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The map label for this gene is orn [H]

Identifier: 157963361

GI number: 157963361

Start: 4332460

End: 4333005

Strand: Reverse

Name: orn [H]

Synonym: Spea_3547

Alternate gene names: 157963361

Gene position: 4333005-4332460 (Counterclockwise)

Preceding gene: 157963367

Following gene: 157963360

Centisome position: 83.74

GC content: 43.04

Gene sequence:

>546_bases
ATGGCTATAGATGAAAACAATCTGATTTGGGTCGATTTGGAAATGACAGGGCTTGAGCCTGACGTTGACAGAATTATTGA
AATTGCCACGATAGTGACAGATAAAGAGCTCAATATTATTGCGCAAGGGCCTGTTTTTGCTATCCATCAATCCGATGAGC
AGCTTGCTCTAATGGATGATTGGAACCAGAAACATCACGGTCAGTCGGGTCTAGTTGATCGCGTGAGAGCGAGTACGATA
AATGAAGAACAAGCAATTGCCGAGACTATTGCGTTCTTGTCGCAATATGTGCCAGCGGGTGCTTCACCTATGTGTGGTAA
TAGTATTGGCCAAGATCGTCGTTTTCTAAACCGTTATATGCCAGAGCTAGAGGGTTATTTCCATTACCGCAATATAGATG
TGAGCACTATTAAAGAGTTGGTCCGTCGTTGGGAGCCATCTGCGATGGAGGGCTTTAGCAAGAAGAACACCCACCAAGCT
TTGCAAGATATTGAAGAATCTATCGCCGAATTGCAGTTTTATCGAGCTAAAGTATTTACTATTTAA

Upstream 100 bases:

>100_bases
CAATGATAAAGGTGATTTTGTGTTGCTTAAAAAAGCAGTATGATACACGGTCTAGAATAAAAAAGCCTGAATTTAGGCTA
ACAGGAAAACAGGTCGCGTT

Downstream 100 bases:

>100_bases
CCGATCAGACAGATTATTTGAAAGAAAGGGTTGCAGAGTAGGGAAATTTTCATATAATGCGGCCTCAACTTTTCGCTAAG
CACCAACTTAGTGATTATTG

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MAIDENNLIWVDLEMTGLEPDVDRIIEIATIVTDKELNIIAQGPVFAIHQSDEQLALMDDWNQKHHGQSGLVDRVRASTI
NEEQAIAETIAFLSQYVPAGASPMCGNSIGQDRRFLNRYMPELEGYFHYRNIDVSTIKELVRRWEPSAMEGFSKKNTHQA
LQDIEESIAELQFYRAKVFTI

Sequences:

>Translated_181_residues
MAIDENNLIWVDLEMTGLEPDVDRIIEIATIVTDKELNIIAQGPVFAIHQSDEQLALMDDWNQKHHGQSGLVDRVRASTI
NEEQAIAETIAFLSQYVPAGASPMCGNSIGQDRRFLNRYMPELEGYFHYRNIDVSTIKELVRRWEPSAMEGFSKKNTHQA
LQDIEESIAELQFYRAKVFTI
>Mature_180_residues
AIDENNLIWVDLEMTGLEPDVDRIIEIATIVTDKELNIIAQGPVFAIHQSDEQLALMDDWNQKHHGQSGLVDRVRASTIN
EEQAIAETIAFLSQYVPAGASPMCGNSIGQDRRFLNRYMPELEGYFHYRNIDVSTIKELVRRWEPSAMEGFSKKNTHQAL
QDIEESIAELQFYRAKVFTI

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=173, Percent_Identity=52.0231213872832, Blast_Score=192, Evalue=2e-49,
Organism=Escherichia coli, GI87082382, Length=175, Percent_Identity=67.4285714285714, Blast_Score=265, Evalue=9e-73,
Organism=Caenorhabditis elegans, GI17557752, Length=175, Percent_Identity=47.4285714285714, Blast_Score=159, Evalue=7e-40,
Organism=Saccharomyces cerevisiae, GI6323088, Length=176, Percent_Identity=39.2045454545455, Blast_Score=115, Evalue=3e-27,
Organism=Drosophila melanogaster, GI21355135, Length=176, Percent_Identity=44.8863636363636, Blast_Score=183, Evalue=4e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 20684; Mature: 20552

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIDENNLIWVDLEMTGLEPDVDRIIEIATIVTDKELNIIAQGPVFAIHQSDEQLALMDD
CCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCEEEEECCCCEEEHHCC
WNQKHHGQSGLVDRVRASTINEEQAIAETIAFLSQYVPAGASPMCGNSIGQDRRFLNRYM
CCHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
PELEGYFHYRNIDVSTIKELVRRWEPSAMEGFSKKNTHQALQDIEESIAELQFYRAKVFT
HHHHCEEEECCCCHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEC
I
C
>Mature Secondary Structure 
AIDENNLIWVDLEMTGLEPDVDRIIEIATIVTDKELNIIAQGPVFAIHQSDEQLALMDD
CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCEEEEECCCCEEEHHCC
WNQKHHGQSGLVDRVRASTINEEQAIAETIAFLSQYVPAGASPMCGNSIGQDRRFLNRYM
CCHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
PELEGYFHYRNIDVSTIKELVRRWEPSAMEGFSKKNTHQALQDIEESIAELQFYRAKVFT
HHHHCEEEECCCCHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEC
I
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA