Click here to switch to the map view.

The map label for this gene is ompF [H]

Identifier: 157371079

GI number: 157371079

Start: 3114267

End: 3115349

Strand: Reverse

Name: ompF [H]

Synonym: Spro_2839

Alternate gene names: 157371079

Gene position: 3115349-3114267 (Counterclockwise)

Preceding gene: 157371080

Following gene: 157371076

Centisome position: 57.17

GC content: 52.08

Gene sequence:

>1083_bases
ATGATGAAACGCAGTGTATTAGCCTTAGCTATTGCCCTCGGGGCAATCACCTCCTTTGCCAACGCGGCTGAAATTTATAA
TAAAGATGGCAATAAACTCGACCTCTATGGTCGTGTAGCGGCCAAACATGTTTTCAGCGATGATAAATCCGAAGACGGCG
ACAAGACTTATGTCCGTTTGGGTTTTAAAGGCGAAACGCAAATCAATGATCAACTGACCGGGTACGGCCAGTGGGAATAC
AACGTCCAGGCCAACCACGACGAAGGGCAGGGTACCGCGGGCACCAAAACCCGTCTGGGCTTTGCCGGTCTGAAATTTGC
TGACTACGGTTCATTCGATTACGGTCGTAACTACGGCGTAGTGTACGACGCAGAAGCTTACACCGACATGCTGCCGGAAT
TCGGCGGTGACTCCTACAGCTACACCGATAACTACATGACCGCACGTTCCAACGGTCTGGCAACCTACCGTAACCGCGAT
TTCTTCGGTCTGGTGGAAGGCCTGAACCTGGCGTTGCAGTACCAGGGTAAAAACGACGGTGACGGTCGTGCCGTGAGCAA
GCAAAACGGCGACGGTTACGGCATGTCCCTGGATTATCAGGACATCGGCGGTTCCGGCATCGGCGTAGCGGCGGCATTCT
CTGACTCCAACCGCACCAGCAAGCAGAAAGAATCCGAGTACGGTAAAGGCGACAGCGCAACAGCCTGGACCACGGCAATT
AAGTATGACGCCAACCAGGTTTACCTGGCCGCCATGTACGCCGATACGCGTAACATGACGCCAATCAGCGGCAACGGCAT
TTCCGGCTTCGCCAACAAAACGCAGAACTTCGAAGTTGTGGCTCAGTACCAGTTTGAAAACGGTCTGCGTCCATCTCTGG
CCTACGTGCAGTCCAAAGGCAAGGATATCGAAGGGATTGGCGACGTCGATCTGGTGAAATACGTGGAAGTGGGTGCGACT
TACTACTTCAACAAAAACATGTACACCTATGTTGACTATAAAATCAACCAGTTGAACGACGATAACAAGCTGAAACTGAG
CACCGACGATATCGTGGCAGTGAACCTGACCTATCGTTTCTAA

Upstream 100 bases:

>100_bases
TAGGGGCGCTCATAAAACACTAAATGATAAAGATCACAGCCCAAACCATAAATTGGGCGTGATGGGCAGGAATTAAAAAT
TATAATATCTAGGAAAATAA

Downstream 100 bases:

>100_bases
GTTTCAACGCTATTACCTTCTCCTGTGTCGGGATCAAAGGGTAATGAGGCAGAGCGCTAGCTCTGCCTTTTCTTTTATGG
GAGCCACTATCCTCTGGGGG

Product: porin

Products: NA

Alternate protein names: Porin ompF [H]

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MMKRSVLALAIALGAITSFANAAEIYNKDGNKLDLYGRVAAKHVFSDDKSEDGDKTYVRLGFKGETQINDQLTGYGQWEY
NVQANHDEGQGTAGTKTRLGFAGLKFADYGSFDYGRNYGVVYDAEAYTDMLPEFGGDSYSYTDNYMTARSNGLATYRNRD
FFGLVEGLNLALQYQGKNDGDGRAVSKQNGDGYGMSLDYQDIGGSGIGVAAAFSDSNRTSKQKESEYGKGDSATAWTTAI
KYDANQVYLAAMYADTRNMTPISGNGISGFANKTQNFEVVAQYQFENGLRPSLAYVQSKGKDIEGIGDVDLVKYVEVGAT
YYFNKNMYTYVDYKINQLNDDNKLKLSTDDIVAVNLTYRF

Sequences:

>Translated_360_residues
MMKRSVLALAIALGAITSFANAAEIYNKDGNKLDLYGRVAAKHVFSDDKSEDGDKTYVRLGFKGETQINDQLTGYGQWEY
NVQANHDEGQGTAGTKTRLGFAGLKFADYGSFDYGRNYGVVYDAEAYTDMLPEFGGDSYSYTDNYMTARSNGLATYRNRD
FFGLVEGLNLALQYQGKNDGDGRAVSKQNGDGYGMSLDYQDIGGSGIGVAAAFSDSNRTSKQKESEYGKGDSATAWTTAI
KYDANQVYLAAMYADTRNMTPISGNGISGFANKTQNFEVVAQYQFENGLRPSLAYVQSKGKDIEGIGDVDLVKYVEVGAT
YYFNKNMYTYVDYKINQLNDDNKLKLSTDDIVAVNLTYRF
>Mature_360_residues
MMKRSVLALAIALGAITSFANAAEIYNKDGNKLDLYGRVAAKHVFSDDKSEDGDKTYVRLGFKGETQINDQLTGYGQWEY
NVQANHDEGQGTAGTKTRLGFAGLKFADYGSFDYGRNYGVVYDAEAYTDMLPEFGGDSYSYTDNYMTARSNGLATYRNRD
FFGLVEGLNLALQYQGKNDGDGRAVSKQNGDGYGMSLDYQDIGGSGIGVAAAFSDSNRTSKQKESEYGKGDSATAWTTAI
KYDANQVYLAAMYADTRNMTPISGNGISGFANKTQNFEVVAQYQFENGLRPSLAYVQSKGKDIEGIGDVDLVKYVEVGAT
YYFNKNMYTYVDYKINQLNDDNKLKLSTDDIVAVNLTYRF

Specific function: OmpF is a porin that forms passive diffusion pores which allow small molecular weight hydrophilic materials across the outer membrane. It is also a receptor for the bacteriophage T2 [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1786436, Length=359, Percent_Identity=63.7883008356546, Blast_Score=455, Evalue=1e-129,
Organism=Escherichia coli, GI1787160, Length=368, Percent_Identity=59.2391304347826, Blast_Score=417, Evalue=1e-118,
Organism=Escherichia coli, GI1787641, Length=359, Percent_Identity=60.1671309192201, Blast_Score=417, Evalue=1e-118,
Organism=Escherichia coli, GI1788544, Length=377, Percent_Identity=57.8249336870027, Blast_Score=394, Evalue=1e-111,

Paralogues:

None

Copy number: 794 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 39672; Mature: 39672

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKRSVLALAIALGAITSFANAAEIYNKDGNKLDLYGRVAAKHVFSDDKSEDGDKTYVRL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCCCCCCCCEEEEEE
GFKGETQINDQLTGYGQWEYNVQANHDEGQGTAGTKTRLGFAGLKFADYGSFDYGRNYGV
ECCCCCEECCCCCCCEEEEEEEEECCCCCCCCCCCCEECCCCCCEEECCCCCCCCCCCCE
VYDAEAYTDMLPEFGGDSYSYTDNYMTARSNGLATYRNRDFFGLVEGLNLALQYQGKNDG
EEECHHHHHHHHHHCCCCCEECCCEEEECCCCEEEECCCCCEEEEECCEEEEEECCCCCC
DGRAVSKQNGDGYGMSLDYQDIGGSGIGVAAAFSDSNRTSKQKESEYGKGDSATAWTTAI
CCCEEECCCCCCCCEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCEEEEEEE
KYDANQVYLAAMYADTRNMTPISGNGISGFANKTQNFEVVAQYQFENGLRPSLAYVQSKG
EECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHCC
KDIEGIGDVDLVKYVEVGATYYFNKNMYTYVDYKINQLNDDNKLKLSTDDIVAVNLTYRF
CCCCCCCCHHHHHHEEECEEEEECCCEEEEEEEEEEECCCCCEEEEECCCEEEEEEEEEC
>Mature Secondary Structure
MMKRSVLALAIALGAITSFANAAEIYNKDGNKLDLYGRVAAKHVFSDDKSEDGDKTYVRL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCCCCCCCCEEEEEE
GFKGETQINDQLTGYGQWEYNVQANHDEGQGTAGTKTRLGFAGLKFADYGSFDYGRNYGV
ECCCCCEECCCCCCCEEEEEEEEECCCCCCCCCCCCEECCCCCCEEECCCCCCCCCCCCE
VYDAEAYTDMLPEFGGDSYSYTDNYMTARSNGLATYRNRDFFGLVEGLNLALQYQGKNDG
EEECHHHHHHHHHHCCCCCEECCCEEEECCCCEEEECCCCCEEEEECCEEEEEECCCCCC
DGRAVSKQNGDGYGMSLDYQDIGGSGIGVAAAFSDSNRTSKQKESEYGKGDSATAWTTAI
CCCEEECCCCCCCCEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCEEEEEEE
KYDANQVYLAAMYADTRNMTPISGNGISGFANKTQNFEVVAQYQFENGLRPSLAYVQSKG
EECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHCC
KDIEGIGDVDLVKYVEVGATYYFNKNMYTYVDYKINQLNDDNKLKLSTDDIVAVNLTYRF
CCCCCCCCHHHHHHEEECEEEEECCCEEEEEEEEEEECCCCCEEEEECCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9274033 [H]