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The map label for this gene is irpA [H]

Identifier: 157960499

GI number: 157960499

Start: 831293

End: 832444

Strand: Direct

Name: irpA [H]

Synonym: Spea_0671

Alternate gene names: 157960499

Gene position: 831293-832444 (Clockwise)

Preceding gene: 157960498

Following gene: 157960500

Centisome position: 16.06

GC content: 48.96

Gene sequence:

>1152_bases
ATGAAACATTTTACTCAATCAGTGGTAGCCATCGCGCTTATTTCTGCACTTGCTGGCTGTGGCGGTTCTGGCTCGGATGA
CAGCACACCAGAAGTTATACCTGAAACGGGCTTTACGTTTTCAGCAACAGACATGGTGGCTAATCTCACTGATGATGTGA
TTGTGGCGGGCTACTCGAACTTAGCCGTTCGTGGTGAGGCTATGCTGCAAGCTACGCAGACTCTGGTTGCTACACCGACT
CAGGCGAATTTAGAAGCGGCGCAAGCGGCATGGAAGGCGGCGCGTCAGCCATGGGAGCAAGGAGAGTCGCATATCTTTGG
TCCAGTCGATTCACTCGGTATTGACCCGCATCTTGATAGCTGGCCGCTGAACACCACAGACTTAACCACAGTGCTGGCTA
ACAACGCAGGTTTTGATGCCGAAACTATTAAAGGTTGGAACGATGATGTACAGGGATTCCACACCATGGAATACCTATTG
TTTGGTGACGGTGTAGCCGACAACACTAAGACCATTAGCGAGCTCACGGTAAATGAGCGTGACTATTTAATGGGGCTAGC
CGAAGTCTTTCGTGATTACACTAAGACACTCGATGACGCATGGCTAATTAGCCATGACGGACAAAACGGTAAAGCTTACG
GTGAGTTACTGAAAAACTCTGGAGCCGATGGCAATACTTTCTACAGCTCTGAAGTGGGTGTAGTAGAGGAGCTGGTTAAC
GGCATGATTGGCATCGTCGACGAAGTGGGTAACGGGAAGATTGCTGATCCATTTGGTGAGTCACTCGCTAAGGCCGACAC
TTCTAAAGTGGAGTCTCAGTACTCTTGGAACTCGCTCACCGACTTTAGCGACAATATCGTAGGCGTTCGCAACGTTTATT
TGGGCGAGCTAGAAGGCAATGCCGATAAGCAAGGGATCATCGATTTTGTCGATGCGGCAAACCCTGAGCTAGCGACTCGC
GTTAAGGATGAGATCGATGATGCCATCAGTAAGATTGAAGCGATTGCCGGCGATAATAATATGCCTTTCCGTCAAGCGAT
TTCAGATGCCGATGGCCGCGTTCGTATTCAAACTGCAGTCGATGCACTTACTAAGTTACAAGCGAGTTTAGAGTCAGATG
TCCTGCCACTGCTTAAAGAGTGGAATATCTAA

Upstream 100 bases:

>100_bases
CAAGTCGCGGTTGCATCCATTCCCGATACTAACTTTTTCGCATTAGGCGTTGGTTACCAGTTCTCAATTTAATTTAATGA
CTTAATACATGGAGTTTTCA

Downstream 100 bases:

>100_bases
AGCATGAGTGTATGAGGAGGCCTTAAGGCCTCCTTTTTATTTGGATAATTCCCTTGTTTTTTAGGTGGTTACTTCTAATG
CTTTGCAAATAAACCGCTTA

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MKHFTQSVVAIALISALAGCGGSGSDDSTPEVIPETGFTFSATDMVANLTDDVIVAGYSNLAVRGEAMLQATQTLVATPT
QANLEAAQAAWKAARQPWEQGESHIFGPVDSLGIDPHLDSWPLNTTDLTTVLANNAGFDAETIKGWNDDVQGFHTMEYLL
FGDGVADNTKTISELTVNERDYLMGLAEVFRDYTKTLDDAWLISHDGQNGKAYGELLKNSGADGNTFYSSEVGVVEELVN
GMIGIVDEVGNGKIADPFGESLAKADTSKVESQYSWNSLTDFSDNIVGVRNVYLGELEGNADKQGIIDFVDAANPELATR
VKDEIDDAISKIEAIAGDNNMPFRQAISDADGRVRIQTAVDALTKLQASLESDVLPLLKEWNI

Sequences:

>Translated_383_residues
MKHFTQSVVAIALISALAGCGGSGSDDSTPEVIPETGFTFSATDMVANLTDDVIVAGYSNLAVRGEAMLQATQTLVATPT
QANLEAAQAAWKAARQPWEQGESHIFGPVDSLGIDPHLDSWPLNTTDLTTVLANNAGFDAETIKGWNDDVQGFHTMEYLL
FGDGVADNTKTISELTVNERDYLMGLAEVFRDYTKTLDDAWLISHDGQNGKAYGELLKNSGADGNTFYSSEVGVVEELVN
GMIGIVDEVGNGKIADPFGESLAKADTSKVESQYSWNSLTDFSDNIVGVRNVYLGELEGNADKQGIIDFVDAANPELATR
VKDEIDDAISKIEAIAGDNNMPFRQAISDADGRVRIQTAVDALTKLQASLESDVLPLLKEWNI
>Mature_383_residues
MKHFTQSVVAIALISALAGCGGSGSDDSTPEVIPETGFTFSATDMVANLTDDVIVAGYSNLAVRGEAMLQATQTLVATPT
QANLEAAQAAWKAARQPWEQGESHIFGPVDSLGIDPHLDSWPLNTTDLTTVLANNAGFDAETIKGWNDDVQGFHTMEYLL
FGDGVADNTKTISELTVNERDYLMGLAEVFRDYTKTLDDAWLISHDGQNGKAYGELLKNSGADGNTFYSSEVGVVEELVN
GMIGIVDEVGNGKIADPFGESLAKADTSKVESQYSWNSLTDFSDNIVGVRNVYLGELEGNADKQGIIDFVDAANPELATR
VKDEIDDAISKIEAIAGDNNMPFRQAISDADGRVRIQTAVDALTKLQASLESDVLPLLKEWNI

Specific function: IrpA occurs under iron-deficient growth conditions in cyanobacterium Synechococcus and disappears in cells recovering from iron starvation. It seems to be involved in iron acquisition, uptake or storage [H]

COG id: COG3487

COG function: function code P; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cell inner membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 41122; Mature: 41122

Theoretical pI: Translated: 3.95; Mature: 3.95

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHFTQSVVAIALISALAGCGGSGSDDSTPEVIPETGFTFSATDMVANLTDDVIVAGYSN
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHCCCCEEEECCCC
LAVRGEAMLQATQTLVATPTQANLEAAQAAWKAARQPWEQGESHIFGPVDSLGIDPHLDS
CEECHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHCCCCCCCCCHHHCCCCCCCCC
WPLNTTDLTTVLANNAGFDAETIKGWNDDVQGFHTMEYLLFGDGVADNTKTISELTVNER
CCCCCHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHEECCCCCCCCHHHHHHHCCHH
DYLMGLAEVFRDYTKTLDDAWLISHDGQNGKAYGELLKNSGADGNTFYSSEVGVVEELVN
HHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHH
GMIGIVDEVGNGKIADPFGESLAKADTSKVESQYSWNSLTDFSDNIVGVRNVYLGELEGN
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHEEEEECCCC
ADKQGIIDFVDAANPELATRVKDEIDDAISKIEAIAGDNNMPFRQAISDADGRVRIQTAV
CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEEHHHH
DALTKLQASLESDVLPLLKEWNI
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKHFTQSVVAIALISALAGCGGSGSDDSTPEVIPETGFTFSATDMVANLTDDVIVAGYSN
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHCCCCEEEECCCC
LAVRGEAMLQATQTLVATPTQANLEAAQAAWKAARQPWEQGESHIFGPVDSLGIDPHLDS
CEECHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHCCCCCCCCCHHHCCCCCCCCC
WPLNTTDLTTVLANNAGFDAETIKGWNDDVQGFHTMEYLLFGDGVADNTKTISELTVNER
CCCCCHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHEECCCCCCCCHHHHHHHCCHH
DYLMGLAEVFRDYTKTLDDAWLISHDGQNGKAYGELLKNSGADGNTFYSSEVGVVEELVN
HHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHH
GMIGIVDEVGNGKIADPFGESLAKADTSKVESQYSWNSLTDFSDNIVGVRNVYLGELEGN
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHEEEEECCCC
ADKQGIIDFVDAANPELATRVKDEIDDAISKIEAIAGDNNMPFRQAISDADGRVRIQTAV
CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEEHHHH
DALTKLQASLESDVLPLLKEWNI
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3139627 [H]