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The map label for this gene is fixB [H]

Identifier: 157963851

GI number: 157963851

Start: 4907056

End: 4907997

Strand: Direct

Name: fixB [H]

Synonym: Spea_4040

Alternate gene names: 157963851

Gene position: 4907056-4907997 (Clockwise)

Preceding gene: 157963850

Following gene: 157963852

Centisome position: 94.83

GC content: 46.71

Gene sequence:

>942_bases
ATGAGCAAACTATCTAATATTTGGGTATTTAGCGATATCGCTTCCCGTTTACCTGAAATGATCGCAGCTGGCGTAGCGTT
AGGCGAAAAAGTATCAACATTTGTTATCGGTACAGAAGCCGAAATCAATGCAGCCTTCTCATATGGTGCAACTCATGTGT
ACTACCTTGGTGACAAAGACAGTCAAAAGATCATCGAAGATTACAGCCACACTATTGCGCAAACGATTTCAGCTACAACA
GAAAACACACTAATGCTACTTGCGCCAACTAAGCGTGGCAAAGCCTTAGCAAGCAAGTTAGGCGTACAGCTTCAAGCTGG
TGTTGTTAATGACGTTACTGAGATTGACATTGAGAACGGTGTTCGCGCTAAGCACATGGCTTACGGTGGCCTAGCTATCG
CAGAAGAGAAAATTAATAGCCCTGTGGCGATTATTACCCTTAGCAGTGGTGTGTATGAAGCACAAGCTACGGATACGACT
CGCACCGGCGAAGCAGTAAATGTTGCCTTTATTGAGCCAACAACGGCAATTCAATGCGTAGAGCGCCGTGCCAAGCAAGG
CGAAAGCGTTAACCTAGGCAAAGCCAAGCGCGTTGTTGGTGTCGGTAGTGGTATTGGCAGCAAAGAGAATCTACAAGTTG
CGGCTGAACTGAGTGCACTGATTGGCGCAGAGCTTGGTTGCTCACGACCAATAGCTGAAACCGAAAAGTGGATGGAGCGC
GAGCGCTACATCGGCGTATCAGGCGTAATGTTAAAGCCTGAGATTTACTTCGCTCTGGGCATTTCAGGCCAGATCCAACA
CATGGTTGGAGCCTTAGGTTCACAAACAATCTTTGCCGTAAACAAGGATAAGAATGCTCCTATTTTCCAGTACGTTGACT
ACGGCATTGTTGGCGACATCAACAAGGTGATGCCAGCACTAATCAGTGCGTTAAAAGCCTAA

Upstream 100 bases:

>100_bases
AAAGCACGGCAGAAGATCGTTATCGAAGGTGATGACGAGCAACAGATAGCCCAATTCGCAGAACACTTACGTAAAGCACT
TAACTAATTAAGGATAAATG

Downstream 100 bases:

>100_bases
CGGAAACACAATTTTTATTGTTATTTCAATCGCCTTGAATCTCTGTAGAGACTAGAGGCGAATAGATAAATATACCTAGA
GAGTGACGAGTATGTCAGAA

Product: electron transfer flavoprotein subunit alpha

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MSKLSNIWVFSDIASRLPEMIAAGVALGEKVSTFVIGTEAEINAAFSYGATHVYYLGDKDSQKIIEDYSHTIAQTISATT
ENTLMLLAPTKRGKALASKLGVQLQAGVVNDVTEIDIENGVRAKHMAYGGLAIAEEKINSPVAIITLSSGVYEAQATDTT
RTGEAVNVAFIEPTTAIQCVERRAKQGESVNLGKAKRVVGVGSGIGSKENLQVAAELSALIGAELGCSRPIAETEKWMER
ERYIGVSGVMLKPEIYFALGISGQIQHMVGALGSQTIFAVNKDKNAPIFQYVDYGIVGDINKVMPALISALKA

Sequences:

>Translated_313_residues
MSKLSNIWVFSDIASRLPEMIAAGVALGEKVSTFVIGTEAEINAAFSYGATHVYYLGDKDSQKIIEDYSHTIAQTISATT
ENTLMLLAPTKRGKALASKLGVQLQAGVVNDVTEIDIENGVRAKHMAYGGLAIAEEKINSPVAIITLSSGVYEAQATDTT
RTGEAVNVAFIEPTTAIQCVERRAKQGESVNLGKAKRVVGVGSGIGSKENLQVAAELSALIGAELGCSRPIAETEKWMER
ERYIGVSGVMLKPEIYFALGISGQIQHMVGALGSQTIFAVNKDKNAPIFQYVDYGIVGDINKVMPALISALKA
>Mature_312_residues
SKLSNIWVFSDIASRLPEMIAAGVALGEKVSTFVIGTEAEINAAFSYGATHVYYLGDKDSQKIIEDYSHTIAQTISATTE
NTLMLLAPTKRGKALASKLGVQLQAGVVNDVTEIDIENGVRAKHMAYGGLAIAEEKINSPVAIITLSSGVYEAQATDTTR
TGEAVNVAFIEPTTAIQCVERRAKQGESVNLGKAKRVVGVGSGIGSKENLQVAAELSALIGAELGCSRPIAETEKWMERE
RYIGVSGVMLKPEIYFALGISGQIQHMVGALGSQTIFAVNKDKNAPIFQYVDYGIVGDINKVMPALISALKA

Specific function: Required for anaerobic carnitine reduction. May bring reductant to CaiA [H]

COG id: COG2025

COG function: function code C; Electron transfer flavoprotein, alpha subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ETF alpha-subunit/fixB family [H]

Homologues:

Organism=Homo sapiens, GI189181759, Length=220, Percent_Identity=30.9090909090909, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI4503607, Length=220, Percent_Identity=30.9090909090909, Blast_Score=108, Evalue=7e-24,
Organism=Escherichia coli, GI1786226, Length=312, Percent_Identity=53.8461538461538, Blast_Score=345, Evalue=2e-96,
Organism=Escherichia coli, GI1787990, Length=312, Percent_Identity=52.5641025641026, Blast_Score=327, Evalue=9e-91,
Organism=Escherichia coli, GI87082157, Length=241, Percent_Identity=27.3858921161826, Blast_Score=75, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17506929, Length=297, Percent_Identity=28.6195286195286, Blast_Score=108, Evalue=5e-24,
Organism=Saccharomyces cerevisiae, GI6325261, Length=127, Percent_Identity=33.0708661417323, Blast_Score=79, Evalue=1e-15,
Organism=Drosophila melanogaster, GI17136898, Length=229, Percent_Identity=30.5676855895196, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24652801, Length=229, Percent_Identity=30.5676855895196, Blast_Score=99, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001308
- InterPro:   IPR014730
- InterPro:   IPR014731
- InterPro:   IPR018206
- InterPro:   IPR014729 [H]

Pfam domain/function: PF01012 ETF; PF00766 ETF_alpha [H]

EC number: NA

Molecular weight: Translated: 33299; Mature: 33167

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS00591 GLYCOSYL_HYDROL_F10

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLSNIWVFSDIASRLPEMIAAGVALGEKVSTFVIGTEAEINAAFSYGATHVYYLGDKD
CCCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC
SQKIIEDYSHTIAQTISATTENTLMLLAPTKRGKALASKLGVQLQAGVVNDVTEIDIENG
HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHCCEEECCCCCCHHEEECCCC
VRAKHMAYGGLAIAEEKINSPVAIITLSSGVYEAQATDTTRTGEAVNVAFIEPTTAIQCV
CCCHHEECCCEEEEHHHCCCCEEEEEECCCCEEECCCCCCCCCCEEEEEEECCHHHHHHH
ERRAKQGESVNLGKAKRVVGVGSGIGSKENLQVAAELSALIGAELGCSRPIAETEKWMER
HHHHHCCCCCCCCCHHEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
ERYIGVSGVMLKPEIYFALGISGQIQHMVGALGSQTIFAVNKDKNAPIFQYVDYGIVGDI
HHCCCCCCEEECCEEEEEEECCCHHHHHHHHCCCCEEEEEECCCCCCCEEEECCCCCCCH
NKVMPALISALKA
HHHHHHHHHHHCC
>Mature Secondary Structure 
SKLSNIWVFSDIASRLPEMIAAGVALGEKVSTFVIGTEAEINAAFSYGATHVYYLGDKD
CCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC
SQKIIEDYSHTIAQTISATTENTLMLLAPTKRGKALASKLGVQLQAGVVNDVTEIDIENG
HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHCCEEECCCCCCHHEEECCCC
VRAKHMAYGGLAIAEEKINSPVAIITLSSGVYEAQATDTTRTGEAVNVAFIEPTTAIQCV
CCCHHEECCCEEEEHHHCCCCEEEEEECCCCEEECCCCCCCCCCEEEEEEECCHHHHHHH
ERRAKQGESVNLGKAKRVVGVGSGIGSKENLQVAAELSALIGAELGCSRPIAETEKWMER
HHHHHCCCCCCCCCHHEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
ERYIGVSGVMLKPEIYFALGISGQIQHMVGALGSQTIFAVNKDKNAPIFQYVDYGIVGDI
HHCCCCCCEEECCEEEEEEECCCHHHHHHHHCCCCEEEEEECCCCCCCEEEECCCCCCCH
NKVMPALISALKA
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA