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The map label for this gene is ycbB [H]

Identifier: 157961829

GI number: 157961829

Start: 2433784

End: 2435088

Strand: Direct

Name: ycbB [H]

Synonym: Spea_2008

Alternate gene names: 157961829

Gene position: 2433784-2435088 (Clockwise)

Preceding gene: 157961827

Following gene: 157961830

Centisome position: 47.03

GC content: 38.39

Gene sequence:

>1305_bases
GTGAAAAGAGTAAAAGCTTTTTGGTGCCAACTCCTTGTTCGCTTGCTGATAGTATCTTTTTCCGCTGTAGTACATGCGGA
TATCGCTCCTAGAGTGTCCTTAGATAACCAAAGTGTCGCCATGCAGCTGAGTTCGCTCGCATTCGATCTAGGTGTAATAG
ACAGTGCTGCTGAGTCAACTAATACTGTAGGTTTAGTTAAGCTATTGAATAAAGAGCTTTTTCAGGTTGAATTTACAAGT
CTCTCATTATCAACTGAACAGTATCTAAAATTAATTAAGCGAAAGGATATAGCAAGTTATAGAAGGCTAATTAAGCAATA
TAAAGCGTTAGATCGCTTTCAGTGGCCGATGATAAATCCTATAGAACTTAGGTTAGGCTTAAGAGTCAAAGAAGTTGCTA
AACTCAGGTGGGTCTTAGTCAAACTTGGGGATATGGAGCCTCATACTATAGCTGCTTACCGAGAGAGTATTTATGATCCT
AGTGTTGAGGCGGGTCTGAAACGCTTTCAAATAAGGCATGGTTTATCAGTTGATGGCAAACTGGGAAATCAAACACTGTT
ATCCATTAATACCAAGCCTAGCTTCAGAGTCGTTCAACTACAGAAGGCTTTAAAATTAAGCCTAAAAAAGTTTGATGAAG
AGCAAGAATACGTCTTTGTCAATCTTACCGATTATACGTTACGGATCAGTAAAAATGGTGTCGAGCAGCTAAAAATGCCT
GTCATAGTGGGAAAACCTAGCAGTAAAACGCCAGAATTAAACACGGTAGTGAGTGTTGTTACTATTAACCCGACCTGGAC
TCCACCCGCAAGCATTATTTATCAGGATATAATGAAAAGCGTTGATGAACACCCTAACTATTTGAGGAATAATAATTTTG
TACTTAAGAGTTACAAAACAGGGATTGAAGATTCTAATCTCGCAGGTATGGATACTGCTATTTTGAAGCACAAGCTAAAA
ACGAGTACTTTAGTTCAGCGCTCCGGCGATAAAAACGCCTTAGGAAAATTTCGATTTACAATCCCAAATACTAGTGCCAT
TTTTCTCCATGACACACCAAATAAGTATTTGTTTAAAAGAGCTAATCGAGCCCTTAGCCACGGCTGTATTAGGCTTTCTG
AACCAGAACGATTTGCTCATTACTTAATTAGCAAAGAGCCCTTACAAACGCAGCATTTATTTCAAAAAGCGCTTAAAACC
AACAAAACAATGCATTTCAGACTGAGAAGCAGGCTGCCAATTAACATCATTTATCAAAATGTTTGGATTGATAAAGATGG
CCGTTTGCAAATAAGAGAAAGTTAG

Upstream 100 bases:

>100_bases
TCGATTTGATTTGATTAGTTTGGTTTTAGCTAGTCTCAATCTTTATTCTAAATCTGTTTTATTATTGATGTTCGCATAGT
GCTAGATAGGGGGCGATTCG

Downstream 100 bases:

>100_bases
GAGATCAAAATGGACAGTTTTTGCCATGATAATACCATGTTAGCCAAGCTTATTAGAAAAGAGAAGAATGCAAGGATGAA
GGTTAAGTTATTGGCGGTTT

Product: peptidoglycan-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MKRVKAFWCQLLVRLLIVSFSAVVHADIAPRVSLDNQSVAMQLSSLAFDLGVIDSAAESTNTVGLVKLLNKELFQVEFTS
LSLSTEQYLKLIKRKDIASYRRLIKQYKALDRFQWPMINPIELRLGLRVKEVAKLRWVLVKLGDMEPHTIAAYRESIYDP
SVEAGLKRFQIRHGLSVDGKLGNQTLLSINTKPSFRVVQLQKALKLSLKKFDEEQEYVFVNLTDYTLRISKNGVEQLKMP
VIVGKPSSKTPELNTVVSVVTINPTWTPPASIIYQDIMKSVDEHPNYLRNNNFVLKSYKTGIEDSNLAGMDTAILKHKLK
TSTLVQRSGDKNALGKFRFTIPNTSAIFLHDTPNKYLFKRANRALSHGCIRLSEPERFAHYLISKEPLQTQHLFQKALKT
NKTMHFRLRSRLPINIIYQNVWIDKDGRLQIRES

Sequences:

>Translated_434_residues
MKRVKAFWCQLLVRLLIVSFSAVVHADIAPRVSLDNQSVAMQLSSLAFDLGVIDSAAESTNTVGLVKLLNKELFQVEFTS
LSLSTEQYLKLIKRKDIASYRRLIKQYKALDRFQWPMINPIELRLGLRVKEVAKLRWVLVKLGDMEPHTIAAYRESIYDP
SVEAGLKRFQIRHGLSVDGKLGNQTLLSINTKPSFRVVQLQKALKLSLKKFDEEQEYVFVNLTDYTLRISKNGVEQLKMP
VIVGKPSSKTPELNTVVSVVTINPTWTPPASIIYQDIMKSVDEHPNYLRNNNFVLKSYKTGIEDSNLAGMDTAILKHKLK
TSTLVQRSGDKNALGKFRFTIPNTSAIFLHDTPNKYLFKRANRALSHGCIRLSEPERFAHYLISKEPLQTQHLFQKALKT
NKTMHFRLRSRLPINIIYQNVWIDKDGRLQIRES
>Mature_434_residues
MKRVKAFWCQLLVRLLIVSFSAVVHADIAPRVSLDNQSVAMQLSSLAFDLGVIDSAAESTNTVGLVKLLNKELFQVEFTS
LSLSTEQYLKLIKRKDIASYRRLIKQYKALDRFQWPMINPIELRLGLRVKEVAKLRWVLVKLGDMEPHTIAAYRESIYDP
SVEAGLKRFQIRHGLSVDGKLGNQTLLSINTKPSFRVVQLQKALKLSLKKFDEEQEYVFVNLTDYTLRISKNGVEQLKMP
VIVGKPSSKTPELNTVVSVVTINPTWTPPASIIYQDIMKSVDEHPNYLRNNNFVLKSYKTGIEDSNLAGMDTAILKHKLK
TSTLVQRSGDKNALGKFRFTIPNTSAIFLHDTPNKYLFKRANRALSHGCIRLSEPERFAHYLISKEPLQTQHLFQKALKT
NKTMHFRLRSRLPINIIYQNVWIDKDGRLQIRES

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=281, Percent_Identity=30.9608540925267, Blast_Score=156, Evalue=3e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 49709; Mature: 49709

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRVKAFWCQLLVRLLIVSFSAVVHADIAPRVSLDNQSVAMQLSSLAFDLGVIDSAAEST
CCHHHHHHHHHHHHHHHHHHHHHHEECCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCC
NTVGLVKLLNKELFQVEFTSLSLSTEQYLKLIKRKDIASYRRLIKQYKALDRFQWPMINP
CHHHHHHHHHHHHHEEEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCH
IELRLGLRVKEVAKLRWVLVKLGDMEPHTIAAYRESIYDPSVEAGLKRFQIRHGLSVDGK
HHEEECCCHHHHHHHHEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC
LGNQTLLSINTKPSFRVVQLQKALKLSLKKFDEEQEYVFVNLTDYTLRISKNGVEQLKMP
CCCEEEEEECCCCCEEHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCHHHHCCC
VIVGKPSSKTPELNTVVSVVTINPTWTPPASIIYQDIMKSVDEHPNYLRNNNFVLKSYKT
EEEECCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHCCCCEEEEEECC
GIEDSNLAGMDTAILKHKLKTSTLVQRSGDKNALGKFRFTIPNTSAIFLHDTPNKYLFKR
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEECCCCHHHHHH
ANRALSHGCIRLSEPERFAHYLISKEPLQTQHLFQKALKTNKTMHFRLRSRLPINIIYQN
HHHHHHHCEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEE
VWIDKDGRLQIRES
EEECCCCCEEEECC
>Mature Secondary Structure
MKRVKAFWCQLLVRLLIVSFSAVVHADIAPRVSLDNQSVAMQLSSLAFDLGVIDSAAEST
CCHHHHHHHHHHHHHHHHHHHHHHEECCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCC
NTVGLVKLLNKELFQVEFTSLSLSTEQYLKLIKRKDIASYRRLIKQYKALDRFQWPMINP
CHHHHHHHHHHHHHEEEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCH
IELRLGLRVKEVAKLRWVLVKLGDMEPHTIAAYRESIYDPSVEAGLKRFQIRHGLSVDGK
HHEEECCCHHHHHHHHEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC
LGNQTLLSINTKPSFRVVQLQKALKLSLKKFDEEQEYVFVNLTDYTLRISKNGVEQLKMP
CCCEEEEEECCCCCEEHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCHHHHCCC
VIVGKPSSKTPELNTVVSVVTINPTWTPPASIIYQDIMKSVDEHPNYLRNNNFVLKSYKT
EEEECCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHCCCCEEEEEECC
GIEDSNLAGMDTAILKHKLKTSTLVQRSGDKNALGKFRFTIPNTSAIFLHDTPNKYLFKR
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEECCCCHHHHHH
ANRALSHGCIRLSEPERFAHYLISKEPLQTQHLFQKALKTNKTMHFRLRSRLPINIIYQN
HHHHHHHCEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEE
VWIDKDGRLQIRES
EEECCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]