVEGARVRRGAKLGAGAILTASTHVFDAVTGEEYPRGEI
CCCCCCEEEEECCCCCCCEEEEEECHHHHCCCCCCCCEEEEECHHHHCCCCCCCCCCCCC
PERAVAVGSSRVRSFPAGEFAMPCILVLRTLDEGEIHDKLALNDILREHGVAS
CHHHHHHCHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA