Click here to switch to the map view.

The map label for this gene is prtR [H]

Identifier: 157371448

GI number: 157371448

Start: 3536484

End: 3537230

Strand: Direct

Name: prtR [H]

Synonym: Spro_3211

Alternate gene names: 157371448

Gene position: 3536484-3537230 (Clockwise)

Preceding gene: 157371444

Following gene: 157371450

Centisome position: 64.9

GC content: 53.95

Gene sequence:

>747_bases
ATGGAAACCAAAGAAATAAGACGCAATAATTTGCGCGAGCTGATGGCCAGCTACGCCCGACAGGGTGTCAACCAGAACGA
GTTTGCGCTGCTGGTAGAGTCCTCTTCACCAACGCTGAGCCAAATCAGCGGTGAAAAGTCTTCCCGCAATCTGGGTGATA
ACCTCGCCAGGCGGATCGAGGCCAAACTGAACCTGCCCAAGGGCTGGTTTGACGTTTTCCATGAAAAACAGCTGGTGCGG
CCGTTTGATAACGTAGCGGCAGAGTCGGATTTTCAACCCGCCCGCCTCAAGCCGGTGGTCTGGGAAGACACCGAACAGGA
CAAGGAAGAGTTTGTGGAAATTCCCCTGCTGGATATTAATTTCTCGGCCGGCGATGGCTGTTATGAAATCGTCGATCGCG
AAGAATTTTCGCTGATCTTCCGTCGCTACTATCTGCACAAGATGGGGGTGGCGGTGAATGCCGCACGCATCATCCGCATT
TCCGGCTCCAGTATGGAACCGCGCCTGCAAGACGGTGATGTGGTAGGGATCAATACCGATGACACACGTATTCGAGAAGG
CAAAACCTACGCTATTCGTCATGGCAATCTGCTGCGGGTAAAAGTGTTGATCGAACAACCCGACGGCGGTGTCACTATTC
GCTCCCTGAACCGGGAAGAGTACCAGGACGAACACCTGAGTTACCCGCAGCGCAAAGACCAACTGGTGGTGCTGGGCCGC
GTTTTCTGGTCGTCTTCGTCCTGGTAA

Upstream 100 bases:

>100_bases
TGTCCACCCGTTCATGTTTAGCTAATTGCTAAAGTTAAAGCAAGAAATATTTAGTGAAAGCAATATTTACCTTTTTGCTA
AAGAGTGCGATCATCCGGCG

Downstream 100 bases:

>100_bases
TGAGGCGGATACAGTCAGGCGCCGCCAATCGGCGCCGTGCTGTTATTTGAAATCTACCACCATTTGCTGCTGGATAGACA
AACCGCGGGTCGACTGTACG

Product: putative phage repressor

Products: NA

Alternate protein names: Pyocin repressor protein [H]

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
METKEIRRNNLRELMASYARQGVNQNEFALLVESSSPTLSQISGEKSSRNLGDNLARRIEAKLNLPKGWFDVFHEKQLVR
PFDNVAAESDFQPARLKPVVWEDTEQDKEEFVEIPLLDINFSAGDGCYEIVDREEFSLIFRRYYLHKMGVAVNAARIIRI
SGSSMEPRLQDGDVVGINTDDTRIREGKTYAIRHGNLLRVKVLIEQPDGGVTIRSLNREEYQDEHLSYPQRKDQLVVLGR
VFWSSSSW

Sequences:

>Translated_248_residues
METKEIRRNNLRELMASYARQGVNQNEFALLVESSSPTLSQISGEKSSRNLGDNLARRIEAKLNLPKGWFDVFHEKQLVR
PFDNVAAESDFQPARLKPVVWEDTEQDKEEFVEIPLLDINFSAGDGCYEIVDREEFSLIFRRYYLHKMGVAVNAARIIRI
SGSSMEPRLQDGDVVGINTDDTRIREGKTYAIRHGNLLRVKVLIEQPDGGVTIRSLNREEYQDEHLSYPQRKDQLVVLGR
VFWSSSSW
>Mature_248_residues
METKEIRRNNLRELMASYARQGVNQNEFALLVESSSPTLSQISGEKSSRNLGDNLARRIEAKLNLPKGWFDVFHEKQLVR
PFDNVAAESDFQPARLKPVVWEDTEQDKEEFVEIPLLDINFSAGDGCYEIVDREEFSLIFRRYYLHKMGVAVNAARIIRI
SGSSMEPRLQDGDVVGINTDDTRIREGKTYAIRHGNLLRVKVLIEQPDGGVTIRSLNREEYQDEHLSYPQRKDQLVVLGR
VFWSSSSW

Specific function: Represses the promoter activity of the prtN gene [H]

COG id: COG2932

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 28547; Mature: 28547

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METKEIRRNNLRELMASYARQGVNQNEFALLVESSSPTLSQISGEKSSRNLGDNLARRIE
CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHCCCCCCCCHHHHHHHHHH
AKLNLPKGWFDVFHEKQLVRPFDNVAAESDFQPARLKPVVWEDTEQDKEEFVEIPLLDIN
HHCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHCCCEEEEE
FSAGDGCYEIVDREEFSLIFRRYYLHKMGVAVNAARIIRISGSSMEPRLQDGDVVGINTD
CCCCCCHHHHHCCHHHHHHHHHHHHHHHCCEECEEEEEEEECCCCCCCCCCCCEEEECCC
DTRIREGKTYAIRHGNLLRVKVLIEQPDGGVTIRSLNREEYQDEHLSYPQRKDQLVVLGR
CCEEECCCEEEEECCCEEEEEEEEECCCCCEEEEECCHHHHHHHHCCCCCCCCCEEEEEE
VFWSSSSW
EECCCCCC
>Mature Secondary Structure
METKEIRRNNLRELMASYARQGVNQNEFALLVESSSPTLSQISGEKSSRNLGDNLARRIE
CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHCCCCCCCCHHHHHHHHHH
AKLNLPKGWFDVFHEKQLVRPFDNVAAESDFQPARLKPVVWEDTEQDKEEFVEIPLLDIN
HHCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHCCCEEEEE
FSAGDGCYEIVDREEFSLIFRRYYLHKMGVAVNAARIIRISGSSMEPRLQDGDVVGINTD
CCCCCCHHHHHCCHHHHHHHHHHHHHHHCCEECEEEEEEEECCCCCCCCCCCCEEEECCC
DTRIREGKTYAIRHGNLLRVKVLIEQPDGGVTIRSLNREEYQDEHLSYPQRKDQLVVLGR
CCEEECCCEEEEECCCEEEEEEEEECCCCCEEEEECCHHHHHHHHCCCCCCCCCEEEEEE
VFWSSSSW
EECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8444788; 10984043 [H]