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The map label for this gene is 157963818

Identifier: 157963818

GI number: 157963818

Start: 4867601

End: 4868230

Strand: Direct

Name: 157963818

Synonym: Spea_4007

Alternate gene names: NA

Gene position: 4867601-4868230 (Clockwise)

Preceding gene: 157963817

Following gene: 157963820

Centisome position: 94.07

GC content: 48.41

Gene sequence:

>630_bases
ATGAAACTCACCTGGATAATTGCGGCCGTGTTAATGGTAGCAGCGGGCGTATACGCAAGCATACAGTTAGCTCAGCCAAA
GAACTTAGCGCTGCAAACCAGCTTCGAGTATCCGGCGCCGCTGCCATTAGCGCCTTTCTCGCTAACAGATCAACGGGGCA
ATAGCTTTAGCAATACCGACCTGCTTGGCAAGTGGAGTCTGTTTTTCATCGGCTACACCTCCTGCCCAGATGTTTGCCCT
ACCACCATGGGCAAGTTGAGCTCAGCCTACCCCAAGCTCACAGACAAAGCCGAGCTGCAGGTGATTTTCCTGTCGGTCGA
TCCTCAAAGAGACTCTACAGAAACCTTAGAAAACTATATTAAATTCTTTAATCCCGAGTTTATCGCCGTAACCGGAGAGC
ATAGCCAGTTGTTTCCGGTGACTCGCAGCTTAGGTTTCGTCTATGCCATGGTAGGAAATGGCCCTGATTATCAGGTCGAT
CACAGCGCCTCATTTGCCTTAGTTTCACCTCAAGGGGAGAAGATCGCCATCATCAAGCCGAAATCGAGTAGTCCGGGAAA
ACTGCCGCAGATCAAAAATAGCGATTTAATTCATGACGTCAATGCAATTATTGATAAGTATTCCGGTTAA

Upstream 100 bases:

>100_bases
TTTTCTATCTATCACTTAATGCTGCTATTTATCGCTTTACTGGTCGATCATTATTTATGGGTGTAACGAGAACAAGCCCG
TTACCGAGCGAGGATAAACC

Downstream 100 bases:

>100_bases
TACACATCGTAAAATTCGAGCAAAAAAAAACGCCAATGATGACGTTTTATTTTGCTTTAAAAGCTATTCAGCAATCCACT
GACCGTTTGACTTAGGCCTA

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MKLTWIIAAVLMVAAGVYASIQLAQPKNLALQTSFEYPAPLPLAPFSLTDQRGNSFSNTDLLGKWSLFFIGYTSCPDVCP
TTMGKLSSAYPKLTDKAELQVIFLSVDPQRDSTETLENYIKFFNPEFIAVTGEHSQLFPVTRSLGFVYAMVGNGPDYQVD
HSASFALVSPQGEKIAIIKPKSSSPGKLPQIKNSDLIHDVNAIIDKYSG

Sequences:

>Translated_209_residues
MKLTWIIAAVLMVAAGVYASIQLAQPKNLALQTSFEYPAPLPLAPFSLTDQRGNSFSNTDLLGKWSLFFIGYTSCPDVCP
TTMGKLSSAYPKLTDKAELQVIFLSVDPQRDSTETLENYIKFFNPEFIAVTGEHSQLFPVTRSLGFVYAMVGNGPDYQVD
HSASFALVSPQGEKIAIIKPKSSSPGKLPQIKNSDLIHDVNAIIDKYSG
>Mature_209_residues
MKLTWIIAAVLMVAAGVYASIQLAQPKNLALQTSFEYPAPLPLAPFSLTDQRGNSFSNTDLLGKWSLFFIGYTSCPDVCP
TTMGKLSSAYPKLTDKAELQVIFLSVDPQRDSTETLENYIKFFNPEFIAVTGEHSQLFPVTRSLGFVYAMVGNGPDYQVD
HSASFALVSPQGEKIAIIKPKSSSPGKLPQIKNSDLIHDVNAIIDKYSG

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=142, Percent_Identity=36.6197183098592, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI281182727, Length=135, Percent_Identity=34.8148148148148, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI281182722, Length=135, Percent_Identity=34.8148148148148, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI281182716, Length=135, Percent_Identity=34.8148148148148, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI153791313, Length=135, Percent_Identity=34.8148148148148, Blast_Score=95, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17531419, Length=140, Percent_Identity=27.8571428571429, Blast_Score=72, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6319498, Length=195, Percent_Identity=31.2820512820513, Blast_Score=104, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6319511, Length=174, Percent_Identity=31.6091954022989, Blast_Score=97, Evalue=2e-21,
Organism=Drosophila melanogaster, GI19920710, Length=136, Percent_Identity=34.5588235294118, Blast_Score=96, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22841; Mature: 22841

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTWIIAAVLMVAAGVYASIQLAQPKNLALQTSFEYPAPLPLAPFSLTDQRGNSFSNTD
CCHHHHHHHHHHHHHCHHEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
LLGKWSLFFIGYTSCPDVCPTTMGKLSSAYPKLTDKAELQVIFLSVDPQRDSTETLENYI
CEEEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHH
KFFNPEFIAVTGEHSQLFPVTRSLGFVYAMVGNGPDYQVDHSASFALVSPQGEKIAIIKP
HHCCCCEEEEECCCCEEHHHHHCCCEEEEEECCCCCEEEECCCCEEEECCCCCEEEEEEC
KSSSPGKLPQIKNSDLIHDVNAIIDKYSG
CCCCCCCCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLTWIIAAVLMVAAGVYASIQLAQPKNLALQTSFEYPAPLPLAPFSLTDQRGNSFSNTD
CCHHHHHHHHHHHHHCHHEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
LLGKWSLFFIGYTSCPDVCPTTMGKLSSAYPKLTDKAELQVIFLSVDPQRDSTETLENYI
CEEEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHH
KFFNPEFIAVTGEHSQLFPVTRSLGFVYAMVGNGPDYQVDHSASFALVSPQGEKIAIIKP
HHCCCCEEEEECCCCEEHHHHHCCCEEEEEECCCCCEEEECCCCEEEECCCCCEEEEEEC
KSSSPGKLPQIKNSDLIHDVNAIIDKYSG
CCCCCCCCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]