Click here to switch to the map view.

The map label for this gene is 157962134

Identifier: 157962134

GI number: 157962134

Start: 2810301

End: 2812421

Strand: Reverse

Name: 157962134

Synonym: Spea_2313

Alternate gene names: NA

Gene position: 2812421-2810301 (Counterclockwise)

Preceding gene: 157962135

Following gene: 157962133

Centisome position: 54.35

GC content: 39.7

Gene sequence:

>2121_bases
GTGAAATTAAGTGAAATAGAGTTAAAAGAAGAATACAGAACCGGCCATGATGATTTAGTTAATAGTTTTTATAAGCCATG
CTTACAAGAAGCTAGTTCATATGATCGTTCTGTTGGTTACTTTAGTTCCACAGTCTTTTTACTGATTGGCCCTGAGCTCG
TTAAGTTTGCTCAACGTGGTGGCAAGATTCGGCTTGTTTGTTCTCAATACTTATCAAATGCTGACATTGAAGCGTTAGAG
TCTGGCTATCATCCTGTCATTGATGAACAGTTTGTCGAAAATAGTCTTTTAAGTTCAGTTAACTTATTAATGCAAAATAC
AAGCACCATTAAAAATACGGTGGCGTTAGCCACACTTATCAAGTGTGGCTGCCTCGAAGTTAAAATCGCATTTCGAAAAA
TAGGTAATGGCTTATTTCATGAAAAAGTAGGCATTATTCACGCCAATAATGAAACAGTTACCTTCAAGGGCTCAATAAAC
GAAACTTGGAATGGTTGGCATGAGCGTGGTAATTACGAAACGATTGATGTATTTCGAAGCTGGGTTGAAGGGAGAGATGC
TCGTCAGGTGTATAGAAACAGTGAGTATTTTGAAACACTTTGGGATAACGATATAGATGCTTTAGATGTGATCCCTTTTC
CTCAAGTTGCTAAGTCAAAACTAGAAAGTATTTCAAAAGAATCGATAGCAGATATAGAGCCCGATACATTGGATGATTAT
TTTATGCCCCCAAACATTGAGCAGATTGATTATGAAGCGCCTAAAAGAACCCCTTTACCCCATCAAGTCAACGCGATAGA
AGCATGGAAACAACAAGGTTGCCGTGGTGTATTTGAGCATGCCACGGGTAGCGGAAAAACCTTCACAGCATTAGTCGCCT
TGAATGAGCATTTAAAGGGCGGCGGTGTCGCTTTAGTGTTGGTACCTGATCGCTTATTACATAAGCAGTGGTCCGAAGAG
ATAAAGTCTGATATTCCTGATGTCATATTACTAAAAGCAGGTGATGGGCATGACCGATGGAGAAAAAATAGACGCTTAAA
TACAATCACTCAACCAGATAAAGATTTAGGCGTAAGGGTGGTCCTTGCCACGATGGCAACGGCGAGGCTTCCTGAGTTTA
TTAATGCAATATGTGCTGGGCCACATTTAATGATTGTGGCTGATGAAGTACATGAAATTGGCAGTCTAGAAAACTCCAAT
ATACTAACCATTGATGCTGGTAAACGATTAGGGCTAAGCGCTACTCCGAATCGTTACGGCGACCCTGTCGGCACAGAAAA
GATATTTAACTATTTCGGCGATATTGTTCAGCCCCCTTTCACGCTAGTAGATGCCATTAATAGTGGTCGCTTAGTTAAGT
ATGAATATTTACCTGAAGCTATTCGCTTTACGGTAGAAGAGTCTGAGCAATGGGAGCTAGAAACTAAAGCTATTTATAAA
GAATATGCGCGCTCTAAACGTGATGCTAATGGAGCACCAATTACCTCTGTAAAACTGCAACTAATGTTAATTCAGCGTTC
GCGTATTGCTAAAAAAGCGTCTGCTAAAATCCCCTATGCAGCAAGAGTGATTAAAGAGAACTATAAAGAAGGTGAGAGCT
GGTTAGTATATTGTGAAGACCAATATCAAGTCAGAGAAGTTATTAGTGCTTTAAAAGAAAGTGGTCATTCGCCTTGTGAA
TATCATACCAATATGAAAGGAGATTCCGCTGCGTCACTTGAGTGGTTTAAGCAATTTGGAGGCATTATGGTTTCTATTCG
CTGTTTAGACCAAGGAGTGGACATTCCTAAAATTTCACATGTTATTATTCTTGCTTCATCGCAGAATCCAAGGCAATTTA
TACAACGACGAGGTCGCGTGTTACGCATAAGCGCCAATAAACATAAAGCGGTTATATATGATGCTGTGATGGTGCCTATC
TGTTTAGATAGTGAGCCTGGTCAATTATCATTATTGAAGAGTGAATTACAAAGAAGTATTCAGTTTTCAGGCACCGCAAT
GAACAAATCAGGTTCGACTAAATTAATCACAATCGCAATTGAGTTAGGTATAGACCCTCAAGAGTGTGGCTTCTATGGCA
CTGATGGAATTGAAGAGTTAGGAGATGTTGAAGATGAGTAA

Upstream 100 bases:

>100_bases
AAAAATATTTAGTAAATATCCAAATTAGTATTTAACAAGTTGTATATTGATGTTGGAGAAGTTGATTTTCTGTTGCTGTA
TTGGATTGAAGGGAAATTAA

Downstream 100 bases:

>100_bases
AAGTAATCCATTATCTGTATTGTTAAAAATTAATGCTCAACTCGAGGTACCAATAGATTCACTGTTAATTGAACAGTGCT
ATGCCATTCAGCAAAAGCAT

Product: type III restriction protein res subunit

Products: NA

Alternate protein names: Type III Restriction Res Subunit; DNA Repair Helicase; Helicase Domain Protein; Helicase Domain-Containing Protein; Helicase-Like; DEAD/H Helicase; SNF2 Family DNA/RNA Helicase; Type III Restriction Res Subunit Family; Helicase; DNA-Repair Protein; DNA Repair Helicase RAD; Superfamily II DNA/RNA Helicase; DNA-Repair Helicase; Helicase DNA Repair Rad; DNA Repair Protein RAD; Type III Restriction- System Subunit Res; Restriction; DEAD/DEAH Box Helicase Domain-Containing Protein; RNA Polymerase Sigma

Number of amino acids: Translated: 706; Mature: 706

Protein sequence:

>706_residues
MKLSEIELKEEYRTGHDDLVNSFYKPCLQEASSYDRSVGYFSSTVFLLIGPELVKFAQRGGKIRLVCSQYLSNADIEALE
SGYHPVIDEQFVENSLLSSVNLLMQNTSTIKNTVALATLIKCGCLEVKIAFRKIGNGLFHEKVGIIHANNETVTFKGSIN
ETWNGWHERGNYETIDVFRSWVEGRDARQVYRNSEYFETLWDNDIDALDVIPFPQVAKSKLESISKESIADIEPDTLDDY
FMPPNIEQIDYEAPKRTPLPHQVNAIEAWKQQGCRGVFEHATGSGKTFTALVALNEHLKGGGVALVLVPDRLLHKQWSEE
IKSDIPDVILLKAGDGHDRWRKNRRLNTITQPDKDLGVRVVLATMATARLPEFINAICAGPHLMIVADEVHEIGSLENSN
ILTIDAGKRLGLSATPNRYGDPVGTEKIFNYFGDIVQPPFTLVDAINSGRLVKYEYLPEAIRFTVEESEQWELETKAIYK
EYARSKRDANGAPITSVKLQLMLIQRSRIAKKASAKIPYAARVIKENYKEGESWLVYCEDQYQVREVISALKESGHSPCE
YHTNMKGDSAASLEWFKQFGGIMVSIRCLDQGVDIPKISHVIILASSQNPRQFIQRRGRVLRISANKHKAVIYDAVMVPI
CLDSEPGQLSLLKSELQRSIQFSGTAMNKSGSTKLITIAIELGIDPQECGFYGTDGIEELGDVEDE

Sequences:

>Translated_706_residues
MKLSEIELKEEYRTGHDDLVNSFYKPCLQEASSYDRSVGYFSSTVFLLIGPELVKFAQRGGKIRLVCSQYLSNADIEALE
SGYHPVIDEQFVENSLLSSVNLLMQNTSTIKNTVALATLIKCGCLEVKIAFRKIGNGLFHEKVGIIHANNETVTFKGSIN
ETWNGWHERGNYETIDVFRSWVEGRDARQVYRNSEYFETLWDNDIDALDVIPFPQVAKSKLESISKESIADIEPDTLDDY
FMPPNIEQIDYEAPKRTPLPHQVNAIEAWKQQGCRGVFEHATGSGKTFTALVALNEHLKGGGVALVLVPDRLLHKQWSEE
IKSDIPDVILLKAGDGHDRWRKNRRLNTITQPDKDLGVRVVLATMATARLPEFINAICAGPHLMIVADEVHEIGSLENSN
ILTIDAGKRLGLSATPNRYGDPVGTEKIFNYFGDIVQPPFTLVDAINSGRLVKYEYLPEAIRFTVEESEQWELETKAIYK
EYARSKRDANGAPITSVKLQLMLIQRSRIAKKASAKIPYAARVIKENYKEGESWLVYCEDQYQVREVISALKESGHSPCE
YHTNMKGDSAASLEWFKQFGGIMVSIRCLDQGVDIPKISHVIILASSQNPRQFIQRRGRVLRISANKHKAVIYDAVMVPI
CLDSEPGQLSLLKSELQRSIQFSGTAMNKSGSTKLITIAIELGIDPQECGFYGTDGIEELGDVEDE
>Mature_706_residues
MKLSEIELKEEYRTGHDDLVNSFYKPCLQEASSYDRSVGYFSSTVFLLIGPELVKFAQRGGKIRLVCSQYLSNADIEALE
SGYHPVIDEQFVENSLLSSVNLLMQNTSTIKNTVALATLIKCGCLEVKIAFRKIGNGLFHEKVGIIHANNETVTFKGSIN
ETWNGWHERGNYETIDVFRSWVEGRDARQVYRNSEYFETLWDNDIDALDVIPFPQVAKSKLESISKESIADIEPDTLDDY
FMPPNIEQIDYEAPKRTPLPHQVNAIEAWKQQGCRGVFEHATGSGKTFTALVALNEHLKGGGVALVLVPDRLLHKQWSEE
IKSDIPDVILLKAGDGHDRWRKNRRLNTITQPDKDLGVRVVLATMATARLPEFINAICAGPHLMIVADEVHEIGSLENSN
ILTIDAGKRLGLSATPNRYGDPVGTEKIFNYFGDIVQPPFTLVDAINSGRLVKYEYLPEAIRFTVEESEQWELETKAIYK
EYARSKRDANGAPITSVKLQLMLIQRSRIAKKASAKIPYAARVIKENYKEGESWLVYCEDQYQVREVISALKESGHSPCE
YHTNMKGDSAASLEWFKQFGGIMVSIRCLDQGVDIPKISHVIILASSQNPRQFIQRRGRVLRISANKHKAVIYDAVMVPI
CLDSEPGQLSLLKSELQRSIQFSGTAMNKSGSTKLITIAIELGIDPQECGFYGTDGIEELGDVEDE

Specific function: Unknown

COG id: COG1061

COG function: function code KL; DNA or RNA helicases of superfamily II

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 79216; Mature: 79216

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSEIELKEEYRTGHDDLVNSFYKPCLQEASSYDRSVGYFSSTVFLLIGPELVKFAQRG
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCEEEEEECHHHHHHHHCC
GKIRLVCSQYLSNADIEALESGYHPVIDEQFVENSLLSSVNLLMQNTSTIKNTVALATLI
CCEEEEHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
KCGCLEVKIAFRKIGNGLFHEKVGIIHANNETVTFKGSINETWNGWHERGNYETIDVFRS
HCCHHHHHHHHHHHCCCHHHHCEEEEEECCEEEEEECCCCCCCCHHHHCCCCCHHHHHHH
WVEGRDARQVYRNSEYFETLWDNDIDALDVIPFPQVAKSKLESISKESIADIEPDTLDDY
HHCCCHHHHHHCCCHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
FMPPNIEQIDYEAPKRTPLPHQVNAIEAWKQQGCRGVFEHATGSGKTFTALVALNEHLKG
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCEEEEEEEEHHHCCC
GGVALVLVPDRLLHKQWSEEIKSDIPDVILLKAGDGHDRWRKNRRLNTITQPDKDLGVRV
CCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCCCHHCCHHH
VLATMATARLPEFINAICAGPHLMIVADEVHEIGSLENSNILTIDAGKRLGLSATPNRYG
HHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCC
DPVGTEKIFNYFGDIVQPPFTLVDAINSGRLVKYEYLPEAIRFTVEESEQWELETKAIYK
CCCCHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEECCCHHHEEEECCCCCHHHHHHHHHH
EYARSKRDANGAPITSVKLQLMLIQRSRIAKKASAKIPYAARVIKENYKEGESWLVYCED
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECC
QYQVREVISALKESGHSPCEYHTNMKGDSAASLEWFKQFGGIMVSIRCLDQGVDIPKISH
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEHHCCCCCCCCCE
VIILASSQNPRQFIQRRGRVLRISANKHKAVIYDAVMVPICLDSEPGQLSLLKSELQRSI
EEEEECCCCHHHHHHHCCCEEEEECCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHH
QFSGTAMNKSGSTKLITIAIELGIDPQECGFYGTDGIEELGDVEDE
HCCCEEECCCCCCEEEEEEEEECCCHHHCCCCCCCCHHHHCCCCCC
>Mature Secondary Structure
MKLSEIELKEEYRTGHDDLVNSFYKPCLQEASSYDRSVGYFSSTVFLLIGPELVKFAQRG
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCEEEEEECHHHHHHHHCC
GKIRLVCSQYLSNADIEALESGYHPVIDEQFVENSLLSSVNLLMQNTSTIKNTVALATLI
CCEEEEHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
KCGCLEVKIAFRKIGNGLFHEKVGIIHANNETVTFKGSINETWNGWHERGNYETIDVFRS
HCCHHHHHHHHHHHCCCHHHHCEEEEEECCEEEEEECCCCCCCCHHHHCCCCCHHHHHHH
WVEGRDARQVYRNSEYFETLWDNDIDALDVIPFPQVAKSKLESISKESIADIEPDTLDDY
HHCCCHHHHHHCCCHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
FMPPNIEQIDYEAPKRTPLPHQVNAIEAWKQQGCRGVFEHATGSGKTFTALVALNEHLKG
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCEEEEEEEEHHHCCC
GGVALVLVPDRLLHKQWSEEIKSDIPDVILLKAGDGHDRWRKNRRLNTITQPDKDLGVRV
CCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCCCHHCCHHH
VLATMATARLPEFINAICAGPHLMIVADEVHEIGSLENSNILTIDAGKRLGLSATPNRYG
HHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCC
DPVGTEKIFNYFGDIVQPPFTLVDAINSGRLVKYEYLPEAIRFTVEESEQWELETKAIYK
CCCCHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEECCCHHHEEEECCCCCHHHHHHHHHH
EYARSKRDANGAPITSVKLQLMLIQRSRIAKKASAKIPYAARVIKENYKEGESWLVYCED
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECC
QYQVREVISALKESGHSPCEYHTNMKGDSAASLEWFKQFGGIMVSIRCLDQGVDIPKISH
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEHHCCCCCCCCCE
VIILASSQNPRQFIQRRGRVLRISANKHKAVIYDAVMVPICLDSEPGQLSLLKSELQRSI
EEEEECCCCHHHHHHHCCCEEEEECCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHH
QFSGTAMNKSGSTKLITIAIELGIDPQECGFYGTDGIEELGDVEDE
HCCCEEECCCCCCEEEEEEEEECCCHHHCCCCCCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA