| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is ycbL [C]
Identifier: 157961944
GI number: 157961944
Start: 2568927
End: 2570036
Strand: Direct
Name: ycbL [C]
Synonym: Spea_2123
Alternate gene names: 157961944
Gene position: 2568927-2570036 (Clockwise)
Preceding gene: 157961941
Following gene: 157961945
Centisome position: 49.65
GC content: 41.08
Gene sequence:
>1110_bases ATGGACGAATCGAACAAGCAATTGCCTAATGATTATCAAACGCAAAAATTAAAAGATCGCCAAGCGTTAAATTACCCATT CGAACCACCATTGTGTGATGCAAATGTTGTCTATGTGGCAAAAGGCGTGCTTTGGGCGCGACTCTCTATGCCGATGGGCC TAGATCATATCAATGTTTATATTTTGGAAGATTTCGATGGCTGGTATCTAATTGATACCGGTTTAAATACTGAAGGTAAT AAAGCTCTGTGGCTTTCGCTTGCAGCAAATTACCTGAGCGCAAAACCGGTTAAAGGCGTTATCTGTACCCATTTTCATTA TGACCACTCTGGCCTAACTAGCTGGTTAACCGAATATTTTAATGTGCCTTTGTATATGACTCACGGTGAGTACTATATGT TGAGAGGGGTAGCTGCAACTCATAATGCTACCGGGAGTAAACAGGATAAGCTGTTTTATACTCACGCAGGCTTGTCTGCT GAGTATGCCGCAAAGATTTTTGAAGCTTGTAAGAAAGATCCTTATATCACGCATTACCCGCCACGTTTTTCCCGCCTAAG AGAGGGGGATACTTTCAGAATAGGACATCGAGAGTGGCAGATTTGGATTGGGGAAGGTCATAGCCCAGAGCATGCTTGTT TATATAGTGAAGCCATAGACGAAGAACCTGCACTTTTAATTGCAGGTGACCAAGTTCTTCCCGAAATTAGTTCAAATATT TTGGTTAGTAGCATTGAACCTGAAGCGAACCCGTTAGCTAACTGGTTTAGATCGTTAAAGCGACTCAAAGCATTAGATAG TGAAACTATGGTACTGCCAGCACATGGTCCCGTTTTTGTAAACTTGCATACTAGAGCTGAACAACTGGAACAGCATCACA TAAACCAACTGGATACACTGCGTCAGTTAAGCATGAGTCAGGCAAGCTTTAGTGCCTTGGAAGCTGTAGAGGCGTTATTT AAACGCCCTTTACAACCAATAGAGAAGCTGATGGCTCTTGGCGAAACACTGGCCCATTTAAATTGGTTAATAAACGTAGA AGAGTTAACAAAGACCCTTTGTAATAAAAGTAATAAATATTTATATAACAATAAGCTAAGAATAGCTTAG
Upstream 100 bases:
>100_bases GTTGCTATCTCGTGGAATAGATTCTTATATTTGTGTTCTTAGTACTCAGGTTTTATGGTCAGAAGAAAAATACAACTTTG AACTAAAGCGGGAGGGATGA
Downstream 100 bases:
>100_bases GGATTATAGTTAACAAGAAATAGATAACAGGAGAAAGTGATGGATATCATTGATCAAGCACAAAAAGTTAAAGCGCAACT GACAGCAGCAGGGGCGCCAT
Product: beta-lactamase domain-containing protein
Products: NA
Alternate protein names: Metallo-Beta-Lactamase Family Protein; Beta-Lactamase Domain Protein; Beta-Lactamase-Like; Beta-Lactamase-Like Protein; Metallo-Beta-Lactamase Superfamily Protein; Zn-Dependent Hydrolase; Metallo-Beta-Lactamase Superfamily; Metallo-Beta-Lactamase Domain Protein; Metallo-Beta-Lactamase; Beta Lactamase; Beta-Lactamase Class B; Zinc Metallohydrolase Glyoxalase II Family; Zn-Dependent Hydrolase Glyoxylase; Metallo-Dependent Enzymatic Protein; Metallo-Beta-Lactamase Family Hydrolase; Hydrolase; AMP-Dependent Synthetase And Ligase; Zinc Metallohydrolase; Metallo-Hydrolase/Oxidoreductase Superfamily Protein; Zn-Dependent Hydrolase Including Glyoxylase-Like Protein
Number of amino acids: Translated: 369; Mature: 369
Protein sequence:
>369_residues MDESNKQLPNDYQTQKLKDRQALNYPFEPPLCDANVVYVAKGVLWARLSMPMGLDHINVYILEDFDGWYLIDTGLNTEGN KALWLSLAANYLSAKPVKGVICTHFHYDHSGLTSWLTEYFNVPLYMTHGEYYMLRGVAATHNATGSKQDKLFYTHAGLSA EYAAKIFEACKKDPYITHYPPRFSRLREGDTFRIGHREWQIWIGEGHSPEHACLYSEAIDEEPALLIAGDQVLPEISSNI LVSSIEPEANPLANWFRSLKRLKALDSETMVLPAHGPVFVNLHTRAEQLEQHHINQLDTLRQLSMSQASFSALEAVEALF KRPLQPIEKLMALGETLAHLNWLINVEELTKTLCNKSNKYLYNNKLRIA
Sequences:
>Translated_369_residues MDESNKQLPNDYQTQKLKDRQALNYPFEPPLCDANVVYVAKGVLWARLSMPMGLDHINVYILEDFDGWYLIDTGLNTEGN KALWLSLAANYLSAKPVKGVICTHFHYDHSGLTSWLTEYFNVPLYMTHGEYYMLRGVAATHNATGSKQDKLFYTHAGLSA EYAAKIFEACKKDPYITHYPPRFSRLREGDTFRIGHREWQIWIGEGHSPEHACLYSEAIDEEPALLIAGDQVLPEISSNI LVSSIEPEANPLANWFRSLKRLKALDSETMVLPAHGPVFVNLHTRAEQLEQHHINQLDTLRQLSMSQASFSALEAVEALF KRPLQPIEKLMALGETLAHLNWLINVEELTKTLCNKSNKYLYNNKLRIA >Mature_369_residues MDESNKQLPNDYQTQKLKDRQALNYPFEPPLCDANVVYVAKGVLWARLSMPMGLDHINVYILEDFDGWYLIDTGLNTEGN KALWLSLAANYLSAKPVKGVICTHFHYDHSGLTSWLTEYFNVPLYMTHGEYYMLRGVAATHNATGSKQDKLFYTHAGLSA EYAAKIFEACKKDPYITHYPPRFSRLREGDTFRIGHREWQIWIGEGHSPEHACLYSEAIDEEPALLIAGDQVLPEISSNI LVSSIEPEANPLANWFRSLKRLKALDSETMVLPAHGPVFVNLHTRAEQLEQHHINQLDTLRQLSMSQASFSALEAVEALF KRPLQPIEKLMALGETLAHLNWLINVEELTKTLCNKSNKYLYNNKLRIA
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42047; Mature: 42047
Theoretical pI: Translated: 6.41; Mature: 6.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDESNKQLPNDYQTQKLKDRQALNYPFEPPLCDANVVYVAKGVLWARLSMPMGLDHINVY CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEE ILEDFDGWYLIDTGLNTEGNKALWLSLAANYLSAKPVKGVICTHFHYDHSGLTSWLTEYF EEEECCCEEEEECCCCCCCCCEEEEEEHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHH NVPLYMTHGEYYMLRGVAATHNATGSKQDKLFYTHAGLSAEYAAKIFEACKKDPYITHYP CCCEEEECCCEEEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCC PRFSRLREGDTFRIGHREWQIWIGEGHSPEHACLYSEAIDEEPALLIAGDQVLPEISSNI CHHHHHCCCCEEEECCEEEEEEEECCCCCCHHHHHHHHCCCCCEEEEECCHHHHHHCCCE LVSSIEPEANPLANWFRSLKRLKALDSETMVLPAHGPVFVNLHTRAEQLEQHHINQLDTL EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECHHHHHHHHHHHHHHHHH RQLSMSQASFSALEAVEALFKRPLQPIEKLMALGETLAHLNWLINVEELTKTLCNKSNKY HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHCCCCCE LYNNKLRIA EECCEEEEC >Mature Secondary Structure MDESNKQLPNDYQTQKLKDRQALNYPFEPPLCDANVVYVAKGVLWARLSMPMGLDHINVY CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEE ILEDFDGWYLIDTGLNTEGNKALWLSLAANYLSAKPVKGVICTHFHYDHSGLTSWLTEYF EEEECCCEEEEECCCCCCCCCEEEEEEHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHH NVPLYMTHGEYYMLRGVAATHNATGSKQDKLFYTHAGLSAEYAAKIFEACKKDPYITHYP CCCEEEECCCEEEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCC PRFSRLREGDTFRIGHREWQIWIGEGHSPEHACLYSEAIDEEPALLIAGDQVLPEISSNI CHHHHHCCCCEEEECCEEEEEEEECCCCCCHHHHHHHHCCCCCEEEEECCHHHHHHCCCE LVSSIEPEANPLANWFRSLKRLKALDSETMVLPAHGPVFVNLHTRAEQLEQHHINQLDTL EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECHHHHHHHHHHHHHHHHH RQLSMSQASFSALEAVEALFKRPLQPIEKLMALGETLAHLNWLINVEELTKTLCNKSNKY HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHCCCCCE LYNNKLRIA EECCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA