BacMap

Definition	Shewanella pealeana ATCC 700345 chromosome, complete genome.
Accession	NC_009901
Length	5,174,581

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The map label for this gene is yaaU [H]

Identifier: 157963854

GI number: 157963854

Start: 4909938

End: 4911296

Strand: Direct

Name: yaaU [H]

Synonym: Spea_4043

Alternate gene names: 157963854

Gene position: 4909938-4911296 (Clockwise)

Preceding gene: 157963853

Following gene: 157963855

Centisome position: 94.89

GC content: 43.56

Gene sequence:

>1359_bases
ATGAAACCAAGAACAAACTTCGATGATATGGAGTTCACTCCATTACACAGAAAAATAATGTTGTGGGGAAGTGGAGGTCC
TTTTCTAGATGGCTATGTTTTGGTGATCATCGGCCTAGCATTACAACAGCTCACTCCAGCACTCGAACTTGATGCTCAAT
GGATAGGTTTAGTCGGTGCGGCCACACTCGCAGGCCTGTTTATTGGTACTGCCTTATTTGGTTATGTTGCTGATATTTTC
GGTCGAAAATTGATGTTTATGATAGATATTATTGCTATCGCAGTGCTCTCTTTTGCAACCATGTTCATCTCCTCACCCAT
TGAGCTTGTCGTTATGCGTTTTTTAATCGGTATTGTAATCGGAGCCGATTATCCTATTGCTACATCTATGGTGGCGGAGT
TCTCCCCCACTAAGAAACGTGCTTACACAATGGGCTTTATTGCCGCAATGTGGTACGTCGGAGCGACTGCAGCAAACATG
GTTGGTTACCTACTATATGATGTAGAAGATGGTTGGCGCTGGATGTTCGGAAGTGCATTAATCCCATGTCTTATCATTCT
ACTTGGTCGCTTCCACCTTCCAGAGTCGCCACGATGGTTACTCAAGAAAGGTCGAGTAAAAGAGTGCAAAGAGACCATGG
AAAAGTTCTTTGGGCCCGATGTAGAGATTAGTAATGAATCGGCAGAACAAACAAAATACAGCAAGCTATTCGAACCTGTT
TATTTAAAAAGGATACTCTTCATCGGTATTATCTGGACTTGCCAGGTGATCCCTATGTTTGCCATTTACACCTTTGGGCC
ACAAATCATTGAGTTACTGGGGTTTACTGACGGAAAAGATGCCGCGTTAGGTAATATTGTCATCAGTTTGTTCTTTATGG
CGGGATGTATTCCGGCTATGTACTGGCTCAATTCAATTGGCCGACGGCCACTACTAATAGGCAGCTTCGGCATAATGACT
GCTTCATTAGCACTATTAGGTGTGGTGCCCGATCCAAGCATCTGGTTAATTATTGGCGCATTTGCCACGTACGCTTTCTT
CTCTGGTGGACCCGGGATCTTACAATGGCTCTATCCCAATGAACTGTTCCCAACAGAGATCCGCGCATCGGCCGTTGGTG
CTGTTATGTCACTTAGCCGTATCGGTACCATAGTCTCAACCTATGCTTTGCCTATTTTTATGACAACATATGGTATCTCT
CCCACCCTATTAGTTGGTGCTGCAATCTCGTTATTTGGATTAATCATCTCTGTCTTTATGGCGCCAGAAACTAAAGGATT
AACATTAGAAACCACAAGTTCAGCGGAATTTGAAAGTAAAGGTGCCGTAGTAGCATCTAATACATGCAAGACTATTTAA

Upstream 100 bases:

>100_bases
TATAAGCTCATGAAATACACAGATGGAGCCTGATCTCCATAAATTAAAATACAACAATCATATAGTTTTATATTTAACAT
TATATTTGGTGGTAAATCGC

Downstream 100 bases:

>100_bases
TTAGTAAGGAATAATATCCAACCAGATTAAATACTCGAGTAACAATACAGACTTAGTCAATTAACAATTGGGTTAATTGA
CAACGAACTATATTAAACAC

Product: general substrate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MKPRTNFDDMEFTPLHRKIMLWGSGGPFLDGYVLVIIGLALQQLTPALELDAQWIGLVGAATLAGLFIGTALFGYVADIF
GRKLMFMIDIIAIAVLSFATMFISSPIELVVMRFLIGIVIGADYPIATSMVAEFSPTKKRAYTMGFIAAMWYVGATAANM
VGYLLYDVEDGWRWMFGSALIPCLIILLGRFHLPESPRWLLKKGRVKECKETMEKFFGPDVEISNESAEQTKYSKLFEPV
YLKRILFIGIIWTCQVIPMFAIYTFGPQIIELLGFTDGKDAALGNIVISLFFMAGCIPAMYWLNSIGRRPLLIGSFGIMT
ASLALLGVVPDPSIWLIIGAFATYAFFSGGPGILQWLYPNELFPTEIRASAVGAVMSLSRIGTIVSTYALPIFMTTYGIS
PTLLVGAAISLFGLIISVFMAPETKGLTLETTSSAEFESKGAVVASNTCKTI

Sequences:

>Translated_452_residues
MKPRTNFDDMEFTPLHRKIMLWGSGGPFLDGYVLVIIGLALQQLTPALELDAQWIGLVGAATLAGLFIGTALFGYVADIF
GRKLMFMIDIIAIAVLSFATMFISSPIELVVMRFLIGIVIGADYPIATSMVAEFSPTKKRAYTMGFIAAMWYVGATAANM
VGYLLYDVEDGWRWMFGSALIPCLIILLGRFHLPESPRWLLKKGRVKECKETMEKFFGPDVEISNESAEQTKYSKLFEPV
YLKRILFIGIIWTCQVIPMFAIYTFGPQIIELLGFTDGKDAALGNIVISLFFMAGCIPAMYWLNSIGRRPLLIGSFGIMT
ASLALLGVVPDPSIWLIIGAFATYAFFSGGPGILQWLYPNELFPTEIRASAVGAVMSLSRIGTIVSTYALPIFMTTYGIS
PTLLVGAAISLFGLIISVFMAPETKGLTLETTSSAEFESKGAVVASNTCKTI
>Mature_452_residues
MKPRTNFDDMEFTPLHRKIMLWGSGGPFLDGYVLVIIGLALQQLTPALELDAQWIGLVGAATLAGLFIGTALFGYVADIF
GRKLMFMIDIIAIAVLSFATMFISSPIELVVMRFLIGIVIGADYPIATSMVAEFSPTKKRAYTMGFIAAMWYVGATAANM
VGYLLYDVEDGWRWMFGSALIPCLIILLGRFHLPESPRWLLKKGRVKECKETMEKFFGPDVEISNESAEQTKYSKLFEPV
YLKRILFIGIIWTCQVIPMFAIYTFGPQIIELLGFTDGKDAALGNIVISLFFMAGCIPAMYWLNSIGRRPLLIGSFGIMT
ASLALLGVVPDPSIWLIIGAFATYAFFSGGPGILQWLYPNELFPTEIRASAVGAVMSLSRIGTIVSTYALPIFMTTYGIS
PTLLVGAAISLFGLIISVFMAPETKGLTLETTSSAEFESKGAVVASNTCKTI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]

Homologues:

Organism=Homo sapiens, GI24308167, Length=434, Percent_Identity=21.889400921659, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI4506999, Length=443, Percent_Identity=25.2821670428894, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI31542327, Length=455, Percent_Identity=24.6153846153846, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI47933387, Length=405, Percent_Identity=26.1728395061728, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI47933389, Length=405, Percent_Identity=26.1728395061728, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI24497497, Length=358, Percent_Identity=25.1396648044693, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI90669191, Length=362, Percent_Identity=25.1381215469613, Blast_Score=83, Evalue=5e-16,
Organism=Homo sapiens, GI21553331, Length=317, Percent_Identity=23.3438485804416, Blast_Score=83, Evalue=5e-16,
Organism=Homo sapiens, GI203098995, Length=350, Percent_Identity=23.4285714285714, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI166795299, Length=421, Percent_Identity=27.790973871734, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI213021148, Length=423, Percent_Identity=23.4042553191489, Blast_Score=80, Evalue=5e-15,
Organism=Homo sapiens, GI166064021, Length=387, Percent_Identity=23.2558139534884, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI8923870, Length=402, Percent_Identity=23.6318407960199, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI302148518, Length=425, Percent_Identity=24.9411764705882, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI4507005, Length=402, Percent_Identity=22.8855721393035, Blast_Score=73, Evalue=6e-13,
Organism=Homo sapiens, GI23510410, Length=320, Percent_Identity=24.0625, Blast_Score=73, Evalue=7e-13,
Organism=Homo sapiens, GI24497490, Length=384, Percent_Identity=22.3958333333333, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI21361449, Length=452, Percent_Identity=24.1150442477876, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI5902090, Length=405, Percent_Identity=23.9506172839506, Blast_Score=67, Evalue=5e-11,
Organism=Homo sapiens, GI11415038, Length=422, Percent_Identity=21.563981042654, Blast_Score=67, Evalue=5e-11,
Organism=Escherichia coli, GI1786229, Length=440, Percent_Identity=69.7727272727273, Blast_Score=646, Evalue=0.0,
Organism=Escherichia coli, GI87082159, Length=430, Percent_Identity=34.8837209302326, Blast_Score=238, Evalue=9e-64,
Organism=Escherichia coli, GI1789312, Length=383, Percent_Identity=24.0208877284595, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1790463, Length=425, Percent_Identity=24.4705882352941, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI1789207, Length=421, Percent_Identity=23.2779097387173, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1788074, Length=423, Percent_Identity=24.5862884160757, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788068, Length=406, Percent_Identity=25.615763546798, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI87082231, Length=201, Percent_Identity=26.865671641791, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87082404, Length=214, Percent_Identity=26.1682242990654, Blast_Score=66, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71980582, Length=417, Percent_Identity=23.5011990407674, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71980584, Length=417, Percent_Identity=23.5011990407674, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17565976, Length=333, Percent_Identity=24.6246246246246, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17565978, Length=330, Percent_Identity=24.5454545454545, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI25145172, Length=400, Percent_Identity=26.75, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71986689, Length=415, Percent_Identity=24.0963855421687, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193202825, Length=415, Percent_Identity=24.0963855421687, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI32564663, Length=398, Percent_Identity=22.8643216080402, Blast_Score=76, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71986504, Length=397, Percent_Identity=23.6775818639798, Blast_Score=75, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI71986369, Length=382, Percent_Identity=25.9162303664921, Blast_Score=72, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI193209824, Length=414, Percent_Identity=24.8792270531401, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193206721, Length=436, Percent_Identity=23.8532110091743, Blast_Score=69, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17542342, Length=390, Percent_Identity=25.8974358974359, Blast_Score=66, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71980579, Length=317, Percent_Identity=23.3438485804416, Blast_Score=65, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6323512, Length=450, Percent_Identity=24, Blast_Score=94, Evalue=4e-20,
Organism=Saccharomyces cerevisiae, GI6324469, Length=448, Percent_Identity=22.9910714285714, Blast_Score=81, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6320705, Length=499, Percent_Identity=24.248496993988, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6319718, Length=377, Percent_Identity=25.9946949602122, Blast_Score=78, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6320595, Length=188, Percent_Identity=26.5957446808511, Blast_Score=74, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24640198, Length=432, Percent_Identity=24.7685185185185, Blast_Score=92, Evalue=9e-19,
Organism=Drosophila melanogaster, GI24640196, Length=432, Percent_Identity=24.7685185185185, Blast_Score=92, Evalue=9e-19,
Organism=Drosophila melanogaster, GI24640200, Length=432, Percent_Identity=24.7685185185185, Blast_Score=92, Evalue=9e-19,
Organism=Drosophila melanogaster, GI24668440, Length=404, Percent_Identity=25, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI19922616, Length=415, Percent_Identity=24.8192771084337, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24649618, Length=356, Percent_Identity=24.438202247191, Blast_Score=75, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24653937, Length=454, Percent_Identity=25.1101321585903, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24652795, Length=419, Percent_Identity=24.1050119331742, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24652793, Length=418, Percent_Identity=24.1626794258373, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24668456, Length=398, Percent_Identity=21.8592964824121, Blast_Score=74, Evalue=3e-13,
Organism=Drosophila melanogaster, GI221330907, Length=359, Percent_Identity=25.9052924791086, Blast_Score=73, Evalue=5e-13,
Organism=Drosophila melanogaster, GI20130083, Length=386, Percent_Identity=26.1658031088083, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24644782, Length=429, Percent_Identity=24.4755244755245, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI28573193, Length=429, Percent_Identity=24.4755244755245, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24647365, Length=381, Percent_Identity=26.509186351706, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24649616, Length=413, Percent_Identity=24.2130750605327, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI161078338, Length=376, Percent_Identity=26.3297872340426, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI17737451, Length=400, Percent_Identity=23.75, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24652312, Length=400, Percent_Identity=23.75, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24663515, Length=408, Percent_Identity=24.0196078431373, Blast_Score=65, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24663519, Length=408, Percent_Identity=24.0196078431373, Blast_Score=65, Evalue=8e-11,
Organism=Drosophila melanogaster, GI45552195, Length=420, Percent_Identity=21.1904761904762, Blast_Score=65, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24663511, Length=408, Percent_Identity=24.0196078431373, Blast_Score=65, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR005828 [H]

Pfam domain/function: PF00083 Sugar_tr [H]

EC number: NA

Molecular weight: Translated: 49454; Mature: 49454

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPRTNFDDMEFTPLHRKIMLWGSGGPFLDGYVLVIIGLALQQLTPALELDAQWIGLVGA
CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHH
ATLAGLFIGTALFGYVADIFGRKLMFMIDIIAIAVLSFATMFISSPIELVVMRFLIGIVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
GADYPIATSMVAEFSPTKKRAYTMGFIAAMWYVGATAANMVGYLLYDVEDGWRWMFGSAL
CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHH
IPCLIILLGRFHLPESPRWLLKKGRVKECKETMEKFFGPDVEISNESAEQTKYSKLFEPV
HHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHH
YLKRILFIGIIWTCQVIPMFAIYTFGPQIIELLGFTDGKDAALGNIVISLFFMAGCIPAM
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
YWLNSIGRRPLLIGSFGIMTASLALLGVVPDPSIWLIIGAFATYAFFSGGPGILQWLYPN
HHHHHCCCCCEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHEEECCCC
ELFPTEIRASAVGAVMSLSRIGTIVSTYALPIFMTTYGISPTLLVGAAISLFGLIISVFM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
APETKGLTLETTSSAEFESKGAVVASNTCKTI
CCCCCCCEEEECCCCCCCCCCCEEECCCCCCC
>Mature Secondary Structure
MKPRTNFDDMEFTPLHRKIMLWGSGGPFLDGYVLVIIGLALQQLTPALELDAQWIGLVGA
CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHH
ATLAGLFIGTALFGYVADIFGRKLMFMIDIIAIAVLSFATMFISSPIELVVMRFLIGIVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
GADYPIATSMVAEFSPTKKRAYTMGFIAAMWYVGATAANMVGYLLYDVEDGWRWMFGSAL
CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHH
IPCLIILLGRFHLPESPRWLLKKGRVKECKETMEKFFGPDVEISNESAEQTKYSKLFEPV
HHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHH
YLKRILFIGIIWTCQVIPMFAIYTFGPQIIELLGFTDGKDAALGNIVISLFFMAGCIPAM
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
YWLNSIGRRPLLIGSFGIMTASLALLGVVPDPSIWLIIGAFATYAFFSGGPGILQWLYPN
HHHHHCCCCCEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHEEECCCC
ELFPTEIRASAVGAVMSLSRIGTIVSTYALPIFMTTYGISPTLLVGAAISLFGLIISVFM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
APETKGLTLETTSSAEFESKGAVVASNTCKTI
CCCCCCCEEEECCCCCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1630901; 9278503 [H]