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The map label for this gene is yjjW [H]

Identifier: 157963755

GI number: 157963755

Start: 4795292

End: 4796170

Strand: Direct

Name: yjjW [H]

Synonym: Spea_3944

Alternate gene names: 157963755

Gene position: 4795292-4796170 (Clockwise)

Preceding gene: 157963754

Following gene: 157963757

Centisome position: 92.67

GC content: 48.35

Gene sequence:

>879_bases
ATGGGCAGAGTCGCGACGGTTAACCAAATTATTCCCTTTTCTTGTGTCGATGGCCCAGGCAGCCGCTTGGTCATCTTCCT
GCAAGGGTGTAATTTTAACTGCAAAAATTGCCACAACCCGTACACCATAGACATGTGTGACAGTTGTGGCGACTGCGTGG
CCACCTGCCCTGTTAATGCACTCAGCTTAAACCTAGATAAACAGGGAAAGTCTAAGATAGTGTGGGACAGTGACAAGTGC
ACCCAGTGCGATATCTGCCTATCGACTTGCCCTAAGCAGTCTAGTCCAAAGATCCGCCAATACAGCGTAGAGCAAATGCT
GGAACTGATCCGTCGCCAAGTGCACTTTATCAACGGCATCACCGTCAGCGGCGGCGAAGCCACCTTGCAACTGCCATTTA
TTATAGAGCTATTTCAAGCCATTAAAGCCAGCGATGACTTATCTCATCTGAGCTGCATGATCGACAGCAACGGTTATCTG
ACTGAGGGTGGCTGGCAGCAAGTCATGCCCTACCTCGACGGCGCGATGATTGATCTGAAATCTTGGCAAGAGCACACCCA
CCGTTATATTACCGGCCGCGATAATCACCGCGTATTTAGCAGTTTAAAGCTGCTCGCTGCAGAAGGTAAATTATACGAAA
TACGCCTACTGTATATTCCGAAGATCAGTGATATTGATAGTGAAGTTAATGCCATAGCAGGTTATTTAACTCAGCTACCT
GATAGCGTTAGGGTGAAACTCAACGCCTTTCAACACCACGGGGTAACAGGCGAAGCCCGCCTTTGGGACACTTGCAGTGA
ACAGCAGATGTTGGAGTTAGCGGCACGGCTAACTGAACGTGGTGTTGGCAACTTAGTTTTACCCAATGTTTATTTGTAG

Upstream 100 bases:

>100_bases
AAACACCAAAATTTTAGAGCGTCAGCCAAGAGTTGTTGCCCATGAGCACACACCGGCATATAGCAAGTAATACAGATACG
TAAGGAAGTAGAGCAAAAAC

Downstream 100 bases:

>100_bases
GCGTTCTTGCCAGCCTAGTTGGGGCGCTTTGGGGTAAAGCAGTGAACCTTAGCTGTAAACTCATATGAGTCTTCAAACCA
ACTTCCAGCATTGGTGGTTC

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MGRVATVNQIIPFSCVDGPGSRLVIFLQGCNFNCKNCHNPYTIDMCDSCGDCVATCPVNALSLNLDKQGKSKIVWDSDKC
TQCDICLSTCPKQSSPKIRQYSVEQMLELIRRQVHFINGITVSGGEATLQLPFIIELFQAIKASDDLSHLSCMIDSNGYL
TEGGWQQVMPYLDGAMIDLKSWQEHTHRYITGRDNHRVFSSLKLLAAEGKLYEIRLLYIPKISDIDSEVNAIAGYLTQLP
DSVRVKLNAFQHHGVTGEARLWDTCSEQQMLELAARLTERGVGNLVLPNVYL

Sequences:

>Translated_292_residues
MGRVATVNQIIPFSCVDGPGSRLVIFLQGCNFNCKNCHNPYTIDMCDSCGDCVATCPVNALSLNLDKQGKSKIVWDSDKC
TQCDICLSTCPKQSSPKIRQYSVEQMLELIRRQVHFINGITVSGGEATLQLPFIIELFQAIKASDDLSHLSCMIDSNGYL
TEGGWQQVMPYLDGAMIDLKSWQEHTHRYITGRDNHRVFSSLKLLAAEGKLYEIRLLYIPKISDIDSEVNAIAGYLTQLP
DSVRVKLNAFQHHGVTGEARLWDTCSEQQMLELAARLTERGVGNLVLPNVYL
>Mature_291_residues
GRVATVNQIIPFSCVDGPGSRLVIFLQGCNFNCKNCHNPYTIDMCDSCGDCVATCPVNALSLNLDKQGKSKIVWDSDKCT
QCDICLSTCPKQSSPKIRQYSVEQMLELIRRQVHFINGITVSGGEATLQLPFIIELFQAIKASDDLSHLSCMIDSNGYLT
EGGWQQVMPYLDGAMIDLKSWQEHTHRYITGRDNHRVFSSLKLLAAEGKLYEIRLLYIPKISDIDSEVNAIAGYLTQLPD
SVRVKLNAFQHHGVTGEARLWDTCSEQQMLELAARLTERGVGNLVLPNVYL

Specific function: Unknown

COG id: COG1180

COG function: function code O; Pyruvate-formate lyase-activating enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1790839, Length=290, Percent_Identity=50, Blast_Score=306, Evalue=1e-84,
Organism=Escherichia coli, GI1787130, Length=260, Percent_Identity=24.2307692307692, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790389, Length=228, Percent_Identity=27.1929824561404, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI226510931, Length=242, Percent_Identity=24.7933884297521, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR011352
- InterPro:   IPR001989
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 32579; Mature: 32448

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS01087 RADICAL_ACTIVATING ; PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
4.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRVATVNQIIPFSCVDGPGSRLVIFLQGCNFNCKNCHNPYTIDMCDSCGDCVATCPVNA
CCCCEEHHHCCCEEECCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCEEHHCCCEE
LSLNLDKQGKSKIVWDSDKCTQCDICLSTCPKQSSPKIRQYSVEQMLELIRRQVHFINGI
EEEECCCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCE
TVSGGEATLQLPFIIELFQAIKASDDLSHLSCMIDSNGYLTEGGWQQVMPYLDGAMIDLK
EECCCCEEEEHHHHHHHHHHHHCCCCCCEEEEEECCCCEEECCCHHHHHHHHCCCEEEHH
SWQEHTHRYITGRDNHRVFSSLKLLAAEGKLYEIRLLYIPKISDIDSEVNAIAGYLTQLP
HHHHHHCEEECCCCCHHHHHHHHHHEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHCC
DSVRVKLNAFQHHGVTGEARLWDTCSEQQMLELAARLTERGVGNLVLPNVYL
CCEEEEEEEHHHCCCCCCCHHCCCCCHHHHHHHHHHHHHCCCCCEECCCCCC
>Mature Secondary Structure 
GRVATVNQIIPFSCVDGPGSRLVIFLQGCNFNCKNCHNPYTIDMCDSCGDCVATCPVNA
CCCEEHHHCCCEEECCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCEEHHCCCEE
LSLNLDKQGKSKIVWDSDKCTQCDICLSTCPKQSSPKIRQYSVEQMLELIRRQVHFINGI
EEEECCCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCE
TVSGGEATLQLPFIIELFQAIKASDDLSHLSCMIDSNGYLTEGGWQQVMPYLDGAMIDLK
EECCCCEEEEHHHHHHHHHHHHCCCCCCEEEEEECCCCEEECCCHHHHHHHHCCCEEEHH
SWQEHTHRYITGRDNHRVFSSLKLLAAEGKLYEIRLLYIPKISDIDSEVNAIAGYLTQLP
HHHHHHCEEECCCCCHHHHHHHHHHEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHCC
DSVRVKLNAFQHHGVTGEARLWDTCSEQQMLELAARLTERGVGNLVLPNVYL
CCEEEEEEEHHHCCCCCCCHHCCCCCHHHHHHHHHHHHHCCCCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]