Click here to switch to the map view.

The map label for this gene is ygdH [C]

Identifier: 158312729

GI number: 158312729

Start: 1020729

End: 1021727

Strand: Direct

Name: ygdH [C]

Synonym: Franean1_0875

Alternate gene names: 158312729

Gene position: 1020729-1021727 (Clockwise)

Preceding gene: 158312728

Following gene: 158312730

Centisome position: 11.36

GC content: 74.87

Gene sequence:

>999_bases
GTGACTCGGCCCGCCCACCCTGATCCGCCGGGCGGCGGATCGACGTCCCAGCCGATCGTTCCGACGGCGGCCGCGCGCCC
AGCCGGTGATGGTCCGGCGGACGTCCCCCCGCCCGTTCCCGCCGTCGCGCCCGGGCCCGCGGTTGCTCCCGCGGCCGCGG
TGTCCAGGCGTACCCGGCGGGGTGGCGGGCCGCCGCCCGAGCAGCGCCGCGGCCCGGTCACGGCGCGGCGCGGGCAGGTG
GAGCACTCCACCACCGACCAACGCCTGCTCGACACCCGCAGCCCGGCCTCGTTCGTCCACAGTGACCCGTGGCGCGTCCT
GCGCATTCAGAGCGAGTTCGTCGAGGGCTTCGGGCTGCTGGCGGATCTGCCCCCAGCCGTCACGGTCTTCGGGTCGGCCC
GGGTCGGCCGGGACGAACCCGAGTACGAGCTGGGACGCCGGCTCGGCGCCGCGCTGGCCGACGCCGGCTACGCGGTGATC
ACCGGCGGCGGGCCGGGCGCGATGGAGGCGGTCAACCGGGGGGCGCAGGAGGCCGGCGGGCTCTCGGTCGGCCTCGGCAT
CGAGCTGCCCTTCGAGCAGGATCTCAACGACTGGGTCGATCTGGGCGTCAGCTTCCGGTACTTCTTCGTCCGCAAGACGA
TGTTCGTGAAGTACGCCGAGGCCTTCGTCATCATGCCGGGCGGGTTCGGCACCCTCGACGAGCTCTTCGAGGCCCTCACC
CTGCTGCAGACGGGCAAGGTGACCCGGTTCCCGGTGGTGCTCATGGGCACGGCCTACTGGTCGGGCCTGCTGGAGTGGCT
GCGCTCGACCGTCCTCGGCTCCGCCCGGATCAAGCCGGGCGACCTCGACCTGGTGACCATGACCGACGACGTCGACGAGG
CCGTGCGCCTGATCCTCGAGGGGACCGGCCGTGCCGGCCCGCCCGCCGCGGCCACCTCCGGCGACGAGACCGCCAGCGAG
GTCGGCGGGGCCGCCGCGGCCGGTGGGGCGCCCTCGTGA

Upstream 100 bases:

>100_bases
CGGTGATCGAGGAGACGGAGCGCGTGCTCAGCTCCTACCTGGTCGGCCGCGGCACGCCCTGAGCTTCGGGCGTCCGGGCG
GATCTGCGTATGGTGCGGAC

Downstream 100 bases:

>100_bases
ACGTCTGTGTGTACTGCGCGTCCTCGGACCACATCGATCCCGCGTTCGTGCTGCTGGCCGCCGAGGTCGGCACGGAGCTC
GCCCGGCGCGGGCACGTGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MTRPAHPDPPGGGSTSQPIVPTAAARPAGDGPADVPPPVPAVAPGPAVAPAAAVSRRTRRGGGPPPEQRRGPVTARRGQV
EHSTTDQRLLDTRSPASFVHSDPWRVLRIQSEFVEGFGLLADLPPAVTVFGSARVGRDEPEYELGRRLGAALADAGYAVI
TGGGPGAMEAVNRGAQEAGGLSVGLGIELPFEQDLNDWVDLGVSFRYFFVRKTMFVKYAEAFVIMPGGFGTLDELFEALT
LLQTGKVTRFPVVLMGTAYWSGLLEWLRSTVLGSARIKPGDLDLVTMTDDVDEAVRLILEGTGRAGPPAAATSGDETASE
VGGAAAAGGAPS

Sequences:

>Translated_332_residues
MTRPAHPDPPGGGSTSQPIVPTAAARPAGDGPADVPPPVPAVAPGPAVAPAAAVSRRTRRGGGPPPEQRRGPVTARRGQV
EHSTTDQRLLDTRSPASFVHSDPWRVLRIQSEFVEGFGLLADLPPAVTVFGSARVGRDEPEYELGRRLGAALADAGYAVI
TGGGPGAMEAVNRGAQEAGGLSVGLGIELPFEQDLNDWVDLGVSFRYFFVRKTMFVKYAEAFVIMPGGFGTLDELFEALT
LLQTGKVTRFPVVLMGTAYWSGLLEWLRSTVLGSARIKPGDLDLVTMTDDVDEAVRLILEGTGRAGPPAAATSGDETASE
VGGAAAAGGAPS
>Mature_331_residues
TRPAHPDPPGGGSTSQPIVPTAAARPAGDGPADVPPPVPAVAPGPAVAPAAAVSRRTRRGGGPPPEQRRGPVTARRGQVE
HSTTDQRLLDTRSPASFVHSDPWRVLRIQSEFVEGFGLLADLPPAVTVFGSARVGRDEPEYELGRRLGAALADAGYAVIT
GGGPGAMEAVNRGAQEAGGLSVGLGIELPFEQDLNDWVDLGVSFRYFFVRKTMFVKYAEAFVIMPGGFGTLDELFEALTL
LQTGKVTRFPVVLMGTAYWSGLLEWLRSTVLGSARIKPGDLDLVTMTDDVDEAVRLILEGTGRAGPPAAATSGDETASEV
GGAAAAGGAPS

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005268
- InterPro:   IPR005269 [H]

Pfam domain/function: PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 34471; Mature: 34340

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRPAHPDPPGGGSTSQPIVPTAAARPAGDGPADVPPPVPAVAPGPAVAPAAAVSRRTRR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
GGGPPPEQRRGPVTARRGQVEHSTTDQRLLDTRSPASFVHSDPWRVLRIQSEFVEGFGLL
CCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHCCCCCEEEEEHHHHHHHHHHH
ADLPPAVTVFGSARVGRDEPEYELGRRLGAALADAGYAVITGGGPGAMEAVNRGAQEAGG
HCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCHHHHCC
LSVGLGIELPFEQDLNDWVDLGVSFRYFFVRKTMFVKYAEAFVIMPGGFGTLDELFEALT
EEEECEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCEEEECCCCCCCHHHHHHHHH
LLQTGKVTRFPVVLMGTAYWSGLLEWLRSTVLGSARIKPGDLDLVTMTDDVDEAVRLILE
HHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHH
GTGRAGPPAAATSGDETASEVGGAAAAGGAPS
CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TRPAHPDPPGGGSTSQPIVPTAAARPAGDGPADVPPPVPAVAPGPAVAPAAAVSRRTRR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
GGGPPPEQRRGPVTARRGQVEHSTTDQRLLDTRSPASFVHSDPWRVLRIQSEFVEGFGLL
CCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHCCCCCEEEEEHHHHHHHHHHH
ADLPPAVTVFGSARVGRDEPEYELGRRLGAALADAGYAVITGGGPGAMEAVNRGAQEAGG
HCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCHHHHCC
LSVGLGIELPFEQDLNDWVDLGVSFRYFFVRKTMFVKYAEAFVIMPGGFGTLDELFEALT
EEEECEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCEEEECCCCCCCHHHHHHHHH
LLQTGKVTRFPVVLMGTAYWSGLLEWLRSTVLGSARIKPGDLDLVTMTDDVDEAVRLILE
HHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHH
GTGRAGPPAAATSGDETASEVGGAAAAGGAPS
CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]