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The map label for this gene is ydhC [H]

Identifier: 157961526

GI number: 157961526

Start: 2067203

End: 2067874

Strand: Reverse

Name: ydhC [H]

Synonym: Spea_1701

Alternate gene names: 157961526

Gene position: 2067874-2067203 (Counterclockwise)

Preceding gene: 157961527

Following gene: 157961525

Centisome position: 39.96

GC content: 43.45

Gene sequence:

>672_bases
ATGAGCAGAACAACACCTATCGTCCATAAAACTCGCACACAAATTGTGGTTGTGGTGCTTAGGGAAAAAATCCTTTCCGG
TGAAATTGCGGCGGGAAAACCGTTACGTCAAAGCGCCTTAGCTGATGAACTAAATGTTAGCCGAATTCCGGTAAGAGAAG
CCTTATTGCAACTGGAAGCCGAAGGCTTAGTGAAATTTGAAGCCCATAAAGGCGCAACAGCAACACTCTTGTCTGTTGAG
CATGTTACCGAACTTTTTGAATTACGAGCACTGATCGAAGGCGACTTGCTCGCGAAGTCGATACCTAACTTAAGTGAAGA
AGATCTCAATCAAGCCGAGAGTATTCTGCAAGAAATGGATGCAGCTTTCCAAGATAAAGATCAAGTTGAAAACTGGAGTG
GGTTAAACTCACAATTCCATACTTGCCTTTACAGTGCGGCGAATCGTCCCCACACGCTTGAAGTTGTTCAAGGATTAAAT
ACGAGTTGTGACCGTTACGTTCGATTACAACTATTTCTTGCAAGCGGTGTACCTAAGGCTCAACAAGATCACCGTGAAAT
ACTTGAATATTGTAAGAAGAAAGATGTTGAAAAAGCTGTCGAGATATTACGCGCACATATCATACACGCTGCCGAAGCGA
TCCGCGTATTAGTTAGCCAACAAGACGACTAA

Upstream 100 bases:

>100_bases
AAATGTGAAAGGGAAACCTATGGTTTCCCTTTCATTATAATGGCATTAGCGGTAACCTAGGACGGATCAACTTGTATAAA
TAACAAAAAAATCGGGAACT

Downstream 100 bases:

>100_bases
CTCACAGTTTGATTAGCATGATTTTTGCTAAACTTCACTTATACAGATCCCATAAGGCAGAGCTCAGGTTCTGCCTTTTT
AATTGATAGAGAATACCTAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MSRTTPIVHKTRTQIVVVVLREKILSGEIAAGKPLRQSALADELNVSRIPVREALLQLEAEGLVKFEAHKGATATLLSVE
HVTELFELRALIEGDLLAKSIPNLSEEDLNQAESILQEMDAAFQDKDQVENWSGLNSQFHTCLYSAANRPHTLEVVQGLN
TSCDRYVRLQLFLASGVPKAQQDHREILEYCKKKDVEKAVEILRAHIIHAAEAIRVLVSQQDD

Sequences:

>Translated_223_residues
MSRTTPIVHKTRTQIVVVVLREKILSGEIAAGKPLRQSALADELNVSRIPVREALLQLEAEGLVKFEAHKGATATLLSVE
HVTELFELRALIEGDLLAKSIPNLSEEDLNQAESILQEMDAAFQDKDQVENWSGLNSQFHTCLYSAANRPHTLEVVQGLN
TSCDRYVRLQLFLASGVPKAQQDHREILEYCKKKDVEKAVEILRAHIIHAAEAIRVLVSQQDD
>Mature_222_residues
SRTTPIVHKTRTQIVVVVLREKILSGEIAAGKPLRQSALADELNVSRIPVREALLQLEAEGLVKFEAHKGATATLLSVEH
VTELFELRALIEGDLLAKSIPNLSEEDLNQAESILQEMDAAFQDKDQVENWSGLNSQFHTCLYSAANRPHTLEVVQGLNT
SCDRYVRLQLFLASGVPKAQQDHREILEYCKKKDVEKAVEILRAHIIHAAEAIRVLVSQQDD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=212, Percent_Identity=25.4716981132075, Blast_Score=71, Evalue=5e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24907; Mature: 24776

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRTTPIVHKTRTQIVVVVLREKILSGEIAAGKPLRQSALADELNVSRIPVREALLQLEA
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
EGLVKFEAHKGATATLLSVEHVTELFELRALIEGDLLAKSIPNLSEEDLNQAESILQEMD
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
AAFQDKDQVENWSGLNSQFHTCLYSAANRPHTLEVVQGLNTSCDRYVRLQLFLASGVPKA
HHHCCHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCH
QQDHREILEYCKKKDVEKAVEILRAHIIHAAEAIRVLVSQQDD
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SRTTPIVHKTRTQIVVVVLREKILSGEIAAGKPLRQSALADELNVSRIPVREALLQLEA
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
EGLVKFEAHKGATATLLSVEHVTELFELRALIEGDLLAKSIPNLSEEDLNQAESILQEMD
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
AAFQDKDQVENWSGLNSQFHTCLYSAANRPHTLEVVQGLNTSCDRYVRLQLFLASGVPKA
HHHCCHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCH
QQDHREILEYCKKKDVEKAVEILRAHIIHAAEAIRVLVSQQDD
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]