| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157962135
Identifier: 157962135
GI number: 157962135
Start: 2812791
End: 2813660
Strand: Reverse
Name: 157962135
Synonym: Spea_2314
Alternate gene names: NA
Gene position: 2813660-2812791 (Counterclockwise)
Preceding gene: 157962136
Following gene: 157962134
Centisome position: 54.37
GC content: 39.31
Gene sequence:
>870_bases ATGACGCCAAATGAACTTAGGGCTGCAGTCTTAGCTGTAAAACGATGGTCTCGAAGTGATCAGCGTGCACCTAACAAACC ATTAATGATGGCCTATGCACTCTCGAAGTATCTCCAAGGTCATGGTCAATATTTTGATTATGAAACTGAAGTTGACGAAG AGGTCACTGAGTTGCTTAAACGATTTGGTCCAGCTCGGTCAATTTATCATGCTGAGTACCCATTTTGGCGATTAATAAAC GATAATATTTGGACGCTAAATAATGCTGAAAACTGCATTGCTCGAAAGAGTAATACAGACCCCAGCAAACGTGAACTAAT TAAACACCAGGTAAGCGGTGGTTTTAACGCTGCTGCTTATAAATTGATTAAACAAGACTCTAACTTAACCCTAGAGCTTC TAGAAACAATTCTACAAGATAGTTTTCCACAGAGTATTGTTGATGATATTACGCGTCACCTAGGCCTTGAATTCAGCTTT AAGCAGGTTCAAAAGCGAGATCCTAGATTTAGAAAAGAAGTGTTACGCGCCTATAACTACCAGTGTGCGGTTTGTGGCTT TGATTTGCGAATGGACGATATCTCTGTAGGCTTAGAAGCTGCTCATATCAAATGGAAGCAGTTCCATGGGCCGTGCGATG TAAACAATGGTTTAACCCTATGTGCATTACATCATAAAGCTTTTGATAAAGGTGCTTTTACTATTACACAGGATTACACC ATTAAGTTGTCAGAAAGCTTGAATGGCGGTGAGCAAGCCCAGCGACTATTTTTTGATTTTGAAAGTAGACATATTAAACT ACCAAAGAAGGATATTTGGTTGCCTAATATTGAGTACTTGATTTGGCATCAGAAAGAAGTTTTGAAATAG
Upstream 100 bases:
>100_bases TTAAATCTCAAAAAACAAGATATCAATCACTTCTTAAGTTTGATCAATTCTAGTGTCACCAAGCCAATATTAATGCTTTT AGCTGAAATGGAGCATTTAA
Downstream 100 bases:
>100_bases GTCAAGAAATTTGATGGTTAATAGACAGATTTTTTATCCAACGACACATTTGTATCAAAGGAGTAGTTAATATCAAATAT TTCACTGATGTAGTGTGGGG
Product: HNH nuclease
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MTPNELRAAVLAVKRWSRSDQRAPNKPLMMAYALSKYLQGHGQYFDYETEVDEEVTELLKRFGPARSIYHAEYPFWRLIN DNIWTLNNAENCIARKSNTDPSKRELIKHQVSGGFNAAAYKLIKQDSNLTLELLETILQDSFPQSIVDDITRHLGLEFSF KQVQKRDPRFRKEVLRAYNYQCAVCGFDLRMDDISVGLEAAHIKWKQFHGPCDVNNGLTLCALHHKAFDKGAFTITQDYT IKLSESLNGGEQAQRLFFDFESRHIKLPKKDIWLPNIEYLIWHQKEVLK
Sequences:
>Translated_289_residues MTPNELRAAVLAVKRWSRSDQRAPNKPLMMAYALSKYLQGHGQYFDYETEVDEEVTELLKRFGPARSIYHAEYPFWRLIN DNIWTLNNAENCIARKSNTDPSKRELIKHQVSGGFNAAAYKLIKQDSNLTLELLETILQDSFPQSIVDDITRHLGLEFSF KQVQKRDPRFRKEVLRAYNYQCAVCGFDLRMDDISVGLEAAHIKWKQFHGPCDVNNGLTLCALHHKAFDKGAFTITQDYT IKLSESLNGGEQAQRLFFDFESRHIKLPKKDIWLPNIEYLIWHQKEVLK >Mature_288_residues TPNELRAAVLAVKRWSRSDQRAPNKPLMMAYALSKYLQGHGQYFDYETEVDEEVTELLKRFGPARSIYHAEYPFWRLIND NIWTLNNAENCIARKSNTDPSKRELIKHQVSGGFNAAAYKLIKQDSNLTLELLETILQDSFPQSIVDDITRHLGLEFSFK QVQKRDPRFRKEVLRAYNYQCAVCGFDLRMDDISVGLEAAHIKWKQFHGPCDVNNGLTLCALHHKAFDKGAFTITQDYTI KLSESLNGGEQAQRLFFDFESRHIKLPKKDIWLPNIEYLIWHQKEVLK
Specific function: Unknown
COG id: COG3440
COG function: function code V; Predicted restriction endonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33627; Mature: 33495
Theoretical pI: Translated: 8.21; Mature: 8.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPNELRAAVLAVKRWSRSDQRAPNKPLMMAYALSKYLQGHGQYFDYETEVDEEVTELLK CCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH RFGPARSIYHAEYPFWRLINDNIWTLNNAENCIARKSNTDPSKRELIKHQVSGGFNAAAY HCCCHHCEEECCCCEEEEECCCEEEECCCHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHH KLIKQDSNLTLELLETILQDSFPQSIVDDITRHLGLEFSFKQVQKRDPRFRKEVLRAYNY HHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHCC QCAVCGFDLRMDDISVGLEAAHIKWKQFHGPCDVNNGLTLCALHHKAFDKGAFTITQDYT EEEEEECCEEECHHHCCHHHHHEEHHHCCCCCCCCCCEEEEEEEHHHCCCCCEEEECCEE IKLSESLNGGEQAQRLFFDFESRHIKLPKKDIWLPNIEYLIWHQKEVLK EEECCCCCCHHHHHHHHHHHCCCEEECCHHHCCCCCCCEEEECHHHHCC >Mature Secondary Structure TPNELRAAVLAVKRWSRSDQRAPNKPLMMAYALSKYLQGHGQYFDYETEVDEEVTELLK CHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH RFGPARSIYHAEYPFWRLINDNIWTLNNAENCIARKSNTDPSKRELIKHQVSGGFNAAAY HCCCHHCEEECCCCEEEEECCCEEEECCCHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHH KLIKQDSNLTLELLETILQDSFPQSIVDDITRHLGLEFSFKQVQKRDPRFRKEVLRAYNY HHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHCC QCAVCGFDLRMDDISVGLEAAHIKWKQFHGPCDVNNGLTLCALHHKAFDKGAFTITQDYT EEEEEECCEEECHHHCCHHHHHEEHHHCCCCCCCCCCEEEEEEEHHHCCCCCEEEECCEE IKLSESLNGGEQAQRLFFDFESRHIKLPKKDIWLPNIEYLIWHQKEVLK EEECCCCCCHHHHHHHHHHHCCCEEECCHHHCCCCCCCEEEECHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA