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The map label for this gene is ihfA [H]

Identifier: 157962289

GI number: 157962289

Start: 3010638

End: 3010934

Strand: Reverse

Name: ihfA [H]

Synonym: Spea_2468

Alternate gene names: 157962289

Gene position: 3010934-3010638 (Counterclockwise)

Preceding gene: 157962290

Following gene: 157962288

Centisome position: 58.19

GC content: 46.8

Gene sequence:

>297_bases
ATGGCACTTACCAAAGCCGAAATGGCAGAACATCTTTTTGAAACGCTAGGTATCAACAAGAGAGTAGCGAAAGAGATGGT
TGAGACGTTTTTCGAAGAAATTCGTCAAGCTCTTGAAAGTGGTGAGCAGGTCAAGCTGTCTGGCTTTGGCAACTTTGACC
TGAGGGATAAGAATCAAAGACCGGGAAGGAACCCAAAGACGGGAGAAGATATCCCAATTTCGGCACGCCGTGTAGTGACG
TTCCGTCCGGGACAGAAGCTTAAAAGCCGTGTCGAAGAGGCTAACGCAAAGAAATAA

Upstream 100 bases:

>100_bases
AACGCTCGTACACTGGAAGAAAAAGAAATCGCTGAGATGGTAGACGTCGTGGTTTCTGCTCTGAAAGACGAGTTCAACGC
ATCGTTGAGGGACTAAAAGT

Downstream 100 bases:

>100_bases
TTGCTTTAGCACTGTAATGAAGAGGCCACTCAATTGAGTGGCTTTTTCTGTTTCCATTTGCTGTAGAGGTTTTATCCTTG
TCTAGAAAGCCGAAGTATTT

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 98; Mature: 97

Protein sequence:

>98_residues
MALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPISARRVVT
FRPGQKLKSRVEEANAKK

Sequences:

>Translated_98_residues
MALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPISARRVVT
FRPGQKLKSRVEEANAKK
>Mature_97_residues
ALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPISARRVVTF
RPGQKLKSRVEEANAKK

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=97, Percent_Identity=84.5360824742268, Blast_Score=170, Evalue=2e-44,
Organism=Escherichia coli, GI1786644, Length=89, Percent_Identity=32.5842696629214, Blast_Score=66, Evalue=5e-13,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=34.4444444444444, Blast_Score=62, Evalue=7e-12,
Organism=Escherichia coli, GI1787141, Length=90, Percent_Identity=33.3333333333333, Blast_Score=61, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 11147; Mature: 11016

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQR
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCC
PGRNPKTGEDIPISARRVVTFRPGQKLKSRVEEANAKK
CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
ALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQR
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCC
PGRNPKTGEDIPISARRVVTFRPGQKLKSRVEEANAKK
CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA