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The map label for this gene is csgD [C]

Identifier: 157960462

GI number: 157960462

Start: 784084

End: 784758

Strand: Direct

Name: csgD [C]

Synonym: Spea_0633

Alternate gene names: 157960462

Gene position: 784084-784758 (Clockwise)

Preceding gene: 157960461

Following gene: 157960463

Centisome position: 15.15

GC content: 43.56

Gene sequence:

>675_bases
ATGAGTAAAATTGATGAGGTTATCTTTCTTCATCAGGTGGCATCTCCTTGCCACTTAGCTATTCTTGCGGAGTCAATTGG
ACTGAAAACGCAGGTTATCTCTAACGTAGAACAGCTTGACCCCAATAGTCACAGTAACTGCTTTTATCTTGTCTCTCAGC
AAGGTGCAGCACTGGATATTAATGGTATTCCGCTGGTGGCGAGTCAATTAGTTAAGCATGTTCCTGTGGCGCTTTATCAA
GTCGAACGTGAAGGTCTATCTGCAGAAGCCGCGCTGCTTCAGGGGATCCGTGGTCTACTGTTTAATAACGAGCGTATGGA
TCTGCTACTAACGGGATTACGTAAGATGCTTAGCGATGAGCTATGGTTCGACAGACCATTAATGAGCAAAGTATTGCGCC
AACTTGTCAATAAGATGGGCATTTCTGAATCTTTAACAAGTGAGGCCTCCGAATCACTCGAGGGACTAACCAATCGTGAG
AAAACCATCATTCAATTGGTGTCCAGTGGCGCACGTAACAAAGAGATAGCCGATAAGCTGTGTATTAGTGAGCATACGGT
AAAGGCGCATATTTCCTCTATATTCAGAAAAACCCAAGCCAGAAACCGTGTAGAACTATTGCGCTGGGCACAGTCATTTG
AAAGCCAACTTAATTTATATGAATTAAGTCACTAA

Upstream 100 bases:

>100_bases
TTAGACCACAAGCTCTGATGTTTTCTCAGATTCATCTCTGAATTAACCTCTGAGCTTGTTCTACTTAGTGTATAGGCAAA
ACTTTTCAGGGAGAAAAGTG

Downstream 100 bases:

>100_bases
CCAGCATATATAGCCATTTATTCACCACTTTAAAGCAATGTTGGCCATAGCTTTTTTGTATAGCTAATAGGCATAGCTTT
TACGATAGCTCTGAATATAG

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator LuxR Family; Transcriptional Regulator LuxR Family Protein; CsgAB Operon Transcriptional Regulatory Protein; Transcriptional Regulator; Regulatory Protein LuxR; Response Regulator Receiver Protein; LuxR Family CSG Operon Transcriptional Regulator; Response Regulator; Csg Operon Transcription Regulator Protein; Protein-Glutamate Methylesterase; Transcriptional Regulator VpsT

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MSKIDEVIFLHQVASPCHLAILAESIGLKTQVISNVEQLDPNSHSNCFYLVSQQGAALDINGIPLVASQLVKHVPVALYQ
VEREGLSAEAALLQGIRGLLFNNERMDLLLTGLRKMLSDELWFDRPLMSKVLRQLVNKMGISESLTSEASESLEGLTNRE
KTIIQLVSSGARNKEIADKLCISEHTVKAHISSIFRKTQARNRVELLRWAQSFESQLNLYELSH

Sequences:

>Translated_224_residues
MSKIDEVIFLHQVASPCHLAILAESIGLKTQVISNVEQLDPNSHSNCFYLVSQQGAALDINGIPLVASQLVKHVPVALYQ
VEREGLSAEAALLQGIRGLLFNNERMDLLLTGLRKMLSDELWFDRPLMSKVLRQLVNKMGISESLTSEASESLEGLTNRE
KTIIQLVSSGARNKEIADKLCISEHTVKAHISSIFRKTQARNRVELLRWAQSFESQLNLYELSH
>Mature_223_residues
SKIDEVIFLHQVASPCHLAILAESIGLKTQVISNVEQLDPNSHSNCFYLVSQQGAALDINGIPLVASQLVKHVPVALYQV
EREGLSAEAALLQGIRGLLFNNERMDLLLTGLRKMLSDELWFDRPLMSKVLRQLVNKMGISESLTSEASESLEGLTNREK
TIIQLVSSGARNKEIADKLCISEHTVKAHISSIFRKTQARNRVELLRWAQSFESQLNLYELSH

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787277, Length=115, Percent_Identity=33.9130434782609, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25046; Mature: 24915

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIDEVIFLHQVASPCHLAILAESIGLKTQVISNVEQLDPNSHSNCFYLVSQQGAALDI
CCHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEC
NGIPLVASQLVKHVPVALYQVEREGLSAEAALLQGIRGLLFNNERMDLLLTGLRKMLSDE
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LWFDRPLMSKVLRQLVNKMGISESLTSEASESLEGLTNREKTIIQLVSSGARNKEIADKL
HHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
CISEHTVKAHISSIFRKTQARNRVELLRWAQSFESQLNLYELSH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure 
SKIDEVIFLHQVASPCHLAILAESIGLKTQVISNVEQLDPNSHSNCFYLVSQQGAALDI
CHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEC
NGIPLVASQLVKHVPVALYQVEREGLSAEAALLQGIRGLLFNNERMDLLLTGLRKMLSDE
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LWFDRPLMSKVLRQLVNKMGISESLTSEASESLEGLTNREKTIIQLVSSGARNKEIADKL
HHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
CISEHTVKAHISSIFRKTQARNRVELLRWAQSFESQLNLYELSH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA