| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157962655
Identifier: 157962655
GI number: 157962655
Start: 3460066
End: 3461265
Strand: Reverse
Name: 157962655
Synonym: Spea_2835
Alternate gene names: NA
Gene position: 3461265-3460066 (Counterclockwise)
Preceding gene: 157962658
Following gene: 157962646
Centisome position: 66.89
GC content: 38.58
Gene sequence:
>1200_bases ATGTCGAAACTTATCCTTGGCTTTACAATTTTATATTACTTGTTTGTTAGTTGCGTACTTGCTCACGAAATTGAACAGAG CTCGACATCACTAGATTTAGTTCATACCTTCACCTTAGAGGATGGTATCTTTAATAGCGAAACTGGCACTATTGAGCGCT ATACTGCTCACTATACCAATATTGCAATTCCTAAAAGTCTTGGCGGCATACCGGTTATCGCTATCGGGGCGAACTCATTT AGCCAGTCAGGTTTAACAAGCGTGTCGCTCCCTATAACTATTGGTTCTATTGGGATGAATGCGTTTACGCAAAATAAGAT CGTGAGTCTAATCATTCCTGACTCTGTCATGTATATAGGTTCTGGAGCCTTTTCAAGAAATGGATTGGAGAATGTGACCA TCTCTAACTCCATAACTACCATCAGAAAGTGGACGTTTTCAGAAAATGCGTTAACAAACGTTAGGATCCCTGACTCGGTA ATTGATATTGAAAATTGGGCATTCAGGAATAATGATTTAATAAAATTGCACATTCCAAATGGCGTCGTTTCAATTGGTGG AGGATCGTTTGCACATAATAAGTTAACCGAACTCACTTTTTCTGACTCTGTCACTTCCATAGGTGGTAGTGCGTTTACTA ATAATGCAATAAAAAAGGTCGATATCCCAAGTTCAGTTACTTTTCTCGGTAATGGGGCCTTCTACGCCAATTCGTTGACA AGTGTGATAATACCAAACTCCATCACATCGATTGGTAATGAGGTATTTTATAGCAATAAATTAAACAGTGTGACAATCCC TGATTCGGTCACCTCAATTGGAAGAAGTGCATTTGCAGTTAATTTAATTACATCTATTGACTTGCCAAAGACTCTTACTT CATTAGGTGATAGTGCTTTTTCATCCAATGCCTTGACAGCGGTGAGCATACCAAACTCTATCTCTACCATTGGTGAGTTT GTGTTTTTTAAGAATTCCTTAACAACGCTAACCATCCCTAACTCAGTGGCTTCGATTGGTTCAAGTGCATTTGAAAAAAA CGCACTTACCAAAGTAACCATCCCTAATTCAGTGACTTCGATTGCTTCTGGTGCATTTGAGAAAAACGCAATTACCAACG TAACTATTCCGTTATCGGTTACTCAATTAGATGAAAAAGCATTCGATAGGAAGGTTCAAATAACAAAGTCCAACGAGTAA
Upstream 100 bases:
>100_bases AAAGTGAAAACTAGCATTATCTTGTTGATTTATAATAGAGGGCTTAATATATCCCTCCAATCCAATTATTTTACAGCTTT TGTATTTATAGCAGGTAATT
Downstream 100 bases:
>100_bases AAATAACGGGGCCATATTTGGTCCCCGTATTGCCAGACAAGGGTGGTATTACTGGTCATATATGCTTTAAGACGATGACT TTTATCAAGGCTTATCATGG
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: Cell Surface Leucine-Rich Repeat-Containing Protein; Surface Protein; Surface Antigen BspA; Fibronectin Type III Domain-Containing Protein; Type 1 Dockerin; Surface Antigen BspA Like Protein; TPR Repeat-Containing Protein; Adhesion Exoprotein; Leucine-Rich Repeat-Containing Protein; Ig Domain-Containing Domain-Containing Protein; Ig Domain Domain Protein; Cell Surface Antigen; Lipoprotein; Surface Antigen BspA-Like Protein; Peptidoglycan Bound Protein; SEC-C Motif Domain Protein; Surface Antigen; Fibronectin Type III Domain Protein; Leucine Rich Repeat Domain-Containing Protein; Leucine Rich Repeat Domain Protein; N-Acetylmuramoyl-L-Alanine Amidase; Surface-Anchored Antigen BspA-Like Protein; Subtilisin-Like Serine Protease; Ig Domain Protein; Transglutaminase Domain-Containing Protein; Ig Domain-Containing Protein
Number of amino acids: Translated: 399; Mature: 398
Protein sequence:
>399_residues MSKLILGFTILYYLFVSCVLAHEIEQSSTSLDLVHTFTLEDGIFNSETGTIERYTAHYTNIAIPKSLGGIPVIAIGANSF SQSGLTSVSLPITIGSIGMNAFTQNKIVSLIIPDSVMYIGSGAFSRNGLENVTISNSITTIRKWTFSENALTNVRIPDSV IDIENWAFRNNDLIKLHIPNGVVSIGGGSFAHNKLTELTFSDSVTSIGGSAFTNNAIKKVDIPSSVTFLGNGAFYANSLT SVIIPNSITSIGNEVFYSNKLNSVTIPDSVTSIGRSAFAVNLITSIDLPKTLTSLGDSAFSSNALTAVSIPNSISTIGEF VFFKNSLTTLTIPNSVASIGSSAFEKNALTKVTIPNSVTSIASGAFEKNAITNVTIPLSVTQLDEKAFDRKVQITKSNE
Sequences:
>Translated_399_residues MSKLILGFTILYYLFVSCVLAHEIEQSSTSLDLVHTFTLEDGIFNSETGTIERYTAHYTNIAIPKSLGGIPVIAIGANSF SQSGLTSVSLPITIGSIGMNAFTQNKIVSLIIPDSVMYIGSGAFSRNGLENVTISNSITTIRKWTFSENALTNVRIPDSV IDIENWAFRNNDLIKLHIPNGVVSIGGGSFAHNKLTELTFSDSVTSIGGSAFTNNAIKKVDIPSSVTFLGNGAFYANSLT SVIIPNSITSIGNEVFYSNKLNSVTIPDSVTSIGRSAFAVNLITSIDLPKTLTSLGDSAFSSNALTAVSIPNSISTIGEF VFFKNSLTTLTIPNSVASIGSSAFEKNALTKVTIPNSVTSIASGAFEKNAITNVTIPLSVTQLDEKAFDRKVQITKSNE >Mature_398_residues SKLILGFTILYYLFVSCVLAHEIEQSSTSLDLVHTFTLEDGIFNSETGTIERYTAHYTNIAIPKSLGGIPVIAIGANSFS QSGLTSVSLPITIGSIGMNAFTQNKIVSLIIPDSVMYIGSGAFSRNGLENVTISNSITTIRKWTFSENALTNVRIPDSVI DIENWAFRNNDLIKLHIPNGVVSIGGGSFAHNKLTELTFSDSVTSIGGSAFTNNAIKKVDIPSSVTFLGNGAFYANSLTS VIIPNSITSIGNEVFYSNKLNSVTIPDSVTSIGRSAFAVNLITSIDLPKTLTSLGDSAFSSNALTAVSIPNSISTIGEFV FFKNSLTTLTIPNSVASIGSSAFEKNALTKVTIPNSVTSIASGAFEKNAITNVTIPLSVTQLDEKAFDRKVQITKSNE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42426; Mature: 42294
Theoretical pI: Translated: 6.03; Mature: 6.03
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKLILGFTILYYLFVSCVLAHEIEQSSTSLDLVHTFTLEDGIFNSETGTIERYTAHYTN CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEE IAIPKSLGGIPVIAIGANSFSQSGLTSVSLPITIGSIGMNAFTQNKIVSLIIPDSVMYIG EECCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEE SGAFSRNGLENVTISNSITTIRKWTFSENALTNVRIPDSVIDIENWAFRNNDLIKLHIPN CCCCCCCCCCCEEECCCEEEEEEEEECCCCEEEEECCCCEEECCCCEECCCCEEEEECCC GVVSIGGGSFAHNKLTELTFSDSVTSIGGSAFTNNAIKKVDIPSSVTFLGNGAFYANSLT CEEEECCCCCCCCCEEEEEECCCHHHCCCCHHCCCCEEEECCCCCEEEEECCEEEECCCE SVIIPNSITSIGNEVFYSNKLNSVTIPDSVTSIGRSAFAVNLITSIDLPKTLTSLGDSAF EEEECCCHHHHCCCEEECCCCCEEECCCHHHHHCCCEEEEEEEEECCCHHHHHHCCCCCC SSNALTAVSIPNSISTIGEFVFFKNSLTTLTIPNSVASIGSSAFEKNALTKVTIPNSVTS CCCCEEEEECCCHHHHHHHHEEEECCEEEEEECCHHHHHCCHHHHCCCEEEEECCCCHHH IASGAFEKNAITNVTIPLSVTQLDEKAFDRKVQITKSNE HHCCCCCCCCEEEEEEEEEEEHHHHHHCCCEEEEEECCC >Mature Secondary Structure SKLILGFTILYYLFVSCVLAHEIEQSSTSLDLVHTFTLEDGIFNSETGTIERYTAHYTN CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEE IAIPKSLGGIPVIAIGANSFSQSGLTSVSLPITIGSIGMNAFTQNKIVSLIIPDSVMYIG EECCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEE SGAFSRNGLENVTISNSITTIRKWTFSENALTNVRIPDSVIDIENWAFRNNDLIKLHIPN CCCCCCCCCCCEEECCCEEEEEEEEECCCCEEEEECCCCEEECCCCEECCCCEEEEECCC GVVSIGGGSFAHNKLTELTFSDSVTSIGGSAFTNNAIKKVDIPSSVTFLGNGAFYANSLT CEEEECCCCCCCCCEEEEEECCCHHHCCCCHHCCCCEEEECCCCCEEEEECCEEEECCCE SVIIPNSITSIGNEVFYSNKLNSVTIPDSVTSIGRSAFAVNLITSIDLPKTLTSLGDSAF EEEECCCHHHHCCCEEECCCCCEEECCCHHHHHCCCEEEEEEEEECCCHHHHHHCCCCCC SSNALTAVSIPNSISTIGEFVFFKNSLTTLTIPNSVASIGSSAFEKNALTKVTIPNSVTS CCCCEEEEECCCHHHHHHHHEEEECCEEEEEECCHHHHHCCHHHHCCCEEEEECCCCHHH IASGAFEKNAITNVTIPLSVTQLDEKAFDRKVQITKSNE HHCCCCCCCCEEEEEEEEEEEHHHHHHCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA