| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157963041
Identifier: 157963041
GI number: 157963041
Start: 3952171
End: 3953280
Strand: Reverse
Name: 157963041
Synonym: Spea_3224
Alternate gene names: NA
Gene position: 3953280-3952171 (Counterclockwise)
Preceding gene: 157963042
Following gene: 157963040
Centisome position: 76.4
GC content: 41.35
Gene sequence:
>1110_bases ATGGATTTAGTCAATAATCGTTTATCTATTCAGTACGATGAGCAGTTTTGGTTAATCGACGTTACACATCCTAGCTCTCC AGAGGTGATTGGCAATAAAGAAGTACCAGCATTAAGCCACTCTAAAGATGTAAAAGTGTTAGGCGATACCTTAATCGCTG CGCGAGATGGTCAGCTTAAGAAGTATCAGATAAATATTGCACCAGTCATTACGGCTTCTCTCTTAACAGTCAATGAAGAT GAAACGCTAATACAGGAGCTCCCAGTAAGTACTTGGCACGCAGGCGTATTAACTTTTGAAATATTGACGCAGGCTTCGAA GGGGACTGTTACTGTTGACCACGAAGGCGTTGTAAATTTCTCCCCTAACAAAGATGAGTTCGGTGAAGATCAATTTACTG TTAGAGTGGCTGACAATCATGGAAGGAGCTCTGAAAAAGAGATTCGGATTGATATCCTTCCAATTAACGACGCACCTAGA GTATTAGATCAGACATTTGTTACGAATGAGGATGTTGAACTCCGTAGCAGTTTAATAGTTGCAGAAGTTGATAGCGATGA ACTCCAATTCGTGTTGGTTACAGATACGCTAAACGGGGTGGTCACGCTTAGTGAGTCAGGTGAATATTCTTATCAAGCGA CAGCTAATTTTAATGGTACAGATAGTTTTACTTTTAGTGTGACTGATGGCGTTAATGCTGCCGTTGAAGCGAGTGTTACC ATAAACATTTTAGCGGTTAATGATGCGCCTGTTGCAAGTCATCAGTCGTTAAACATCGGATACAATCGTGAGGTCGCGAG TCGATTATCAGCTTTCGATGTTGATGAAGATGAATTGATGTTTGAAGTCGTTACCAATGTTAGTCATGGGGAATTAGCCT TAAATGATGATGGTAGCTTTATCTATAACCCAAAAACTGATTTTAGCGGTAATGACAGCTTTACCTATCGGGTAACTGAT ACCGCAGGAAGCACAAGTGAAGCCGTTGTTAGTATAACAGTTAGTGCAAAACCGAAAGAGTCGACCTCAGATTCATCGGG GGGCTCTCTTGGGTACTTGTGCTTACTCTATTTGATGCTTACGGTTGGATATCGCCAAAGATTTCGATAG
Upstream 100 bases:
>100_bases CCTAAATATTTGGGATCTATCAAACTTAGACTCCCCCTTATTAGCTGCAAGTTACTCTGAGTTTTCAGGAGCCTGAATAG GCTCATCAAATCCAACACAT
Downstream 100 bases:
>100_bases TTTGGTAGTGAAAAAAAACGCAGCGATTAGGCTGCGTTTTTTTATTGGTCATCATAAATACGCCCTCTCATGAATAAAGT GCCTTGGCAAAGACCATTTT
Product: outer membrane adhesin-like protein
Products: NA
Alternate protein names: Proprotein Convertase P; Outer Membrane Adhesin Like Protein; Fibronectin Type III Domain-Containing Protein; Cadherin; Hyalin Domain-Containing Protein; Rhizobiocin/RTX xin; Vcbs Repeat Domain Protein; RTX xin; VCBS Protein; Large Exoprotein; Ig Domain Protein; Ig Family Protein; NHL Repeat-Containing Protein; RTX xin Exported Protein; Type 1 Secretion C-Terminal Target Domain Protein; Cysteine-Rich Repeat-Containing Protein; Peptidyl-Prolyl Cis-Trans Isomerase Cyclophilin Type; VBCS Repeat-Containing Protein; Outer Membrane Adhesin-Like Protein; Type 1 Secretion Target Domain-Containing Protein; Cell-Adhesion Protein; Fibronectin Type III Domain Protein; Surface-Associated Protein CshA; Ompa Domain Protein; YVTN Beta-Propeller Repeat-Containing Protein; Hemolysin; FG-GAP Repeat-Containing Protein; LVIVD Repeat Protein; Type V Secretory Pathway Adhesin AidA; Rhs Family Protein; Cysteine-Rich Repeat Protein; Hemagglutinin/Hemolysin-Related Protein; Copper Amine Oxidase Domain Protein; Conserved Repeat Domain Protein; Parallel Beta-Helix Repeat Protein; Type I Secretion Target Repeat Protein; Type 1 Secretion Target Domain Protein; FG-GAP Repeat Domain Protein; GLUG Domain-Containing Protein; Parallel Beta-Helix Repeat-Containing Protein; Immunoglobulin I-Set Domain-Containing Protein; Type V Secretory Pathway; Dystroglycan-Type Cadherin Domain-Containing Protein
Number of amino acids: Translated: 369; Mature: 369
Protein sequence:
>369_residues MDLVNNRLSIQYDEQFWLIDVTHPSSPEVIGNKEVPALSHSKDVKVLGDTLIAARDGQLKKYQINIAPVITASLLTVNED ETLIQELPVSTWHAGVLTFEILTQASKGTVTVDHEGVVNFSPNKDEFGEDQFTVRVADNHGRSSEKEIRIDILPINDAPR VLDQTFVTNEDVELRSSLIVAEVDSDELQFVLVTDTLNGVVTLSESGEYSYQATANFNGTDSFTFSVTDGVNAAVEASVT INILAVNDAPVASHQSLNIGYNREVASRLSAFDVDEDELMFEVVTNVSHGELALNDDGSFIYNPKTDFSGNDSFTYRVTD TAGSTSEAVVSITVSAKPKESTSDSSGGSLGYLCLLYLMLTVGYRQRFR
Sequences:
>Translated_369_residues MDLVNNRLSIQYDEQFWLIDVTHPSSPEVIGNKEVPALSHSKDVKVLGDTLIAARDGQLKKYQINIAPVITASLLTVNED ETLIQELPVSTWHAGVLTFEILTQASKGTVTVDHEGVVNFSPNKDEFGEDQFTVRVADNHGRSSEKEIRIDILPINDAPR VLDQTFVTNEDVELRSSLIVAEVDSDELQFVLVTDTLNGVVTLSESGEYSYQATANFNGTDSFTFSVTDGVNAAVEASVT INILAVNDAPVASHQSLNIGYNREVASRLSAFDVDEDELMFEVVTNVSHGELALNDDGSFIYNPKTDFSGNDSFTYRVTD TAGSTSEAVVSITVSAKPKESTSDSSGGSLGYLCLLYLMLTVGYRQRFR >Mature_369_residues MDLVNNRLSIQYDEQFWLIDVTHPSSPEVIGNKEVPALSHSKDVKVLGDTLIAARDGQLKKYQINIAPVITASLLTVNED ETLIQELPVSTWHAGVLTFEILTQASKGTVTVDHEGVVNFSPNKDEFGEDQFTVRVADNHGRSSEKEIRIDILPINDAPR VLDQTFVTNEDVELRSSLIVAEVDSDELQFVLVTDTLNGVVTLSESGEYSYQATANFNGTDSFTFSVTDGVNAAVEASVT INILAVNDAPVASHQSLNIGYNREVASRLSAFDVDEDELMFEVVTNVSHGELALNDDGSFIYNPKTDFSGNDSFTYRVTD TAGSTSEAVVSITVSAKPKESTSDSSGGSLGYLCLLYLMLTVGYRQRFR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40308; Mature: 40308
Theoretical pI: Translated: 4.09; Mature: 4.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLVNNRLSIQYDEQFWLIDVTHPSSPEVIGNKEVPALSHSKDVKVLGDTLIAARDGQLK CCCCCCEEEEEECCEEEEEEECCCCCCCEECCCCCCCCCCCCCEEEECCEEEEECCCCEE KYQINIAPVITASLLTVNEDETLIQELPVSTWHAGVLTFEILTQASKGTVTVDHEGVVNF EEEEEEEEEEEEEEEEECCCHHHHHHCCCCCHHHHEEEEEEECCCCCCEEEEECCCEEEE SPNKDEFGEDQFTVRVADNHGRSSEKEIRIDILPINDAPRVLDQTFVTNEDVELRSSLIV CCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCEECCEEEE AEVDSDELQFVLVTDTLNGVVTLSESGEYSYQATANFNGTDSFTFSVTDGVNAAVEASVT EEECCCCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEEEE INILAVNDAPVASHQSLNIGYNREVASRLSAFDVDEDELMFEVVTNVSHGELALNDDGSF EEEEEECCCCCCCCCEEECCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCE IYNPKTDFSGNDSFTYRVTDTAGSTSEAVVSITVSAKPKESTSDSSGGSLGYLCLLYLML EECCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH TVGYRQRFR HHHHHHHCC >Mature Secondary Structure MDLVNNRLSIQYDEQFWLIDVTHPSSPEVIGNKEVPALSHSKDVKVLGDTLIAARDGQLK CCCCCCEEEEEECCEEEEEEECCCCCCCEECCCCCCCCCCCCCEEEECCEEEEECCCCEE KYQINIAPVITASLLTVNEDETLIQELPVSTWHAGVLTFEILTQASKGTVTVDHEGVVNF EEEEEEEEEEEEEEEEECCCHHHHHHCCCCCHHHHEEEEEEECCCCCCEEEEECCCEEEE SPNKDEFGEDQFTVRVADNHGRSSEKEIRIDILPINDAPRVLDQTFVTNEDVELRSSLIV CCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCEECCEEEE AEVDSDELQFVLVTDTLNGVVTLSESGEYSYQATANFNGTDSFTFSVTDGVNAAVEASVT EEECCCCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEEEE INILAVNDAPVASHQSLNIGYNREVASRLSAFDVDEDELMFEVVTNVSHGELALNDDGSF EEEEEECCCCCCCCCEEECCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCE IYNPKTDFSGNDSFTYRVTDTAGSTSEAVVSITVSAKPKESTSDSSGGSLGYLCLLYLML EECCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH TVGYRQRFR HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA