| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157962828
Identifier: 157962828
GI number: 157962828
Start: 3689943
End: 3690785
Strand: Reverse
Name: 157962828
Synonym: Spea_3010
Alternate gene names: NA
Gene position: 3690785-3689943 (Counterclockwise)
Preceding gene: 157962830
Following gene: 157962827
Centisome position: 71.33
GC content: 46.03
Gene sequence:
>843_bases ATGTCTACAGAGCATCAAGTATTAGTTGGTTTGTTAAAAAAATTAAAGTCCGACGCCTTAGTTTTACCTACATTGCCAGA GGTTGCGATGCGGGTGCAGGAGGTGGTGGGTCAAGAAGATGCCAGCCTAAAAGATGTTGCTAGTATTATTGGTCAAGATG CGGCTATTTCAGCTAGGGTCATCCGTATCGCGAATAGCGCCATGTACAGTCGGGGGATCCCTGCTGATAACGTCAATGCG GCCATAAACCGTATTGGCTTGACTCAGATTAAATCCATTGTGACTTCTATTGCGATGGAGCAGCTGTTTATCTCTACCAA CCAAATGGTTTGGGAGGTAATGGATGAGGTATGGAGTGCATCTATCGACGTGACCTCTGCCGCTTGTGCCATGCTACAGA TTTATAATAAGAAGCTCCCAGAGAGTAAGCTTAACTTTGACACTATGACGCTTGCTGGCCTGGTGCATAATATCGGTGCC TTGCCAGTGTTGACAGAAGCTGAAGCTCAGCCTGAACTCTTTGATAGCATAGATCTATTACGTGCTTTAGTTAAGAAGTT ACAAGGCCCATTAGGGCGCGCCGTGTTAAAGAGCTGGGAGTTTTCGCCAGATGTGATGCAAGTGGTAGAACGTTGGGCAG ATCTAACCTATACCTCGGAACAAGTGAGTTACCTAGACTTTATTCGCGCGGCGGCTTTCTATACCGGAGAGTTAAGGGCG GGAGACGATTTAGAACAAAGGATGACAGCCTTTATCGAGCGTGGTTTACCTGTATCGGCTGAAGAATTAGCGAGTGATGC ATTCCAAGAGGCTTATCAATCTATCAAGGCAAGTTACGAATAA
Upstream 100 bases:
>100_bases TTAAGTATTGACCCATAAATAGCATTTTGCACGTACCTCAAAGCGTTCAACTGTTATACTCGATTTGCTGCAAATTAATA CGAGTTATAAGGGAGTTGAG
Downstream 100 bases:
>100_bases TTTAGATGTTTGAATAGCGATGCTATGAAACTTAAACGATAGTGTTTGCTGGCGTAAGGACTAGCAGGCACTATAGTTTA TAACAGAATAAATTGAGATT
Product: putative signal transduction protein
Products: NA
Alternate protein names: Metal Dependent Phosphohydrolase; HDOD Domain Family; Sensor Histidine Kinase; Cytoplasmic Protein; Metal-Dependent Phosphohydrolase; HD Domain-Containing Protein; Histidine Kinase; HDIG Domain-Containing Protein; Diguanylate Cyclase; Metal-Dependent Phosphoesterase; Metal-Dependent Hydrolase HDOD; Fis Family Transcriptional Regulator; Hdod Domain Family Protein
Number of amino acids: Translated: 280; Mature: 279
Protein sequence:
>280_residues MSTEHQVLVGLLKKLKSDALVLPTLPEVAMRVQEVVGQEDASLKDVASIIGQDAAISARVIRIANSAMYSRGIPADNVNA AINRIGLTQIKSIVTSIAMEQLFISTNQMVWEVMDEVWSASIDVTSAACAMLQIYNKKLPESKLNFDTMTLAGLVHNIGA LPVLTEAEAQPELFDSIDLLRALVKKLQGPLGRAVLKSWEFSPDVMQVVERWADLTYTSEQVSYLDFIRAAAFYTGELRA GDDLEQRMTAFIERGLPVSAEELASDAFQEAYQSIKASYE
Sequences:
>Translated_280_residues MSTEHQVLVGLLKKLKSDALVLPTLPEVAMRVQEVVGQEDASLKDVASIIGQDAAISARVIRIANSAMYSRGIPADNVNA AINRIGLTQIKSIVTSIAMEQLFISTNQMVWEVMDEVWSASIDVTSAACAMLQIYNKKLPESKLNFDTMTLAGLVHNIGA LPVLTEAEAQPELFDSIDLLRALVKKLQGPLGRAVLKSWEFSPDVMQVVERWADLTYTSEQVSYLDFIRAAAFYTGELRA GDDLEQRMTAFIERGLPVSAEELASDAFQEAYQSIKASYE >Mature_279_residues STEHQVLVGLLKKLKSDALVLPTLPEVAMRVQEVVGQEDASLKDVASIIGQDAAISARVIRIANSAMYSRGIPADNVNAA INRIGLTQIKSIVTSIAMEQLFISTNQMVWEVMDEVWSASIDVTSAACAMLQIYNKKLPESKLNFDTMTLAGLVHNIGAL PVLTEAEAQPELFDSIDLLRALVKKLQGPLGRAVLKSWEFSPDVMQVVERWADLTYTSEQVSYLDFIRAAAFYTGELRAG DDLEQRMTAFIERGLPVSAEELASDAFQEAYQSIKASYE
Specific function: Unknown
COG id: COG1639
COG function: function code T; Predicted signal transduction protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30789; Mature: 30657
Theoretical pI: Translated: 4.40; Mature: 4.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTEHQVLVGLLKKLKSDALVLPTLPEVAMRVQEVVGQEDASLKDVASIIGQDAAISARV CCCHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH IRIANSAMYSRGIPADNVNAAINRIGLTQIKSIVTSIAMEQLFISTNQMVWEVMDEVWSA HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SIDVTSAACAMLQIYNKKLPESKLNFDTMTLAGLVHNIGALPVLTEAEAQPELFDSIDLL CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHH RALVKKLQGPLGRAVLKSWEFSPDVMQVVERWADLTYTSEQVSYLDFIRAAAFYTGELRA HHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC GDDLEQRMTAFIERGLPVSAEELASDAFQEAYQSIKASYE CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure STEHQVLVGLLKKLKSDALVLPTLPEVAMRVQEVVGQEDASLKDVASIIGQDAAISARV CCHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH IRIANSAMYSRGIPADNVNAAINRIGLTQIKSIVTSIAMEQLFISTNQMVWEVMDEVWSA HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SIDVTSAACAMLQIYNKKLPESKLNFDTMTLAGLVHNIGALPVLTEAEAQPELFDSIDLL CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHH RALVKKLQGPLGRAVLKSWEFSPDVMQVVERWADLTYTSEQVSYLDFIRAAAFYTGELRA HHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC GDDLEQRMTAFIERGLPVSAEELASDAFQEAYQSIKASYE CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA