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The map label for this gene is yciR [C]

Identifier: 157962827

GI number: 157962827

Start: 3688340

End: 3689818

Strand: Reverse

Name: yciR [C]

Synonym: Spea_3009

Alternate gene names: 157962827

Gene position: 3689818-3688340 (Counterclockwise)

Preceding gene: 157962828

Following gene: 157962825

Centisome position: 71.31

GC content: 44.29

Gene sequence:

>1479_bases
ATGGGCAGTTTTTGGATTATTTCCATTGTATGTTTGTTGCTACTGGTTTTGTTAGTATGCGCACTCTTGTGGCAGCTCAG
ACTGCGTCATCAGCTCAAACAGTTATTTGAGTTTCTTGACTTGAAGGGGATTAAGCTCCCTTCCAGTAACGGGTCATTAA
CGGCCAAACTCTCCAGCTTAAAAGATCTATTCAGTACACTCTATACCCAAAGCAAGCAATCAGAACGAGATAAGCTCACT
GAACTCGATAACCGTTTGAGCATGAAGCGTAAAATGGCCGATTTAATGCCATTAAATAATGGTAGCTTGGTATTACTCGA
TATTTATCGATTTCGATACGTAAACGATCTGTTTGGCTTTAACTTTGGCGACGAGCTACTTAAGCAGATGGCGGTGCGGG
TGAAAAGTCTAGCCGCGGAAGGTTCGTTAATTGCTAGGATGAATGAAGATGAATTTCTCATCTATTTCACTAGCGAAATG
ACGGAGCTACAACTGCAGCAGATCATCGATAAGTTACAACTACCCTATGACATTTTCGGCAGTATCATAACCACCAGAGT
GCAGATGGGGCACTTGGCACTAAAGCCTTTTCACAGTGATATTAGCACCATGCTGCGACGACTCGACTTGGCGCTAAAAA
AAGCTAAGACTCATGATGTGGCACTATCTGAATATCTGTTGGGTGATGATGCGGCGCAGCTTAGAGAAGTGTCGATTATT
AATAGCCTTGCTAAGGCACTGCGTGATGGCGAGCTTTATATGGTGTATCAGCCAAAACAAAGCCTCCCCAAAGGGGGCTG
TGAGCAAGTAGAGGCCTTAATGCGATGGCAGCATCCTTTATTAGGCAATATATCTCCTGCTGAATTTATCCCCTTAGCCG
AATATTCTGGCATGATCGATATCGTCAGCCAATGGGCCTTAGATCAAGTATTTGTACAGCAAGCAGTATGGCGCAAAAGT
GATATTAAGCTTCAGGTGGCGGTAAATCTATCGACTCAAGATCTGCGTAACGCCTCTTTGATTGCTGGCATAGAAGCTAG
GCTTGAGCAATACCAATTAAAGGCGAGTGCCATCTCGATAGAGATCACCGAAAGTAAGTTGATGCAAGATCTTGAGGGGG
CGGTTGAAACGATTAAGCGATTGCGCTGCCTCGGAGTCGATGTCGCTATCGATGATTTTGGGACTGGTCATTCTTCTTTG
GCTTACCTTAAATATTTGCCTGTCGATGAGGTTAAGATTGATAAAGCCTTCTTAGAAGATCTTGAAGTCGATGCTAGGGC
TCGACACATAATGGATACCAGTATTCGATTGGCGAAAGGTCTTGGCTTTAAGGTGACAGTCGAAGGGGTGGAAACTGAGG
ATGTGTTACAGTTATTGCTCGATATGGGCGTGGATAAAATTCAAGGTGATATCTTCTCTAAGCCCTTAACAGCGAAAGAG
CTGGGAGCCCGCTGGTTGAAAATAAGTCAGGCAGGCTAA

Upstream 100 bases:

>100_bases
ATGAAACTTAAACGATAGTGTTTGCTGGCGTAAGGACTAGCAGGCACTATAGTTTATAACAGAATAAATTGAGATTTTAT
AACGGTAAAAGTACTCATTG

Downstream 100 bases:

>100_bases
GACCAGAATAAGAGAAAAGGTAAGTCGGTTATGTCGATAATCTAGCAATTTGAGACTTACCTTTTTCATCAGTATTGGTA
ACGCTTTTATCAAAGCCTAA

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 492; Mature: 491

Protein sequence:

>492_residues
MGSFWIISIVCLLLLVLLVCALLWQLRLRHQLKQLFEFLDLKGIKLPSSNGSLTAKLSSLKDLFSTLYTQSKQSERDKLT
ELDNRLSMKRKMADLMPLNNGSLVLLDIYRFRYVNDLFGFNFGDELLKQMAVRVKSLAAEGSLIARMNEDEFLIYFTSEM
TELQLQQIIDKLQLPYDIFGSIITTRVQMGHLALKPFHSDISTMLRRLDLALKKAKTHDVALSEYLLGDDAAQLREVSII
NSLAKALRDGELYMVYQPKQSLPKGGCEQVEALMRWQHPLLGNISPAEFIPLAEYSGMIDIVSQWALDQVFVQQAVWRKS
DIKLQVAVNLSTQDLRNASLIAGIEARLEQYQLKASAISIEITESKLMQDLEGAVETIKRLRCLGVDVAIDDFGTGHSSL
AYLKYLPVDEVKIDKAFLEDLEVDARARHIMDTSIRLAKGLGFKVTVEGVETEDVLQLLLDMGVDKIQGDIFSKPLTAKE
LGARWLKISQAG

Sequences:

>Translated_492_residues
MGSFWIISIVCLLLLVLLVCALLWQLRLRHQLKQLFEFLDLKGIKLPSSNGSLTAKLSSLKDLFSTLYTQSKQSERDKLT
ELDNRLSMKRKMADLMPLNNGSLVLLDIYRFRYVNDLFGFNFGDELLKQMAVRVKSLAAEGSLIARMNEDEFLIYFTSEM
TELQLQQIIDKLQLPYDIFGSIITTRVQMGHLALKPFHSDISTMLRRLDLALKKAKTHDVALSEYLLGDDAAQLREVSII
NSLAKALRDGELYMVYQPKQSLPKGGCEQVEALMRWQHPLLGNISPAEFIPLAEYSGMIDIVSQWALDQVFVQQAVWRKS
DIKLQVAVNLSTQDLRNASLIAGIEARLEQYQLKASAISIEITESKLMQDLEGAVETIKRLRCLGVDVAIDDFGTGHSSL
AYLKYLPVDEVKIDKAFLEDLEVDARARHIMDTSIRLAKGLGFKVTVEGVETEDVLQLLLDMGVDKIQGDIFSKPLTAKE
LGARWLKISQAG
>Mature_491_residues
GSFWIISIVCLLLLVLLVCALLWQLRLRHQLKQLFEFLDLKGIKLPSSNGSLTAKLSSLKDLFSTLYTQSKQSERDKLTE
LDNRLSMKRKMADLMPLNNGSLVLLDIYRFRYVNDLFGFNFGDELLKQMAVRVKSLAAEGSLIARMNEDEFLIYFTSEMT
ELQLQQIIDKLQLPYDIFGSIITTRVQMGHLALKPFHSDISTMLRRLDLALKKAKTHDVALSEYLLGDDAAQLREVSIIN
SLAKALRDGELYMVYQPKQSLPKGGCEQVEALMRWQHPLLGNISPAEFIPLAEYSGMIDIVSQWALDQVFVQQAVWRKSD
IKLQVAVNLSTQDLRNASLIAGIEARLEQYQLKASAISIEITESKLMQDLEGAVETIKRLRCLGVDVAIDDFGTGHSSLA
YLKYLPVDEVKIDKAFLEDLEVDARARHIMDTSIRLAKGLGFKVTVEGVETEDVLQLLLDMGVDKIQGDIFSKPLTAKEL
GARWLKISQAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=421, Percent_Identity=32.0665083135392, Blast_Score=206, Evalue=3e-54,
Organism=Escherichia coli, GI87081921, Length=430, Percent_Identity=27.6744186046512, Blast_Score=159, Evalue=4e-40,
Organism=Escherichia coli, GI1790496, Length=245, Percent_Identity=37.1428571428571, Blast_Score=153, Evalue=3e-38,
Organism=Escherichia coli, GI87081845, Length=240, Percent_Identity=33.3333333333333, Blast_Score=131, Evalue=8e-32,
Organism=Escherichia coli, GI1788502, Length=246, Percent_Identity=33.3333333333333, Blast_Score=128, Evalue=7e-31,
Organism=Escherichia coli, GI1787055, Length=492, Percent_Identity=26.0162601626016, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=33.469387755102, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI226510982, Length=253, Percent_Identity=33.596837944664, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1786507, Length=253, Percent_Identity=30.8300395256917, Blast_Score=122, Evalue=7e-29,
Organism=Escherichia coli, GI87081980, Length=249, Percent_Identity=32.1285140562249, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788849, Length=240, Percent_Identity=29.5833333333333, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI87082096, Length=391, Percent_Identity=23.7851662404092, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1787410, Length=128, Percent_Identity=30.46875, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 55460; Mature: 55328

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSFWIISIVCLLLLVLLVCALLWQLRLRHQLKQLFEFLDLKGIKLPSSNGSLTAKLSSL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHH
KDLFSTLYTQSKQSERDKLTELDNRLSMKRKMADLMPLNNGSLVLLDIYRFRYVNDLFGF
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHCC
NFGDELLKQMAVRVKSLAAEGSLIARMNEDEFLIYFTSEMTELQLQQIIDKLQLPYDIFG
CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCHHHHH
SIITTRVQMGHLALKPFHSDISTMLRRLDLALKKAKTHDVALSEYLLGDDAAQLREVSII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
NSLAKALRDGELYMVYQPKQSLPKGGCEQVEALMRWQHPLLGNISPAEFIPLAEYSGMID
HHHHHHHCCCCEEEEECCHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHCCCHHHHCCHHH
IVSQWALDQVFVQQAVWRKSDIKLQVAVNLSTQDLRNASLIAGIEARLEQYQLKASAISI
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHCCHHHHHHHHHHHHHHHHHHHEEEE
EITESKLMQDLEGAVETIKRLRCLGVDVAIDDFGTGHSSLAYLKYLPVDEVKIDKAFLED
EEHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHEEECCCCHHHHHHHHHHH
LEVDARARHIMDTSIRLAKGLGFKVTVEGVETEDVLQLLLDMGVDKIQGDIFSKPLTAKE
HCHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCHHHHCCHHHCCCCCHHH
LGARWLKISQAG
HCCHHHEEECCC
>Mature Secondary Structure 
GSFWIISIVCLLLLVLLVCALLWQLRLRHQLKQLFEFLDLKGIKLPSSNGSLTAKLSSL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHH
KDLFSTLYTQSKQSERDKLTELDNRLSMKRKMADLMPLNNGSLVLLDIYRFRYVNDLFGF
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHCC
NFGDELLKQMAVRVKSLAAEGSLIARMNEDEFLIYFTSEMTELQLQQIIDKLQLPYDIFG
CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCHHHHH
SIITTRVQMGHLALKPFHSDISTMLRRLDLALKKAKTHDVALSEYLLGDDAAQLREVSII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
NSLAKALRDGELYMVYQPKQSLPKGGCEQVEALMRWQHPLLGNISPAEFIPLAEYSGMID
HHHHHHHCCCCEEEEECCHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHCCCHHHHCCHHH
IVSQWALDQVFVQQAVWRKSDIKLQVAVNLSTQDLRNASLIAGIEARLEQYQLKASAISI
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHCCHHHHHHHHHHHHHHHHHHHEEEE
EITESKLMQDLEGAVETIKRLRCLGVDVAIDDFGTGHSSLAYLKYLPVDEVKIDKAFLED
EEHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHEEECCCCHHHHHHHHHHH
LEVDARARHIMDTSIRLAKGLGFKVTVEGVETEDVLQLLLDMGVDKIQGDIFSKPLTAKE
HCHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCHHHHCCHHHCCCCCHHH
LGARWLKISQAG
HCCHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]