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The map label for this gene is ompF [H]

Identifier: 157369973

GI number: 157369973

Start: 1903242

End: 1904351

Strand: Reverse

Name: ompF [H]

Synonym: Spro_1730

Alternate gene names: 157369973

Gene position: 1904351-1903242 (Counterclockwise)

Preceding gene: 157369974

Following gene: 157369972

Centisome position: 34.95

GC content: 50.36

Gene sequence:

>1110_bases
ATGATGAAGCGCAACATTCTTGCAGTGGTAATCCCGGCTCTGTTAGCAGCTGGTGCAGCAAACGCTGCTGAAATCTACAA
CAAAGACGGCAACAAACTGGATCTGTACGGTAAAGTTGACGGTCTGCACTACTTCTCAGACGACAAAGGTAATGATGGCG
ATCAGACCTATGTTCGTTTCGGCTTCAAAGGTGAAACCCAAATTACTGACCAACTGACCGGTTACGGCCAGTGGGAATAC
AACGTTCAGGCTAACCACGCTGAAAACCAGGGCACCGAAGGCACCAAGACTCGTCTGGGCTTCGCGGGTCTGAAATTTGC
TGACTACGGTTCATTCGACTACGGCCGTAACTACGGCGTACTGTACGACGTGGAAGGCTGGACAGATATGCTGCCAGAGT
TCGGTGGCGATACTTACACCTACACCGACAACTTCATGACTGGCCGTACCAACGGCGTTGCTACTTACCGTAACAACAAC
TTCTTCGGTCTGGTTGATGGTCTGAACTTCGCCGTTCAGTACCAGGGTAAGAACGAGAACGATGACCGCGATCTGAAGAA
ACAAAATGGCGACGGTTGGGGCCTGTCTTCTACTTATGACATCGGCGAAGGCATCAGCTTCGGTGCTGCATACGCATCAT
CTGACCGTACCGACGACCAGACTCAGCTGTCTACCGCTAAAGGCGACAAGGCTGATGCGTGGACCGTGGGTGCTAAATAC
GACGCGAACAACGTCTACCTGGCAACCATGTACTCAGAAACCCGTAACATGACTCCATACGGCGAATCTGACTTCACCAT
CGCTGACAAAACTCAGAACTTCGAAGTGACTGCACAGTACCAGTTCGACTTCGGTCTGCGTCCAGAAGTTTCTTACCTGC
AGTCTAAAGGTAAAAACCTGTCTAGCCGTACCGCAAACGGCTCTAGCTTCGGCGGCGGCGATGCCGACCTGGTTAAATAT
GTTTCTGTTGGTACCACTTACTACTTCAACAAAAACATGTCTACCTACGTTGATTACAAAATCAACCTGCTGGACGAGAA
CGAATTCACCAAAGCTAACGCCATCGCTACCGACGATATCGTAGGTGTTGGCCTGGTTTACCAGTTCTAA

Upstream 100 bases:

>100_bases
GTGCAGACACAGGACGACACCAATCTATCAACAATAGTTCCAAAAGAATTATTGGCGGCAGTGGCAAAGGTGTCCGAATA
ACACCAATGAGGGTAATATA

Downstream 100 bases:

>100_bases
GTTGTCTCACTTAACGGCGGTTCACCGTCGACTAAGTTAAAAAACAGGGCTTCGGCCCTGTTTTTGTTTTTGCGTCCCCC
TAAATTTTTATCCTGCCAAA

Product: porin

Products: NA

Alternate protein names: Porin ompF [H]

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MMKRNILAVVIPALLAAGAANAAEIYNKDGNKLDLYGKVDGLHYFSDDKGNDGDQTYVRFGFKGETQITDQLTGYGQWEY
NVQANHAENQGTEGTKTRLGFAGLKFADYGSFDYGRNYGVLYDVEGWTDMLPEFGGDTYTYTDNFMTGRTNGVATYRNNN
FFGLVDGLNFAVQYQGKNENDDRDLKKQNGDGWGLSSTYDIGEGISFGAAYASSDRTDDQTQLSTAKGDKADAWTVGAKY
DANNVYLATMYSETRNMTPYGESDFTIADKTQNFEVTAQYQFDFGLRPEVSYLQSKGKNLSSRTANGSSFGGGDADLVKY
VSVGTTYYFNKNMSTYVDYKINLLDENEFTKANAIATDDIVGVGLVYQF

Sequences:

