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The map label for this gene is ygaU [H]

Identifier: 157371076

GI number: 157371076

Start: 3112961

End: 3113407

Strand: Reverse

Name: ygaU [H]

Synonym: Spro_2836

Alternate gene names: 157371076

Gene position: 3113407-3112961 (Counterclockwise)

Preceding gene: 157371079

Following gene: 157371075

Centisome position: 57.14

GC content: 53.02

Gene sequence:

>447_bases
ATGGGTTTGTTTAACTTCGTCAAAGAAGCGGGCGAAAAACTGTGGGACACAGTGACCGGCAATGCCACTGCTGAAGACCA
AAGCGCCAAGCTGAAGGATCACCTCAATAAAACCGGTTTGCCGGGTATCGACAAGGTTGATGTGCAGGTGGTTGACGGTA
AAGCGGTGGTGACCGGGGACGCAGTCAGCCAGGAGCTGAAAGAGAAGATCCTGGTGGCCGTAGGGAATGTCGCCGGCATC
AGCGGTGTGGAAGACAAGGTGTCGGTTGAACAGGCAGCTGCAGAAAGCCGCTTCTATACCGTGAAAAAGGGCGACACCCT
GAGCGCAGTTTCGAAAGAAGTGTATGGCAACGCCAATCTGTACAACAAGATTTTCGAAGCGAACAAGCCAATGTTGTCCA
GCCCGGACAAAATCTATCCGGGGCAGGTACTGCGTATCCCTGAGTAA

Upstream 100 bases:

>100_bases
ACCGCTTAATACCTCAGGGCCAATGGAATATCCCTCTTGCAGTGCTAAGCTTAACTAGCCTTAAGTCAATGCAACATTGT
AACCATCGAAAGGAGTGAAT

Downstream 100 bases:

>100_bases
CAACGACAGCCTATGCCTGGCCCGATCTTTGGTCGGGCTTTTTTATTTTATTTAGTATAAGTTAGGCTAATTATCTTCTA
GTAGTAATAAGATTTTCGAA

Product: LysM domain/BON superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MGLFNFVKEAGEKLWDTVTGNATAEDQSAKLKDHLNKTGLPGIDKVDVQVVDGKAVVTGDAVSQELKEKILVAVGNVAGI
SGVEDKVSVEQAAAESRFYTVKKGDTLSAVSKEVYGNANLYNKIFEANKPMLSSPDKIYPGQVLRIPE

Sequences:

>Translated_148_residues
MGLFNFVKEAGEKLWDTVTGNATAEDQSAKLKDHLNKTGLPGIDKVDVQVVDGKAVVTGDAVSQELKEKILVAVGNVAGI
SGVEDKVSVEQAAAESRFYTVKKGDTLSAVSKEVYGNANLYNKIFEANKPMLSSPDKIYPGQVLRIPE
>Mature_147_residues
GLFNFVKEAGEKLWDTVTGNATAEDQSAKLKDHLNKTGLPGIDKVDVQVVDGKAVVTGDAVSQELKEKILVAVGNVAGIS
GVEDKVSVEQAAAESRFYTVKKGDTLSAVSKEVYGNANLYNKIFEANKPMLSSPDKIYPGQVLRIPE

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789019, Length=148, Percent_Identity=72.2972972972973, Blast_Score=230, Evalue=3e-62,

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR007055
- InterPro:   IPR014004 [H]

Pfam domain/function: PF04972 BON; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 15854; Mature: 15723

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLFNFVKEAGEKLWDTVTGNATAEDQSAKLKDHLNKTGLPGIDKVDVQVVDGKAVVTGD
CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEECH
AVSQELKEKILVAVGNVAGISGVEDKVSVEQAAAESRFYTVKKGDTLSAVSKEVYGNANL
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCHHHHHHHHCCCCHH
YNKIFEANKPMLSSPDKIYPGQVLRIPE
HHHHHHCCCCCCCCCCCCCCCEEEECCC
>Mature Secondary Structure 
GLFNFVKEAGEKLWDTVTGNATAEDQSAKLKDHLNKTGLPGIDKVDVQVVDGKAVVTGD
CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEECH
AVSQELKEKILVAVGNVAGISGVEDKVSVEQAAAESRFYTVKKGDTLSAVSKEVYGNANL
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCHHHHHHHHCCCCHH
YNKIFEANKPMLSSPDKIYPGQVLRIPE
HHHHHHCCCCCCCCCCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]