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The map label for this gene is yulB [H]

Identifier: 157370931

GI number: 157370931

Start: 2962203

End: 2962967

Strand: Reverse

Name: yulB [H]

Synonym: Spro_2691

Alternate gene names: 157370931

Gene position: 2962967-2962203 (Counterclockwise)

Preceding gene: 157370935

Following gene: 157370926

Centisome position: 54.38

GC content: 47.71

Gene sequence:

>765_bases
ATGGATTATTCAAACGCACTAGAACGCAGAAACATCATTCTCGAAAAGTTGAAAACTAACGGGCAAGTCTTCGTCAATGA
ACTGGCTGATGATTTTAATGTTTCGCAGGAGACCATCCGCAGAGATCTCAATAAGCTTGAAGAACTCAAACACATCAAGA
AAATCCATGGCGGGGCAGTCATCGCTCAGTTTGGGTTTGAGCTGGAGTTTAATCAGCGAGCCAGATTGGCTGAGGATGAC
AAAAAGGCCATAGCCGTTAAAGCTGCCGAATTGATCAAGCCCGGTGACTCACTGTTTATCGATTTTGGTACCACAACCTT
AGAATTTGCCAAACAGATTGCCGGCATTAACCAGCTTACCGTTATCACCAATTCGCCGGTTATTGCTAACCTGTTTCATG
AAAATACGACGATTGACCTGATTTTGATCGGCGGGCAATTTGGTCTGTCAAAAATGGAATGCATTGGGCCGGTGGCATTG
CAGGGCATCAGCGCTTTCTATGCGGATTATGCGGTTATCGGCGCGGGTGCGGTGAGCCCTAAGGCCGGGGTGATGGATCA
GGATTTGAACGAAGCGGCGATCGCCCGTCAGATGATCAAAAACAGCAACAAAACCATTGTTCTCGCCGATGGACATAAGC
TGAATAACCATGCGACGGGCCTGGTCGCAGATTTAAAAGATATTTCGTGGTTGGTGACCAGCGATCCGGAGAAGAAATTG
AAGAACCTGGTTTTCCCGGCCAATCTCCAGGTGATCGTCGCCTGA

Upstream 100 bases:

>100_bases
GCTTCATGGTTGGAGTTGGTGAACAATTGCCAACTAAGCAATGAAAAACCCTTAAATCCACAATTTTTATCATGTTAAAT
GCAGCGAGATGGGTTAGAAG

Downstream 100 bases:

>100_bases
CGGCAAAGGTAAATAACCATGCCGGTCAACGTGACCGGCATGGTTTATATTGATGTATGCGCTGTTACTCTTTCCACAGA
ATGTGGCAAAGCTTGTGGTC

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MDYSNALERRNIILEKLKTNGQVFVNELADDFNVSQETIRRDLNKLEELKHIKKIHGGAVIAQFGFELEFNQRARLAEDD
KKAIAVKAAELIKPGDSLFIDFGTTTLEFAKQIAGINQLTVITNSPVIANLFHENTTIDLILIGGQFGLSKMECIGPVAL
QGISAFYADYAVIGAGAVSPKAGVMDQDLNEAAIARQMIKNSNKTIVLADGHKLNNHATGLVADLKDISWLVTSDPEKKL
KNLVFPANLQVIVA

Sequences:

>Translated_254_residues
MDYSNALERRNIILEKLKTNGQVFVNELADDFNVSQETIRRDLNKLEELKHIKKIHGGAVIAQFGFELEFNQRARLAEDD
KKAIAVKAAELIKPGDSLFIDFGTTTLEFAKQIAGINQLTVITNSPVIANLFHENTTIDLILIGGQFGLSKMECIGPVAL
QGISAFYADYAVIGAGAVSPKAGVMDQDLNEAAIARQMIKNSNKTIVLADGHKLNNHATGLVADLKDISWLVTSDPEKKL
KNLVFPANLQVIVA
>Mature_254_residues
MDYSNALERRNIILEKLKTNGQVFVNELADDFNVSQETIRRDLNKLEELKHIKKIHGGAVIAQFGFELEFNQRARLAEDD
KKAIAVKAAELIKPGDSLFIDFGTTTLEFAKQIAGINQLTVITNSPVIANLFHENTTIDLILIGGQFGLSKMECIGPVAL
QGISAFYADYAVIGAGAVSPKAGVMDQDLNEAAIARQMIKNSNKTIVLADGHKLNNHATGLVADLKDISWLVTSDPEKKL
KNLVFPANLQVIVA

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082344, Length=246, Percent_Identity=30.4878048780488, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI226510968, Length=251, Percent_Identity=32.6693227091633, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1789829, Length=229, Percent_Identity=31.0043668122271, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1789519, Length=251, Percent_Identity=29.0836653386454, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787540, Length=208, Percent_Identity=30.2884615384615, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1788069, Length=230, Percent_Identity=27.3913043478261, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790635, Length=235, Percent_Identity=28.0851063829787, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1789059, Length=234, Percent_Identity=29.0598290598291, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790753, Length=230, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787063, Length=243, Percent_Identity=27.1604938271605, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1789170, Length=233, Percent_Identity=23.6051502145923, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27755; Mature: 27755

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYSNALERRNIILEKLKTNGQVFVNELADDFNVSQETIRRDLNKLEELKHIKKIHGGAV
CCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEE
IAQFGFELEFNQRARLAEDDKKAIAVKAAELIKPGDSLFIDFGTTTLEFAKQIAGINQLT
EEEECCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEE
VITNSPVIANLFHENTTIDLILIGGQFGLSKMECIGPVALQGISAFYADYAVIGAGAVSP
EEECCCEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCC
KAGVMDQDLNEAAIARQMIKNSNKTIVLADGHKLNNHATGLVADLKDISWLVTSDPEKKL
CCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHCEEEEECCHHHHH
KNLVFPANLQVIVA
HHCCCCCCEEEEEC
>Mature Secondary Structure
MDYSNALERRNIILEKLKTNGQVFVNELADDFNVSQETIRRDLNKLEELKHIKKIHGGAV
CCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEE
IAQFGFELEFNQRARLAEDDKKAIAVKAAELIKPGDSLFIDFGTTTLEFAKQIAGINQLT
EEEECCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEE
VITNSPVIANLFHENTTIDLILIGGQFGLSKMECIGPVALQGISAFYADYAVIGAGAVSP
EEECCCEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCC
KAGVMDQDLNEAAIARQMIKNSNKTIVLADGHKLNNHATGLVADLKDISWLVTSDPEKKL
CCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHCEEEEECCHHHHH
KNLVFPANLQVIVA
HHCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]