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The map label for this gene is ydiT [H]

Identifier: 157963853

GI number: 157963853

Start: 4909375

End: 4909662

Strand: Direct

Name: ydiT [H]

Synonym: Spea_4042

Alternate gene names: 157963853

Gene position: 4909375-4909662 (Clockwise)

Preceding gene: 157963852

Following gene: 157963854

Centisome position: 94.87

GC content: 40.28

Gene sequence:

>288_bases
ATGAGTGAAGTAGTTAACGTCGATGTCAAATTAGGCGTCAATAAGTTTCATGTCGATGAGGGGCATCCTCATATTATCTT
AAAAGACAATCCCGATATGAACGAATATCGGAAATTAGTTAACGCCTGTCCAGCAGGACTTTATAAATTAGAAGATGATG
GAAGTATTCGATTTGATTCTGCTGGCTGTTTAGAGTGTGGAACGTGTAAATTCCTTTGCGGCGAAACCATTTTAGAGAAA
TGGGAGTACCCAAGAGGCACATTTGGCATTGAATACCGGTACGGGTAA

Upstream 100 bases:

>100_bases
GCACTCCATCACAACCAATAAGAAAAACTCTCATGAAGCACTGTAAAGAAGTGGGTTACATGAATCTGATTAAAGATGGA
ATTAAAGGAGTGACTTCAAT

Downstream 100 bases:

>100_bases
ACCAATAAATTAATTCAAAACATTATAACTTAGGGCTGGGATTATTACCCGGCCCTTAGCCGTGTTCAAACGAATATATT
AAGAAGCAAGATCACAAATA

Product: putative ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 94

Protein sequence:

>95_residues
MSEVVNVDVKLGVNKFHVDEGHPHIILKDNPDMNEYRKLVNACPAGLYKLEDDGSIRFDSAGCLECGTCKFLCGETILEK
WEYPRGTFGIEYRYG

Sequences:

>Translated_95_residues
MSEVVNVDVKLGVNKFHVDEGHPHIILKDNPDMNEYRKLVNACPAGLYKLEDDGSIRFDSAGCLECGTCKFLCGETILEK
WEYPRGTFGIEYRYG
>Mature_94_residues
SEVVNVDVKLGVNKFHVDEGHPHIILKDNPDMNEYRKLVNACPAGLYKLEDDGSIRFDSAGCLECGTCKFLCGETILEKW
EYPRGTFGIEYRYG

Specific function: Could be a 3Fe-4S cluster-containing protein. Probably participates in a redox process with ydiQ, ydiR and ydiS [H]

COG id: COG2440

COG function: function code C; Ferredoxin-like protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial-type ferredoxin family. FixX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787992, Length=95, Percent_Identity=73.6842105263158, Blast_Score=159, Evalue=2e-41,
Organism=Escherichia coli, GI1786228, Length=95, Percent_Identity=67.3684210526316, Blast_Score=139, Evalue=3e-35,
Organism=Escherichia coli, GI87082156, Length=87, Percent_Identity=43.6781609195402, Blast_Score=91, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017900
- InterPro:   IPR012206 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10760; Mature: 10629

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
5.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEVVNVDVKLGVNKFHVDEGHPHIILKDNPDMNEYRKLVNACPAGLYKLEDDGSIRFDS
CCCEEEEEEEECCEEEEECCCCCEEEECCCCCHHHHHHHHHHCCCCCEEECCCCCEEECC
AGCLECGTCKFLCGETILEKWEYPRGTFGIEYRYG
CCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECC
>Mature Secondary Structure 
SEVVNVDVKLGVNKFHVDEGHPHIILKDNPDMNEYRKLVNACPAGLYKLEDDGSIRFDS
CCEEEEEEEECCEEEEECCCCCEEEECCCCCHHHHHHHHHHCCCCCEEECCCCCEEECC
AGCLECGTCKFLCGETILEKWEYPRGTFGIEYRYG
CCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]