>Translated_369_residues
MMKRNILAVVIPALLAAGAANAAEIYNKDGNKLDLYGKVDGLHYFSDDKGNDGDQTYVRFGFKGETQITDQLTGYGQWEY
NVQANHAENQGTEGTKTRLGFAGLKFADYGSFDYGRNYGVLYDVEGWTDMLPEFGGDTYTYTDNFMTGRTNGVATYRNNN
FFGLVDGLNFAVQYQGKNENDDRDLKKQNGDGWGLSSTYDIGEGISFGAAYASSDRTDDQTQLSTAKGDKADAWTVGAKY
DANNVYLATMYSETRNMTPYGESDFTIADKTQNFEVTAQYQFDFGLRPEVSYLQSKGKNLSSRTANGSSFGGGDADLVKY
VSVGTTYYFNKNMSTYVDYKINLLDENEFTKANAIATDDIVGVGLVYQF
>Mature_369_residues
MMKRNILAVVIPALLAAGAANAAEIYNKDGNKLDLYGKVDGLHYFSDDKGNDGDQTYVRFGFKGETQITDQLTGYGQWEY
NVQANHAENQGTEGTKTRLGFAGLKFADYGSFDYGRNYGVLYDVEGWTDMLPEFGGDTYTYTDNFMTGRTNGVATYRNNN
FFGLVDGLNFAVQYQGKNENDDRDLKKQNGDGWGLSSTYDIGEGISFGAAYASSDRTDDQTQLSTAKGDKADAWTVGAKY
DANNVYLATMYSETRNMTPYGESDFTIADKTQNFEVTAQYQFDFGLRPEVSYLQSKGKNLSSRTANGSSFGGGDADLVKY
VSVGTTYYFNKNMSTYVDYKINLLDENEFTKANAIATDDIVGVGLVYQF

Specific function: OmpF is a porin that forms passive diffusion pores which allow small molecular weight hydrophilic materials across the outer membrane. It is also a receptor for the bacteriophage T2 [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1787641, Length=356, Percent_Identity=72.1910112359551, Blast_Score=519, Evalue=1e-148,
Organism=Escherichia coli, GI1788544, Length=381, Percent_Identity=64.3044619422572, Blast_Score=453, Evalue=1e-129,
Organism=Escherichia coli, GI1786436, Length=369, Percent_Identity=60.7046070460705, Blast_Score=431, Evalue=1e-122,
Organism=Escherichia coli, GI1787160, Length=379, Percent_Identity=59.8944591029024, Blast_Score=414, Evalue=1e-117,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 40807; Mature: 40807

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: PS00576 GRAM_NEG_PORIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKRNILAVVIPALLAAGAANAAEIYNKDGNKLDLYGKVDGLHYFSDDKGNDGDQTYVRF
CCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCEEEEE
GFKGETQITDQLTGYGQWEYNVQANHAENQGTEGTKTRLGFAGLKFADYGSFDYGRNYGV
ECCCCCEEHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCEEECCCCCCCCCCCCE
LYDVEGWTDMLPEFGGDTYTYTDNFMTGRTNGVATYRNNNFFGLVDGLNFAVQYQGKNEN
EEECCCHHHHHHHHCCCEEEEECCEECCCCCCEEEEECCCEEEEEECCEEEEEECCCCCC
DDRDLKKQNGDGWGLSSTYDIGEGISFGAAYASSDRTDDQTQLSTAKGDKADAWTVGAKY
CCHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHCCCCCCCEEEECCEE
DANNVYLATMYSETRNMTPYGESDFTIADKTQNFEVTAQYQFDFGLRPEVSYLQSKGKNL
CCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEEEEEECCCCCCCHHHHHHCCCCC
SSRTANGSSFGGGDADLVKYVSVGTTYYFNKNMSTYVDYKINLLDENEFTKANAIATDDI
CCCCCCCCCCCCCCHHHEEEEEECEEEEECCCCCEEEEEEEEEECCCCCCCCCCEECCCE
VGVGLVYQF
EEEEEEEEC
>Mature Secondary Structure
MMKRNILAVVIPALLAAGAANAAEIYNKDGNKLDLYGKVDGLHYFSDDKGNDGDQTYVRF
CCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCEEEEE
GFKGETQITDQLTGYGQWEYNVQANHAENQGTEGTKTRLGFAGLKFADYGSFDYGRNYGV
ECCCCCEEHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCEEECCCCCCCCCCCCE
LYDVEGWTDMLPEFGGDTYTYTDNFMTGRTNGVATYRNNNFFGLVDGLNFAVQYQGKNEN
EEECCCHHHHHHHHCCCEEEEECCEECCCCCCEEEEECCCEEEEEECCEEEEEECCCCCC
DDRDLKKQNGDGWGLSSTYDIGEGISFGAAYASSDRTDDQTQLSTAKGDKADAWTVGAKY
CCHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHCCCCCCCEEEECCEE
DANNVYLATMYSETRNMTPYGESDFTIADKTQNFEVTAQYQFDFGLRPEVSYLQSKGKNL
CCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEEEEEECCCCCCCHHHHHHCCCCC
SSRTANGSSFGGGDADLVKYVSVGTTYYFNKNMSTYVDYKINLLDENEFTKANAIATDDI
CCCCCCCCCCCCCCHHHEEEEEECEEEEECCCCCEEEEEEEEEECCCCCCCCCCEECCCE
VGVGLVYQF
EEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9274033 [H]