| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is yjjI [H]
Identifier: 157963754
GI number: 157963754
Start: 4793708
End: 4795261
Strand: Direct
Name: yjjI [H]
Synonym: Spea_3943
Alternate gene names: 157963754
Gene position: 4793708-4795261 (Clockwise)
Preceding gene: 157963753
Following gene: 157963755
Centisome position: 92.64
GC content: 48.13
Gene sequence:
>1554_bases ATGACCGTTAAAAATAGACTCGCTCAGATAACTCGTGACCCTAACCTTTCGCCAAAGCAAAAATCTAACTTCTTAGCCTT AGAAGCTGAGGCTAGCCTGCCCTATATGGCGATCTCCGATGCAGTATCTGAAGCTAAAAATAGCGGCATTATCTGTGATA TGTTTGAAGGCAACGCACCATTCAAGCCAAGATATGTGCTACCCGATTACGCCAAGTTTCTTCAGAATGGTTCTGAGTAC TTAGAGCTAAGTCCGGCGCAGGACTTAGATGAAGCACTTAATGCTCTGACGATTATTTATCACCACGTGCCATCGGTCAC CAATATTCCCGTCTATCTCGGTCAGCTCGACGATATTTTGCTGCCATTCTGCCAAGGCCTAGAGCCTGAAGCTATTTACC GCAAGTTAAAGCTATTCTGGATCATGCTAGATCGCACCTTGCCGGATGCCTTTATGCACGTAAACATAGGCCCGACTGAC AATATCGTTTGTCGTACCATTTTACGCGTCGATGCAGAGCTTAAGCAGATAGCCCCCAATCTGACTTTTATGTATGACCC AGAGATCACCCCTGATGAACTACTACAAGTCGCCGCCAGCAATATCTGTGAGTGCAGCAAGCCGCATATCGCCAACTACC CACTGCACGCCAATAGCTTCGATGACAAAGGCTTTGGTATCGTCAGCTGCTATAACTCACTGCCACTCGCTGGCGGCGCG AATACCTTAGTCAGACTGAACCTGAAACAAGTTGCGTTAAAAGCAAGCAGTGTGGGCGACTTTTTTACCCAAGTTCTGCC GCACTATTGCCAGCTGACTTACGAGTTAATCGATGCTCGCGCTAAGTTCTTGCATGAAGAGTCCAATTTCTTCAACAGTT TCTTAGTCAAAGAGGGCCTGATTGAAGAGTCCCGTTTCGCGCCTATGTTTGGCATCTACGGCATGGCCGAAGCGGTCAAT ATCTTGCAAGGATCGCCTGACTTTAATGAAGACAACATAGATAAGCCTAGCAGCCATTATGGCCATAATGCCGCTGCCAA CGCGCTGGGCCACAAGATCTCCAAAGCCCTAGATGGCATAGTGAAATCGACTCAGGTGAAATACGGTTATAACGGCCTCG CCCTGCTACATTCACAGGGCGGGATCAGTATAGATAAAGATGTGACACCGGGTGTGCGTATTCCATATGGCACAGAACCA AACCCGATCGCCCATATTCAAGCGCTAGCCGAGCATCACCAGTATTACACCTCTGGTATTAGCGACATCCTCACCATAGA TGAGACGGTAAAAGCTAACCCGCAGGCAATGATGCAGCTGTGTAAAGGTGCGCTAAGCCTAGGTTTCCGTGAGTTTACCG CCAACGTAGCCTCAAATGATTTGGTTCGCGTCACCGGTTATATGATCAAACTTTCAGATATCGCTAGCTTTAAGGCTGAG GGCTCACGCACCAACACCACCTGGTTAGGTGCTGAGGCTGCGCAAAACACCAAAATTTTAGAGCGTCAGCCAAGAGTTGT TGCCCATGAGCACACACCGGCATATAGCAAGTAA
Upstream 100 bases:
>100_bases AATTTCCAAATTGGAAATCACTGTTTACCAGCTTTTCACTATAAGAATCTACTCATCACACTTTAAAATATATCCATAAA ATATTAGTGGATATTGAATC
Downstream 100 bases:
>100_bases TACAGATACGTAAGGAAGTAGAGCAAAAACATGGGCAGAGTCGCGACGGTTAACCAAATTATTCCCTTTTCTTGTGTCGA TGGCCCAGGCAGCCGCTTGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 517; Mature: 516
Protein sequence:
>517_residues MTVKNRLAQITRDPNLSPKQKSNFLALEAEASLPYMAISDAVSEAKNSGIICDMFEGNAPFKPRYVLPDYAKFLQNGSEY LELSPAQDLDEALNALTIIYHHVPSVTNIPVYLGQLDDILLPFCQGLEPEAIYRKLKLFWIMLDRTLPDAFMHVNIGPTD NIVCRTILRVDAELKQIAPNLTFMYDPEITPDELLQVAASNICECSKPHIANYPLHANSFDDKGFGIVSCYNSLPLAGGA NTLVRLNLKQVALKASSVGDFFTQVLPHYCQLTYELIDARAKFLHEESNFFNSFLVKEGLIEESRFAPMFGIYGMAEAVN ILQGSPDFNEDNIDKPSSHYGHNAAANALGHKISKALDGIVKSTQVKYGYNGLALLHSQGGISIDKDVTPGVRIPYGTEP NPIAHIQALAEHHQYYTSGISDILTIDETVKANPQAMMQLCKGALSLGFREFTANVASNDLVRVTGYMIKLSDIASFKAE GSRTNTTWLGAEAAQNTKILERQPRVVAHEHTPAYSK
Sequences:
>Translated_517_residues MTVKNRLAQITRDPNLSPKQKSNFLALEAEASLPYMAISDAVSEAKNSGIICDMFEGNAPFKPRYVLPDYAKFLQNGSEY LELSPAQDLDEALNALTIIYHHVPSVTNIPVYLGQLDDILLPFCQGLEPEAIYRKLKLFWIMLDRTLPDAFMHVNIGPTD NIVCRTILRVDAELKQIAPNLTFMYDPEITPDELLQVAASNICECSKPHIANYPLHANSFDDKGFGIVSCYNSLPLAGGA NTLVRLNLKQVALKASSVGDFFTQVLPHYCQLTYELIDARAKFLHEESNFFNSFLVKEGLIEESRFAPMFGIYGMAEAVN ILQGSPDFNEDNIDKPSSHYGHNAAANALGHKISKALDGIVKSTQVKYGYNGLALLHSQGGISIDKDVTPGVRIPYGTEP NPIAHIQALAEHHQYYTSGISDILTIDETVKANPQAMMQLCKGALSLGFREFTANVASNDLVRVTGYMIKLSDIASFKAE GSRTNTTWLGAEAAQNTKILERQPRVVAHEHTPAYSK >Mature_516_residues TVKNRLAQITRDPNLSPKQKSNFLALEAEASLPYMAISDAVSEAKNSGIICDMFEGNAPFKPRYVLPDYAKFLQNGSEYL ELSPAQDLDEALNALTIIYHHVPSVTNIPVYLGQLDDILLPFCQGLEPEAIYRKLKLFWIMLDRTLPDAFMHVNIGPTDN IVCRTILRVDAELKQIAPNLTFMYDPEITPDELLQVAASNICECSKPHIANYPLHANSFDDKGFGIVSCYNSLPLAGGAN TLVRLNLKQVALKASSVGDFFTQVLPHYCQLTYELIDARAKFLHEESNFFNSFLVKEGLIEESRFAPMFGIYGMAEAVNI LQGSPDFNEDNIDKPSSHYGHNAAANALGHKISKALDGIVKSTQVKYGYNGLALLHSQGGISIDKDVTPGVRIPYGTEPN PIAHIQALAEHHQYYTSGISDILTIDETVKANPQAMMQLCKGALSLGFREFTANVASNDLVRVTGYMIKLSDIASFKAEG SRTNTTWLGAEAAQNTKILERQPRVVAHEHTPAYSK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_0521 [H]
Homologues:
Organism=Escherichia coli, GI1790840, Length=516, Percent_Identity=61.8217054263566, Blast_Score=672, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016905 [H]
Pfam domain/function: PF11230 DUF3029 [H]
EC number: NA
Molecular weight: Translated: 57073; Mature: 56941
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVKNRLAQITRDPNLSPKQKSNFLALEAEASLPYMAISDAVSEAKNSGIICDMFEGNAP CCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCC FKPRYVLPDYAKFLQNGSEYLELSPAQDLDEALNALTIIYHHVPSVTNIPVYLGQLDDIL CCCCCCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHH LPFCQGLEPEAIYRKLKLFWIMLDRTLPDAFMHVNIGPTDNIVCRTILRVDAELKQIAPN HHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCC LTFMYDPEITPDELLQVAASNICECSKPHIANYPLHANSFDDKGFGIVSCYNSLPLAGGA CEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC NTLVRLNLKQVALKASSVGDFFTQVLPHYCQLTYELIDARAKFLHEESNFFNSFLVKEGL CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC IEESRFAPMFGIYGMAEAVNILQGSPDFNEDNIDKPSSHYGHNAAANALGHKISKALDGI HHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH VKSTQVKYGYNGLALLHSQGGISIDKDVTPGVRIPYGTEPNPIAHIQALAEHHQYYTSGI HHHCEEEECCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCH SDILTIDETVKANPQAMMQLCKGALSLGFREFTANVASNDLVRVTGYMIKLSDIASFKAE HHHEECCHHHCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEEEEEEHHHHHHHCC GSRTNTTWLGAEAAQNTKILERQPRVVAHEHTPAYSK CCCCCCEEECCHHHCCCHHHHCCCCEEEECCCCCCCC >Mature Secondary Structure TVKNRLAQITRDPNLSPKQKSNFLALEAEASLPYMAISDAVSEAKNSGIICDMFEGNAP CHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCC FKPRYVLPDYAKFLQNGSEYLELSPAQDLDEALNALTIIYHHVPSVTNIPVYLGQLDDIL CCCCCCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHH LPFCQGLEPEAIYRKLKLFWIMLDRTLPDAFMHVNIGPTDNIVCRTILRVDAELKQIAPN HHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCC LTFMYDPEITPDELLQVAASNICECSKPHIANYPLHANSFDDKGFGIVSCYNSLPLAGGA CEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC NTLVRLNLKQVALKASSVGDFFTQVLPHYCQLTYELIDARAKFLHEESNFFNSFLVKEGL CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC IEESRFAPMFGIYGMAEAVNILQGSPDFNEDNIDKPSSHYGHNAAANALGHKISKALDGI HHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH VKSTQVKYGYNGLALLHSQGGISIDKDVTPGVRIPYGTEPNPIAHIQALAEHHQYYTSGI HHHCEEEECCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCH SDILTIDETVKANPQAMMQLCKGALSLGFREFTANVASNDLVRVTGYMIKLSDIASFKAE HHHEECCHHHCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEEEEEEHHHHHHHCC GSRTNTTWLGAEAAQNTKILERQPRVVAHEHTPAYSK CCCCCCEEECCHHHCCCHHHHCCCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503; 3019678 [H]