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The map label for this gene is ydaM [H]

Identifier: 157963040

GI number: 157963040

Start: 3950863

End: 3951894

Strand: Reverse

Name: ydaM [H]

Synonym: Spea_3223

Alternate gene names: 157963040

Gene position: 3951894-3950863 (Counterclockwise)

Preceding gene: 157963041

Following gene: 157963038

Centisome position: 76.37

GC content: 42.05

Gene sequence:

>1032_bases
ATGGATAGATTAAGCTTTTTGGGTAAACCTCAGGACGAAGGTCTTTTTGACCTATATAGTCGTCAGAGAGTACTGATATT
TATTTTGCTTGTGACACTGATGACTTTTCTACCTCTGAGCATCAAGAATTTTGTGATAGGAGAGACCTTGCTCGGCTTTT
CTTTACTTGCCTTTGAGTTAAGTTTGGTCATTGAAGTCTTTGGTATATTGCGACTAAATCGCAATATATTGGGTTATAGA
CCACCACTTTTTTTGCTCGCCATCTCTATGGTGTTAAGCATCCATGCCTTTGGTACGCTGGCAACATACTGGGTGTTTCC
TGTTGTCACAAGCATCGTACTATTAGTCCCTAAAAAAATGGCCATGTTGGCTAATGGGGGAATTATCTTAACGAGTGCTG
TAGCGGCACTTCCGCATCAAGAACCCACGGTGACACTGCGATTTACTCTTGCGCTGCTTTTCTGTGTATCAATTGCTCAT
TATGTTATTGAAACGGTGAGAAAGCTGCAGGCCAATTTAAGTTATCTGTCAACGCGAGACTCATTAACTGGCGCACTCAA
TCGTCATCAGTTGGACGCATCTTTAATAGCGGCGAGTGAAAAAGCCAAGATGGATCAAGCCACCTGTATTGCGGCAATAG
ATATTGATTATTTCAAGGATGTGAATGATTTACATGGCCACGATATGGGGGACCAAGTTATTAAAACAGTGGTTAAGCTA
ATTAACAGCCATTGTAGGAAGACTGACTTACTATTTCGTTTAGGTGGTGATGAGTTCCTACTCTTATTTGATAATACTAA
TGCTGAAAGCGCGTTGAAAATCACGCGTAATATCGGTCAGAAAGTGGCTGAAGGCATTGTGGAGGCATACCCTGAAGTCG
ACAAGGTCACACTCAGCACTGGCATCGCAGAGTCAATAGCGAATGAAGAGGTTGAAGCTTGGGTCAAACGTGCAGATATG
GCGTTGTATAAAGCTAAGTTAGCGGGGAGAAATCAGGTGAAAGTTAATAATCCGAGTGACCTTTATGCTTAA

Upstream 100 bases:

>100_bases
ATTGTTAGCGTGTTTACTTGTTTTTATTGCTAAGTGCAGTACTTTTTAAATAGGTGTCTTTCATCCACTACCTGTTCTAT
TTTCAATAAAAAGGGGCACT

Downstream 100 bases:

>100_bases
TGTAATAGACAGTTTAGTGGCTTATAACTCAAAGAATATAAGCCACAACTTACTATTGTGGTGGCTGAGTTTTGAACTGT
GGCAGTGATGCGTTAAACAG

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MDRLSFLGKPQDEGLFDLYSRQRVLIFILLVTLMTFLPLSIKNFVIGETLLGFSLLAFELSLVIEVFGILRLNRNILGYR
PPLFLLAISMVLSIHAFGTLATYWVFPVVTSIVLLVPKKMAMLANGGIILTSAVAALPHQEPTVTLRFTLALLFCVSIAH
YVIETVRKLQANLSYLSTRDSLTGALNRHQLDASLIAASEKAKMDQATCIAAIDIDYFKDVNDLHGHDMGDQVIKTVVKL
INSHCRKTDLLFRLGGDEFLLLFDNTNAESALKITRNIGQKVAEGIVEAYPEVDKVTLSTGIAESIANEEVEAWVKRADM
ALYKAKLAGRNQVKVNNPSDLYA

Sequences:

>Translated_343_residues
MDRLSFLGKPQDEGLFDLYSRQRVLIFILLVTLMTFLPLSIKNFVIGETLLGFSLLAFELSLVIEVFGILRLNRNILGYR
PPLFLLAISMVLSIHAFGTLATYWVFPVVTSIVLLVPKKMAMLANGGIILTSAVAALPHQEPTVTLRFTLALLFCVSIAH
YVIETVRKLQANLSYLSTRDSLTGALNRHQLDASLIAASEKAKMDQATCIAAIDIDYFKDVNDLHGHDMGDQVIKTVVKL
INSHCRKTDLLFRLGGDEFLLLFDNTNAESALKITRNIGQKVAEGIVEAYPEVDKVTLSTGIAESIANEEVEAWVKRADM
ALYKAKLAGRNQVKVNNPSDLYA
>Mature_343_residues
MDRLSFLGKPQDEGLFDLYSRQRVLIFILLVTLMTFLPLSIKNFVIGETLLGFSLLAFELSLVIEVFGILRLNRNILGYR
PPLFLLAISMVLSIHAFGTLATYWVFPVVTSIVLLVPKKMAMLANGGIILTSAVAALPHQEPTVTLRFTLALLFCVSIAH
YVIETVRKLQANLSYLSTRDSLTGALNRHQLDASLIAASEKAKMDQATCIAAIDIDYFKDVNDLHGHDMGDQVIKTVVKL
INSHCRKTDLLFRLGGDEFLLLFDNTNAESALKITRNIGQKVAEGIVEAYPEVDKVTLSTGIAESIANEEVEAWVKRADM
ALYKAKLAGRNQVKVNNPSDLYA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=187, Percent_Identity=36.3636363636364, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1786584, Length=177, Percent_Identity=35.5932203389831, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=39.7590361445783, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1788381, Length=179, Percent_Identity=36.3128491620112, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI145693134, Length=128, Percent_Identity=33.59375, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787541, Length=178, Percent_Identity=34.8314606741573, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87082007, Length=193, Percent_Identity=30.0518134715026, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=31.055900621118, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1787056, Length=157, Percent_Identity=33.7579617834395, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788085, Length=188, Percent_Identity=30.8510638297872, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787802, Length=183, Percent_Identity=25.6830601092896, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87081974, Length=180, Percent_Identity=28.3333333333333, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081977, Length=199, Percent_Identity=32.1608040201005, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 37971; Mature: 37971

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLSFLGKPQDEGLFDLYSRQRVLIFILLVTLMTFLPLSIKNFVIGETLLGFSLLAFEL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLVIEVFGILRLNRNILGYRPPLFLLAISMVLSIHAFGTLATYWVFPVVTSIVLLVPKKM
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMLANGGIILTSAVAALPHQEPTVTLRFTLALLFCVSIAHYVIETVRKLQANLSYLSTRD
HHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLTGALNRHQLDASLIAASEKAKMDQATCIAAIDIDYFKDVNDLHGHDMGDQVIKTVVKL
HHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEEHHHHHCCHHHCCCCCHHHHHHHHHHH
INSHCRKTDLLFRLGGDEFLLLFDNTNAESALKITRNIGQKVAEGIVEAYPEVDKVTLST
HHHHHHHHHHHEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
GIAESIANEEVEAWVKRADMALYKAKLAGRNQVKVNNPSDLYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
>Mature Secondary Structure
MDRLSFLGKPQDEGLFDLYSRQRVLIFILLVTLMTFLPLSIKNFVIGETLLGFSLLAFEL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLVIEVFGILRLNRNILGYRPPLFLLAISMVLSIHAFGTLATYWVFPVVTSIVLLVPKKM
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMLANGGIILTSAVAALPHQEPTVTLRFTLALLFCVSIAHYVIETVRKLQANLSYLSTRD
HHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLTGALNRHQLDASLIAASEKAKMDQATCIAAIDIDYFKDVNDLHGHDMGDQVIKTVVKL
HHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEEHHHHHCCHHHCCCCCHHHHHHHHHHH
INSHCRKTDLLFRLGGDEFLLLFDNTNAESALKITRNIGQKVAEGIVEAYPEVDKVTLST
HHHHHHHHHHHEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
GIAESIANEEVEAWVKRADMALYKAKLAGRNQVKVNNPSDLYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]